Rroxscaffold_6G00420110

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015399
Physical Location & Seq
Reverse (-)
41457799 .. 41458599
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420110.1

Sequence Viewer

Length: 627 bp
ATGAAAGCCTATGAGACTGTTGACGGTTCTGAGCCTCCTCGCTCTCGGAAGTGCAGAAACATCTGCCTTGCGGTGACCGCCGGCACTGTCGTGATCGTTCTCATTCTGGTCGTACTCTGTTTGACGGTGTTCAAAGCAAAGGACCCGGAAATAACGGTGAACTCAGTCGTTTTGAGGAACTTGGACTTTAACGTCAACAAATTCAGCGTCGACGTGAATATCACTCTCGACGTGCACTTGACGTTGAAGAACCCGAACAAGGTGGGAGTCAAGTACACCAACAGCACCGCCTCGTTGAACTACAGGGGTGAGCTGGTGGGCCAGGTCCCAATCGGAGCCGGAAAGATTTCCGCGGATCAGACCAAGCCCTTGGATATTACCCTCACCGTTATGGGCGACCGGTTCCTCGGAAAAGCACAGGAGCTTTTACCTGATGTGGTCGCCGGTACGATCCCGCTCGACACTGTCGCCAAAATCTCCGGCAAAGTCTCTATCTTGGGTATCTTTAAGGTTCATGTGGTCTCGACCACCTCATGCGATATCAATGTCTATGTCAGAAACAACACCATCGGAGAAGTGTACATTGGCATAGGGGCAGATCGGCTAAGTAGATTCCTTGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

208

Amino Acids

22.36

Weight (kDa)

9.05

Isoelectric Point (pI)

16.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 79 - 173 5e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 353
AciI CCGC 6 cut(s) 71, 78, 288, 351, 353, 455
AclWI GGATC 2 cut(s) 363, 445
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 4 cut(s) 114, 275, 448, 581
AfiI CCNNNNNNNGG 1 cut(s) 259
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 3 cut(s) 133, 247, 298
AjiI CACGTC 2 cut(s) 214, 232
AjnI CCWGG 1 cut(s) 321
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 313, 424
AluI AGCT 2 cut(s) 313, 424
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 3 cut(s) 8, 493, 526
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 2 cut(s) 363, 445
AoxI GGCC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 142, 319, 325
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 85, 169, 320, 376
AvaII GGWCC 2 cut(s) 142, 325
BaeGI GKGCMC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 323
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 8, 493, 526
BfmI CTRYAG 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 146, 323
Bme18I GGWCC 2 cut(s) 142, 325
BmgBI CACGTC 2 cut(s) 214, 232
BmgT120I GGNCC 3 cut(s) 142, 319, 325
BmiI GGNNCC 4 cut(s) 144, 327, 337, 404
BmrFI CCNGG 2 cut(s) 146, 323
BpuMI CCSGG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 3 cut(s) 351, 369, 406
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 3 cut(s) 80, 399, 443
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 3 cut(s) 351, 369, 406
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 21, 177
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 6 cut(s) 81, 146, 339, 400, 444, 480
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 8, 493, 526
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 237
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 4 cut(s) 93, 355, 450, 598
BspACI CCGC 6 cut(s) 71, 78, 288, 351, 353, 455
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 22, 176
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 4 cut(s) 144, 327, 337, 404
BspPI GGATC 2 cut(s) 363, 445
BspTNI GGTCTC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 3 cut(s) 80, 399, 443
BsrGI TGTACA 1 cut(s) 579
BssAI RCCGGY 3 cut(s) 80, 399, 443
BssECI CCNNGG 3 cut(s) 351, 369, 406
BssMI GATC 4 cut(s) 93, 355, 450, 598
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 7 cut(s) 19, 26, 88, 127, 157, 388, 466
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 30, 163, 605
BstDSI CCRYGG 1 cut(s) 351
BstEII GGTNACC 1 cut(s) 73
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 4 cut(s) 96, 358, 453, 601
BstMAI GTCTC 3 cut(s) 8, 493, 526
BstMBI GATC 4 cut(s) 93, 355, 450, 598
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 144, 321
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuRI GGCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 2 cut(s) 214, 232
BtsIMutI CAGTG 2 cut(s) 84, 462
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 3 cut(s) 80, 399, 443
Cfr13I GGNCC 3 cut(s) 142, 319, 325
Cfr42I CCGCGG 1 cut(s) 354
CseI GACGC 1 cut(s) 196
Csp6I GTAC 4 cut(s) 113, 274, 447, 580
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 2 cut(s) 515, 534
CviJI RGCY 8 cut(s) 8, 34, 313, 321, 338, 367, 424, 604
CviKI_1 RGCY 8 cut(s) 8, 34, 313, 321, 338, 367, 424, 604
CviQI GTAC 4 cut(s) 113, 274, 447, 580
DdeI CTNAG 3 cut(s) 30, 163, 605
DpnI GATC 4 cut(s) 95, 357, 452, 600
DpnII GATC 4 cut(s) 93, 355, 450, 598
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 526
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 142, 325
Eco91I GGTNACC 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 142, 325
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 518, 537
FaiI YATR 6 cut(s) 12, 392, 516, 535, 552, 590
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 514, 533
FauI CCCGC 1 cut(s) 462
FblI GTMKAC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 321
HapII CCGG 6 cut(s) 81, 146, 339, 400, 444, 480
HgaI GACGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 518, 537
HincII GTYRAC 3 cut(s) 22, 196, 211
HindII GTYRAC 3 cut(s) 22, 196, 211
HinfI GANTC 2 cut(s) 267, 612
HpaII CCGG 6 cut(s) 81, 146, 339, 400, 444, 480
HphI GGTGA 4 cut(s) 85, 169, 320, 376
Hpy166II GTNNAC 7 cut(s) 22, 160, 196, 211, 235, 276, 580
Hpy188I TCNGA 7 cut(s) 31, 48, 335, 360, 410, 557, 572
Hpy188III TCNNGA 3 cut(s) 91, 227, 523
Hpy8I GTNNAC 7 cut(s) 22, 160, 196, 211, 235, 276, 580
Hpy99I CGWCG 3 cut(s) 212, 215, 233
HpyCH4III ACNGT 7 cut(s) 19, 26, 88, 127, 157, 388, 466
HpyCH4IV ACGT 4 cut(s) 192, 213, 231, 242
HpyCH4V TGCA 2 cut(s) 54, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 3 cut(s) 30, 163, 605
HpySE526I ACGT 4 cut(s) 192, 213, 231, 242
Hsp92II CATG 2 cut(s) 518, 537
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 4 cut(s) 93, 355, 450, 598
LmnI GCTCC 2 cut(s) 335, 421
MaeII ACGT 4 cut(s) 192, 213, 231, 242
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 95, 357, 452, 600
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 93, 355, 450, 598
MboII GAAGA 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 7 cut(s) 45, 48, 168, 301, 392, 416, 541
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 3 cut(s) 189, 507, 625
MslI CAYNNNNRTG 2 cut(s) 89, 389
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 6 cut(s) 81, 146, 339, 400, 444, 480
MspR9I CCNGG 2 cut(s) 146, 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 146
NdeII GATC 4 cut(s) 93, 355, 450, 598
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 518, 537
NlaIV GGNNCC 4 cut(s) 144, 327, 337, 404
NmuCI GTSAC 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 612
PflFI GACNNNGTC 1 cut(s) 464
PinAI ACCGGT 1 cut(s) 399
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PpuMI RGGWCCY 2 cut(s) 142, 325
Psp5II RGGWCCY 2 cut(s) 142, 325
Psp6I CCWGG 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 4 cut(s) 144, 327, 337, 404
PspPI GGNCC 3 cut(s) 142, 319, 325
PspPPI RGGWCCY 2 cut(s) 142, 325
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 4 cut(s) 114, 275, 448, 581
RsaNI GTAC 4 cut(s) 113, 274, 447, 580
RseI CAYNNNNRTG 2 cut(s) 89, 389
SacII CCGCGG 1 cut(s) 354
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 189, 507, 625
Sau3AI GATC 4 cut(s) 93, 355, 450, 598
Sau96I GGNCC 3 cut(s) 142, 319, 325
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 146, 323
SduI GDGCHC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SgrDI CGTCGACG 1 cut(s) 209
SinI GGWCC 2 cut(s) 142, 325
SmiMI CAYNNNNRTG 2 cut(s) 89, 389
Sse9I AATT 1 cut(s) 200
SsiI CCGC 6 cut(s) 71, 78, 288, 351, 353, 455
StyD4I CCNGG 2 cut(s) 144, 321
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 7 cut(s) 19, 26, 88, 127, 157, 388, 466
TaiI ACGT 4 cut(s) 195, 216, 234, 245
TaqI TCGA 4 cut(s) 210, 228, 459, 524
TasI AATT 1 cut(s) 200
TatI WGTACW 2 cut(s) 273, 579
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 3 cut(s) 189, 507, 625
Tru9I TTAA 3 cut(s) 189, 507, 625
TscAI CASTG 2 cut(s) 91, 469
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 17, 503
TspRI CASTG 2 cut(s) 91, 469
Tth111I GACNNNGTC 1 cut(s) 464
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 142, 325
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.