Prupe.6G299500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015399
Physical Location & Seq
Reverse (-)
27246114 .. 27247515
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G299500.1

Sequence Viewer

Length: 651 bp
ATGGAAGTGGCGTCCTCATCAAAGGAAGAGGAAAGATCATTCAAAGCGGCGGGCGGCGGCGGCGGCGGAGATCCTCGCCGCCAATCTCGGAAGTGCAGAACCATCTGCCTAGCGGTGACAGCTGTTGTTCTGGTCGCAACAGTCGTACTCGTGATCCTCTGCTTCACGGTGTTCAAAGCCAGGGAGCCCGAAATGACAATCAATTCCGTCGTTTTGAAAGACCTCGACGTGGCGCTCAACATTCCCCGACTCAGCGTGGACGTGAACTTGACGCTGGACGTGGATCTATCCGTGAAGAACCCGAACAAAGCGGGCTTCAAGTACAAAAGCGGCAGCGCTTTGTTGAACTACAGAGGGGAGCTGGTGGGCCAGGGCCGAATCGGGTCGGGTGAGATATCGGCGGACCATACCAAGCCCATGAACGTGACGCTGACCATTATGGCGGACCGATTCCTGGAAAAATCGGAGCTCTTTTCGGACGTGGTGGCCGGTACGTTGCCTTTCACCACTTTGACCAAAGTATCGGGCAAAGTTGTCATTTTTGGAATTTTCAAGTTTCATGTGATCTCTACCTCCTCCTGCGATGTCAGTATCAATGTGAGTAATAAGACAGTTGGGGAGCAGAAGTGCACACGCAAGACAAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

217

Amino Acids

23.26

Weight (kDa)

9.34

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 65, 148, 291
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 147, 323, 493
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 229, 454
AgsI TTSAA 6 cut(s) 43, 175, 217, 319, 346, 553
AjiI CACGTC 4 cut(s) 229, 262, 280, 481
AjnI CCWGG 3 cut(s) 179, 369, 453
AluBI AGCT 3 cut(s) 122, 361, 469
AluI AGCT 3 cut(s) 122, 361, 469
Alw21I GWGCWC 2 cut(s) 471, 632
Alw44I GTGCAC 1 cut(s) 628
AlwI GGATC 3 cut(s) 65, 148, 291
Aor51HI AGCGCT 1 cut(s) 337
AoxI GGCC 3 cut(s) 367, 373, 486
ApaLI GTGCAC 1 cut(s) 628
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 546
AspLEI GCGC 2 cut(s) 235, 338
AspS9I GGNCC 4 cut(s) 367, 373, 403, 445
AsuHPI GGTGA 3 cut(s) 127, 401, 496
AvaII GGWCC 2 cut(s) 403, 445
BaeGI GKGCMC 1 cut(s) 632
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 2 cut(s) 189, 471
BauI CACGAG 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 471, 632
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 3 cut(s) 181, 371, 455
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 349
BfoI RGCGCY 2 cut(s) 236, 339
BisI GCNGC 8 cut(s) 48, 55, 58, 61, 64, 79, 331, 334
BlsI GCNGC 8 cut(s) 49, 56, 59, 62, 65, 80, 332, 335
Bme1390I CCNGG 3 cut(s) 181, 371, 455
Bme18I GGWCC 2 cut(s) 403, 445
BmgBI CACGTC 4 cut(s) 229, 262, 280, 481
BmgT120I GGNCC 4 cut(s) 367, 373, 403, 445
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 181, 371, 455
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 180, 370
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 454
Bse118I RCCGGY 1 cut(s) 488
BseBI CCWGG 3 cut(s) 181, 371, 455
BseDI CCNNGG 2 cut(s) 180, 370
BseLI CCNNNNNNNGG 2 cut(s) 229, 454
BseMII CTCAG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 3 cut(s) 369, 375, 488
BsiHKAI GWGCWC 2 cut(s) 471, 632
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 229, 454
BsnI GGCC 3 cut(s) 369, 375, 488
Bsp1286I GDGCHC 3 cut(s) 189, 471, 632
Bsp143I GATC 5 cut(s) 35, 70, 153, 283, 564
BspANI GGCC 3 cut(s) 369, 375, 488
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 65, 148, 291
BsrFI RCCGGY 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 180, 370
BssMI GATC 5 cut(s) 35, 70, 153, 283, 564
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 3 cut(s) 181, 371, 455
Bst4CI ACNGT 3 cut(s) 142, 169, 613
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 52, 313
BstDEI CTNAG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 236, 339
BstHHI GCGC 2 cut(s) 235, 338
BstKTI GATC 5 cut(s) 38, 73, 156, 286, 567
BstMBI GATC 5 cut(s) 35, 70, 153, 283, 564
BstMWI GCNNNNNNNGC 3 cut(s) 60, 63, 119
BstNI CCWGG 3 cut(s) 181, 371, 455
BstSCI CCNGG 3 cut(s) 179, 369, 453
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 70, 283
BstYI RGATCY 2 cut(s) 70, 283
BsuRI GGCC 3 cut(s) 369, 375, 488
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 4 cut(s) 229, 262, 280, 481
Cac8I GCNNGC 2 cut(s) 52, 313
CfoI GCGC 2 cut(s) 235, 338
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 4 cut(s) 367, 373, 403, 445
CpoI CGGWCCG 1 cut(s) 445
CseI GACGC 2 cut(s) 280, 436
Csp6I GTAC 3 cut(s) 146, 322, 492
CspI CGGWCCG 1 cut(s) 445
CviAII CATG 2 cut(s) 418, 560
CviQI GTAC 3 cut(s) 146, 322, 492
DdeI CTNAG 1 cut(s) 251
DpnI GATC 5 cut(s) 37, 72, 155, 285, 566
DpnII GATC 5 cut(s) 35, 70, 153, 283, 564
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 3 cut(s) 81, 416, 458
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 189, 471
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 403, 445
Eco47III AGCGCT 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 179, 369, 453
EcoRV GATATC 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 189, 471
FaeI CATG 2 cut(s) 421, 563
FaiI YATR 4 cut(s) 408, 419, 440, 561
FatI CATG 2 cut(s) 417, 559
FauI CCCGC 2 cut(s) 43, 304
Fnu4HI GCNGC 8 cut(s) 48, 55, 58, 61, 64, 79, 331, 334
FriOI GRGCYC 2 cut(s) 189, 471
Fsp4HI GCNGC 8 cut(s) 48, 55, 58, 61, 64, 79, 331, 334
FspBI CTAG 1 cut(s) 110
GlaI GCGC 2 cut(s) 234, 337
GluI GCNGC 8 cut(s) 48, 55, 58, 61, 64, 79, 331, 334
HaeII RGCGCY 2 cut(s) 236, 339
HaeIII GGCC 3 cut(s) 369, 375, 488
HapII CCGG 1 cut(s) 489
HgaI GACGC 2 cut(s) 280, 436
HhaI GCGC 2 cut(s) 235, 338
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 421, 563
Hin6I GCGC 2 cut(s) 233, 336
HinP1I GCGC 2 cut(s) 233, 336
HinfI GANTC 3 cut(s) 249, 378, 450
HpaII CCGG 1 cut(s) 489
HphI GGTGA 3 cut(s) 127, 401, 496
Hpy166II GTNNAC 3 cut(s) 259, 265, 630
Hpy188I TCNGA 3 cut(s) 90, 466, 478
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 3 cut(s) 259, 265, 630
Hpy99I CGWCG 2 cut(s) 212, 230
HpyCH4III ACNGT 3 cut(s) 142, 169, 613
HpyCH4IV ACGT 6 cut(s) 228, 261, 279, 423, 480, 494
HpyCH4V TGCA 2 cut(s) 96, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 63, 119
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 6 cut(s) 228, 261, 279, 423, 480, 494
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 421, 563
HspAI GCGC 2 cut(s) 233, 336
Kzo9I GATC 5 cut(s) 35, 70, 153, 283, 564
LmnI GCTCC 4 cut(s) 184, 358, 466, 619
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 110
MaeII ACGT 6 cut(s) 228, 261, 279, 423, 480, 494
MaeIII GTNAC 2 cut(s) 115, 424
MalI GATC 5 cut(s) 37, 72, 155, 285, 566
MboI GATC 5 cut(s) 35, 70, 153, 283, 564
MboII GAAGA 2 cut(s) 38, 307
MflI RGATCY 2 cut(s) 70, 283
MhlI GDGCHC 3 cut(s) 189, 471, 632
MluCI AATT 2 cut(s) 202, 546
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 8 cut(s) 22, 25, 84, 167, 233, 347, 583, 586
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 3 cut(s) 181, 371, 455
MvaI CCWGG 3 cut(s) 181, 371, 455
MwoI GCNNNNNNNGC 3 cut(s) 60, 63, 119
NdeII GATC 5 cut(s) 35, 70, 153, 283, 564
NlaIII CATG 2 cut(s) 421, 563
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 115, 424
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 378, 450
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 8 cut(s) 49, 56, 59, 62, 65, 80, 332, 335
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 3 cut(s) 179, 369, 453
PspGI CCWGG 3 cut(s) 179, 369, 453
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 4 cut(s) 367, 373, 403, 445
PsuI RGATCY 2 cut(s) 70, 283
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 3 cut(s) 147, 323, 493
RsaNI GTAC 3 cut(s) 146, 322, 492
RseI CAYNNNNRTG 1 cut(s) 422
Rsr2I CGGWCCG 1 cut(s) 445
RsrII CGGWCCG 1 cut(s) 445
SacI GAGCTC 1 cut(s) 471
SatI GCNGC 8 cut(s) 48, 55, 58, 61, 64, 79, 331, 334
Sau3AI GATC 5 cut(s) 35, 70, 153, 283, 564
Sau96I GGNCC 4 cut(s) 367, 373, 403, 445
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 3 cut(s) 181, 371, 455
SduI GDGCHC 3 cut(s) 189, 471, 632
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 2 cut(s) 403, 445
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 2 cut(s) 202, 546
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 3 cut(s) 179, 369, 453
TaaI ACNGT 3 cut(s) 142, 169, 613
TaiI ACGT 6 cut(s) 231, 264, 282, 426, 483, 497
TaqI TCGA 1 cut(s) 225
TaqII GACCGA 1 cut(s) 462
TasI AATT 2 cut(s) 202, 546
TatI WGTACW 1 cut(s) 321
TauI GCSGC 7 cut(s) 50, 57, 60, 63, 66, 81, 333
TfiI GAWTC 2 cut(s) 378, 450
TseFI GTSAC 2 cut(s) 115, 424
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 2 cut(s) 115, 424
TspDTI ATGAA 2 cut(s) 434, 548
TspGWI ACGGA 2 cut(s) 196, 280
VneI GTGCAC 1 cut(s) 628
VpaK11BI GGWCC 2 cut(s) 403, 445
XapI RAATTY 1 cut(s) 546
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.