photosystem I assembly
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55250 |
| fragaria_vesca | FvH4_6g50620 FvH4_6g50620 |
| malus_domestica | MD09G1034700.v1.1 MD17G1035000.v1.1 |
| prunus_persica | Prupe.3G283800_v2.0.a1 |
| pyrus_communis | pycom111g02760 pycom17g03230 |
| rosa_chinensis | RchiOBHm_Chr2g0171411 |
| rosa_laevigata | RLG00000022011 |
| rosa_multiflora | Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00080680 |
| rosa_rugosa | Rorug02G0554000 |
| rosa_samantha | Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800 |
| rosa_wichuraiana | Rw2G052040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 341 |
| Acc36I | ACCTGC | 2 cut(s) | 341, 392 |
| AciI | CCGC | 2 cut(s) | 237, 659 |
| AclWI | GGATC | 1 cut(s) | 804 |
| AcsI | RAATTY | 1 cut(s) | 803 |
| AcuI | CTGAAG | 2 cut(s) | 438, 522 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 203 |
| AgsI | TTSAA | 9 cut(s) | 431, 473, 529, 569, 581, 620, 782, 803, 812 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AluBI | AGCT | 4 cut(s) | 137, 506, 637, 776 |
| AluI | AGCT | 4 cut(s) | 137, 506, 637, 776 |
| Alw26I | GTCTC | 1 cut(s) | 99 |
| AlwI | GGATC | 1 cut(s) | 804 |
| Ama87I | CYCGRG | 1 cut(s) | 464 |
| ApeKI | GCWGC | 1 cut(s) | 389 |
| ApoI | RAATTY | 1 cut(s) | 803 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 101, 133 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 423, 777, 807 |
| AspLEI | GCGC | 1 cut(s) | 541 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| AvaI | CYCGRG | 1 cut(s) | 464 |
| BbsI | GAAGAC | 2 cut(s) | 59, 398 |
| BbvI | GCAGC | 1 cut(s) | 376 |
| BccI | CCATC | 3 cut(s) | 66, 547, 676 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 745, 779 |
| BcoDI | GTCTC | 1 cut(s) | 99 |
| BfaI | CTAG | 3 cut(s) | 312, 441, 507 |
| BfmI | CTRYAG | 1 cut(s) | 390 |
| BfuAI | ACCTGC | 2 cut(s) | 341, 392 |
| BglII | AGATCT | 1 cut(s) | 250 |
| BisI | GCNGC | 2 cut(s) | 238, 390 |
| BlsI | GCNGC | 2 cut(s) | 239, 391 |
| BmeT110I | CYCGRG | 1 cut(s) | 464 |
| BmsI | GCATC | 1 cut(s) | 526 |
| BpiI | GAAGAC | 2 cut(s) | 59, 398 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 146, 176 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 203 |
| Bse3DI | GCAATG | 1 cut(s) | 486 |
| BseGI | GGATG | 1 cut(s) | 634 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BseMI | GCAATG | 1 cut(s) | 486 |
| BseMII | CTCAG | 2 cut(s) | 258, 675 |
| BseRI | GAGGAG | 3 cut(s) | 200, 638, 747 |
| BseXI | GCAGC | 1 cut(s) | 376 |
| BsgI | GTGCAG | 1 cut(s) | 420 |
| BsiHKCI | CYCGRG | 1 cut(s) | 464 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BsmAI | GTCTC | 1 cut(s) | 99 |
| BsmBI | CGTCTC | 1 cut(s) | 99 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsoBI | CYCGRG | 1 cut(s) | 464 |
| Bsp143I | GATC | 3 cut(s) | 250, 460, 796 |
| BspACI | CCGC | 2 cut(s) | 237, 659 |
| BspCNI | CTCAG | 2 cut(s) | 259, 676 |
| BspMAI | CTGCAG | 1 cut(s) | 394 |
| BspMI | ACCTGC | 2 cut(s) | 341, 392 |
| BspPI | GGATC | 1 cut(s) | 804 |
| BspQI | GCTCTTC | 1 cut(s) | 511 |
| BsrDI | GCAATG | 1 cut(s) | 486 |
| BssMI | GATC | 3 cut(s) | 250, 460, 796 |
| Bst4CI | ACNGT | 2 cut(s) | 113, 762 |
| Bst6I | CTCTTC | 5 cut(s) | 198, 414, 511, 615, 735 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 398 |
| BstDEI | CTNAG | 3 cut(s) | 267, 560, 684 |
| BstF5I | GGATG | 1 cut(s) | 634 |
| BstHHI | GCGC | 1 cut(s) | 541 |
| BstKTI | GATC | 3 cut(s) | 253, 463, 799 |
| BstMAI | GTCTC | 1 cut(s) | 99 |
| BstMBI | GATC | 3 cut(s) | 250, 460, 796 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 234, 398 |
| BstSFI | CTRYAG | 1 cut(s) | 390 |
| BstV1I | GCAGC | 1 cut(s) | 376 |
| BstV2I | GAAGAC | 2 cut(s) | 59, 398 |
| BstX2I | RGATCY | 2 cut(s) | 250, 796 |
| BstYI | RGATCY | 2 cut(s) | 250, 796 |
| BtgZI | GCGATG | 1 cut(s) | 243 |
| BtsCI | GGATG | 1 cut(s) | 634 |
| BveI | ACCTGC | 2 cut(s) | 341, 392 |
| CfoI | GCGC | 1 cut(s) | 541 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviJI | RGCY | 7 cut(s) | 137, 317, 358, 506, 575, 637, 776 |
| CviKI_1 | RGCY | 7 cut(s) | 137, 317, 358, 506, 575, 637, 776 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 3 cut(s) | 267, 560, 684 |
| DpnI | GATC | 3 cut(s) | 252, 462, 798 |
| DpnII | GATC | 3 cut(s) | 250, 460, 796 |
| Eam1104I | CTCTTC | 5 cut(s) | 198, 414, 511, 615, 735 |
| EarI | CTCTTC | 5 cut(s) | 198, 414, 511, 615, 735 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 522 |
| Eco88I | CYCGRG | 1 cut(s) | 464 |
| EcoRI | GAATTC | 1 cut(s) | 803 |
| Esp3I | CGTCTC | 1 cut(s) | 99 |
| FaiI | YATR | 6 cut(s) | 143, 324, 366, 591, 752, 824 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 2 cut(s) | 238, 390 |
| FokI | GGATG | 1 cut(s) | 641 |
| Fsp4HI | GCNGC | 2 cut(s) | 238, 390 |
| FspBI | CTAG | 3 cut(s) | 312, 441, 507 |
| GlaI | GCGC | 1 cut(s) | 540 |
| GluI | GCNGC | 2 cut(s) | 238, 390 |
| HhaI | GCGC | 1 cut(s) | 541 |
| Hin6I | GCGC | 1 cut(s) | 539 |
| HinP1I | GCGC | 1 cut(s) | 539 |
| HindIII | AAGCTT | 1 cut(s) | 635 |
| HinfI | GANTC | 5 cut(s) | 207, 308, 424, 696, 827 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy188I | TCNGA | 4 cut(s) | 206, 418, 606, 685 |
| Hpy188III | TCNNGA | 5 cut(s) | 302, 428, 464, 578, 800 |
| Hpy99I | CGWCG | 3 cut(s) | 113, 260, 342 |
| HpyCH4III | ACNGT | 2 cut(s) | 113, 762 |
| HpyCH4V | TGCA | 3 cut(s) | 392, 401, 787 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 234, 398 |
| HpyF3I | CTNAG | 3 cut(s) | 267, 560, 684 |
| HspAI | GCGC | 1 cut(s) | 539 |
| Kzo9I | GATC | 3 cut(s) | 250, 460, 796 |
| LguI | GCTCTTC | 1 cut(s) | 511 |
| LpnPI | CCDG | 3 cut(s) | 315, 336, 387 |
| Lsp1109I | GCAGC | 1 cut(s) | 376 |
| LweI | GCATC | 1 cut(s) | 526 |
| MaeI | CTAG | 3 cut(s) | 312, 441, 507 |
| MaeIII | GTNAC | 2 cut(s) | 10, 436 |
| MalI | GATC | 3 cut(s) | 252, 462, 798 |
| MboI | GATC | 3 cut(s) | 250, 460, 796 |
| MflI | RGATCY | 2 cut(s) | 250, 796 |
| MluCI | AATT | 3 cut(s) | 129, 219, 803 |
| MlyI | GAGTC | 1 cut(s) | 201 |
| MmeI | TCCRAC | 1 cut(s) | 355 |
| MnlI | CCTC | 9 cut(s) | 88, 221, 335, 602, 616, 619, 718, 725, 730 |
| MroXI | GAANNNNTTC | 3 cut(s) | 423, 777, 807 |
| MseI | TTAA | 3 cut(s) | 642, 653, 832 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 234, 398 |
| NdeII | GATC | 3 cut(s) | 250, 460, 796 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| PaeR7I | CTCGAG | 1 cut(s) | 464 |
| PaqCI | CACCTGC | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 1 cut(s) | 511 |
| PdmI | GAANNNNTTC | 3 cut(s) | 423, 777, 807 |
| PfeI | GAWTC | 3 cut(s) | 308, 424, 696 |
| PkrI | GCNGC | 2 cut(s) | 239, 391 |
| PleI | GAGTC | 1 cut(s) | 201 |
| PpsI | GAGTC | 1 cut(s) | 201 |
| PstI | CTGCAG | 1 cut(s) | 394 |
| PsuI | RGATCY | 2 cut(s) | 250, 796 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SapI | GCTCTTC | 1 cut(s) | 511 |
| SaqAI | TTAA | 3 cut(s) | 642, 653, 832 |
| SatI | GCNGC | 2 cut(s) | 238, 390 |
| Sau3AI | GATC | 3 cut(s) | 250, 460, 796 |
| SchI | GAGTC | 1 cut(s) | 201 |
| SfaNI | GCATC | 1 cut(s) | 526 |
| SfcI | CTRYAG | 1 cut(s) | 390 |
| Sfr274I | CTCGAG | 1 cut(s) | 464 |
| SlaI | CTCGAG | 1 cut(s) | 464 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| Sse9I | AATT | 3 cut(s) | 129, 219, 803 |
| SsiI | CCGC | 2 cut(s) | 237, 659 |
| SspMI | CTAG | 3 cut(s) | 312, 441, 507 |
| TaaI | ACNGT | 2 cut(s) | 113, 762 |
| TaqI | TCGA | 5 cut(s) | 108, 133, 217, 258, 465 |
| TasI | AATT | 3 cut(s) | 129, 219, 803 |
| TatI | WGTACW | 1 cut(s) | 296 |
| TauI | GCSGC | 1 cut(s) | 240 |
| TfiI | GAWTC | 3 cut(s) | 308, 424, 696 |
| Tru1I | TTAA | 3 cut(s) | 642, 653, 832 |
| Tru9I | TTAA | 3 cut(s) | 642, 653, 832 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 1 cut(s) | 389 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 3 cut(s) | 246, 475, 806 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| XapI | RAATTY | 1 cut(s) | 803 |
| XhoI | CTCGAG | 1 cut(s) | 464 |
| XmnI | GAANNNNTTC | 3 cut(s) | 423, 777, 807 |
| XspI | CTAG | 3 cut(s) | 312, 441, 507 |