Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Forward (+)

25768228 .. 25769607

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTCGGTGTGTCATCCACTTCGCCTTCTCTCAAAGCCAACTTCAACCCCCAAAGCTTCACCGCCACAAGCCATCTCTGCAACTCTACCTGCAAACCCGCTTCAACTTCTCTGCTATACCTTGGTCAAATTTATGGCGACACCACGAGACCCAACAGGTCCAAAATGCCAAACTCAAATGGGTTCTTCTCTGTTAAAGCTTACATGGATAATCCAAACTCCATCTCCAGCTTCGCCAGCAAGGTCATTGGCTCTCTCCCTGTTGTTGGGTTAATAGCAAGAATTCTGAGCGATGAAGGTGGCCTTGGTGGAGACATTATTGATTTTGCGGAGTTTCGAAGGCGGGTGGGGAAGAAGTGTACAACTTCTGATTCCCGAGCTTTTTATGAATTTCAAGATCGACGTGGCCGGGCAGGGGATCCTCTGTATGTTCTACTATGCTGCTGGGTAGCAGCCATTGGTGCTGGTCTTCTGAAATCTGAGGAGATTTTAGAAGGGGCGGCGAGGCTGCGGGTTTCGAATGATATCGAATTTGAAGAGCAGAATTTCATTTCCTTGATCAACGAGGCAAAAGAGAGAAGGGCAAAACTAAAGGCTGCTACCCCAATTATCCCATTGGAGATTCGAATCGAGAAGGCTCTTGAAGGGATCTACCTCTGCTGCTTTGGGAAGGACCCTATAGAAGAAGAAGACGAGAGACTTCTAAATGTCATGCTTAAGGCTGTTTATCCATCCGTTGAGCAGTCTGAGATACAACGGATTGTCAAGGACAAGGCACAGAAAGTAGCTGAAGGCAGTGATGGAGGCAGTGTTCGAGAGCCGAAACCCCTATCAAAAGAAGCTGTTACAATGCAAATGAAGGACCTCCAATTCCTTCAACAAAATAGAGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.87

Weight (kDa)

7.5

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AciI	CCGC	6 cut(s)	63, 99, 329, 343, 500, 511
AclWI	GGATC	3 cut(s)	413, 426, 656
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	5 cut(s)	129, 282, 389, 530, 544
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	266, 415
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	6 cut(s)	46, 105, 395, 536, 644, 878
AjiI	CACGTC	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AloI	GAACNNNNNNTCC	2 cut(s)	795, 827
AluBI	AGCT	6 cut(s)	57, 200, 231, 380, 788, 842
AluI	AGCT	6 cut(s)	57, 200, 231, 380, 788, 842
Alw26I	GTCTC	3 cut(s)	142, 306, 691
AlwI	GGATC	3 cut(s)	413, 426, 656
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	2 cut(s)	301, 406
ApeKI	GCWGC	5 cut(s)	441, 452, 508, 596, 660
ApoI	RAATTY	5 cut(s)	129, 282, 389, 530, 544
AspS9I	GGNCC	3 cut(s)	159, 673, 862
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	3 cut(s)	337, 518, 625
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	3 cut(s)	159, 673, 862
BamHI	GGATCC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	461, 696
BbvI	GCAGC	5 cut(s)	428, 464, 495, 583, 647
BccI	CCATC	4 cut(s)	81, 230, 739, 794
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	142, 306, 691
BfmI	CTRYAG	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	6 cut(s)	442, 453, 501, 509, 597, 661
BlsI	GCNGC	6 cut(s)	443, 454, 502, 510, 598, 662
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	3 cut(s)	159, 673, 862
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	159, 673, 862
BmiI	GGNNCC	2 cut(s)	420, 675
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	461, 696
BpmI	CTGGAG	1 cut(s)	211
Bpu14I	TTCGAA	3 cut(s)	337, 518, 625
BpuMI	CCSGG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	121, 304
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 415
Bse8I	GATNNNNATC	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	121, 304
BseGI	GGATG	2 cut(s)	14, 731
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	2 cut(s)	266, 415
BseMII	CTCAG	3 cut(s)	278, 471, 738
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	5 cut(s)	428, 464, 495, 583, 647
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	2 cut(s)	303, 408
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	266, 415
BsmAI	GTCTC	3 cut(s)	142, 306, 691
BsnI	GGCC	2 cut(s)	303, 408
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	375
Bsp119I	TTCGAA	3 cut(s)	337, 518, 625
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	397, 418, 558, 648
BspACI	CCGC	6 cut(s)	63, 99, 329, 343, 500, 511
BspANI	GGCC	2 cut(s)	303, 408
BspCNI	CTCAG	3 cut(s)	279, 472, 739
BspLI	GGNNCC	2 cut(s)	420, 675
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	413, 426, 656
BspQI	GCTCTTC	1 cut(s)	531
BspT104I	TTCGAA	3 cut(s)	337, 518, 625
BspTI	CTTAAG	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	121, 304
BssMI	GATC	4 cut(s)	397, 418, 558, 648
BssSI	CACGAG	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	121, 304
Bst2BI	CACGAG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	359
BstBI	TTCGAA	3 cut(s)	337, 518, 625
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	287, 480, 747
BstF5I	GGATG	2 cut(s)	14, 731
BstKTI	GATC	4 cut(s)	400, 421, 561, 651
BstMAI	GTCTC	3 cut(s)	142, 306, 691
BstMBI	GATC	4 cut(s)	397, 418, 558, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 237, 461
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	5 cut(s)	428, 464, 495, 583, 647
BstV2I	GAAGAC	2 cut(s)	461, 696
BstX2I	RGATCY	2 cut(s)	418, 648
BstYI	RGATCY	2 cut(s)	418, 648
BsuRI	GGCC	2 cut(s)	303, 408
BtgZI	GCGATG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	14, 731
BtsI	GCAGTG	2 cut(s)	802, 814
BtsIMutI	CAGTG	2 cut(s)	802, 814
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	159, 673, 862
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	205, 712
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	3 cut(s)	287, 480, 747
DpnI	GATC	4 cut(s)	399, 420, 560, 650
DpnII	GATC	4 cut(s)	397, 418, 558, 648
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	121, 304
Eco31I	GGTCTC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	3 cut(s)	159, 673, 862
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	673, 862
EcoRI	GAATTC	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	121, 304
ErhI	CCWWGG	2 cut(s)	121, 304
FaeI	CATG	2 cut(s)	208, 715
FaiI	YATR	8 cut(s)	118, 135, 206, 387, 429, 439, 680, 713
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	2 cut(s)	204, 711
FauI	CCCGC	3 cut(s)	106, 336, 504
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	6 cut(s)	442, 453, 501, 509, 597, 661
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	6 cut(s)	442, 453, 501, 509, 597, 661
GluI	GCNGC	6 cut(s)	442, 453, 501, 509, 597, 661
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	303, 408
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	2 cut(s)	208, 715
HindIII	AAGCTT	2 cut(s)	55, 198
HinfI	GANTC	3 cut(s)	371, 622, 627
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	5 cut(s)	288, 370, 474, 481, 748
Hpy188III	TCNNGA	5 cut(s)	375, 395, 631, 641, 815
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	81, 93, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 237, 461
HpyF3I	CTNAG	3 cut(s)	287, 480, 747
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	208, 715
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	397, 418, 558, 648
LguI	GCTCTTC	1 cut(s)	531
LpnPI	CCDG	9 cut(s)	103, 142, 241, 250, 273, 399, 422, 430, 450
Lsp1109I	GCAGC	5 cut(s)	428, 464, 495, 583, 647
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	4 cut(s)	399, 420, 560, 650
MboI	GATC	4 cut(s)	397, 418, 558, 648
MboII	GAAGA	7 cut(s)	178, 364, 461, 548, 695, 698, 701
MflI	RGATCY	2 cut(s)	418, 648
MluCI	AATT	7 cut(s)	129, 282, 389, 530, 544, 606, 869
MnlI	CCTC	7 cut(s)	432, 475, 498, 559, 665, 797, 875
MseI	TTAA	3 cut(s)	195, 272, 717
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	78, 237, 461
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	397, 418, 558, 648
NlaIII	CATG	2 cut(s)	208, 715
NlaIV	GGNNCC	2 cut(s)	420, 675
NspV	TTCGAA	3 cut(s)	337, 518, 625
PciSI	GCTCTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	371, 622, 627
PkrI	GCNGC	6 cut(s)	443, 454, 502, 510, 598, 662
PpuMI	RGGWCCY	2 cut(s)	673, 862
Psp5II	RGGWCCY	2 cut(s)	673, 862
PspFI	CCCAGC	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	420, 675
PspPI	GGNCC	3 cut(s)	159, 673, 862
PspPPI	RGGWCCY	2 cut(s)	673, 862
PsuI	RGATCY	2 cut(s)	418, 648
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	195, 272, 717
SatI	GCNGC	6 cut(s)	442, 453, 501, 509, 597, 661
Sau3AI	GATC	4 cut(s)	397, 418, 558, 648
Sau96I	GGNCC	3 cut(s)	159, 673, 862
ScrFI	CCNGG	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	3 cut(s)	337, 518, 625
SinI	GGWCC	3 cut(s)	159, 673, 862
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	7 cut(s)	129, 282, 389, 530, 544, 606, 869
SsiI	CCGC	6 cut(s)	63, 99, 329, 343, 500, 511
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	121, 304
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	7 cut(s)	337, 400, 518, 528, 625, 630, 814
TasI	AATT	7 cut(s)	129, 282, 389, 530, 544, 606, 869
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	3 cut(s)	371, 622, 627
Tru1I	TTAA	3 cut(s)	195, 272, 717
Tru9I	TTAA	3 cut(s)	195, 272, 717
TscAI	CASTG	2 cut(s)	802, 814
TseI	GCWGC	5 cut(s)	441, 452, 508, 596, 660
TspDTI	ATGAA	4 cut(s)	309, 402, 538, 872
TspGWI	ACGGA	2 cut(s)	724, 772
TspRI	CASTG	2 cut(s)	802, 814
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	3 cut(s)	159, 673, 862
XapI	RAATTY	5 cut(s)	129, 282, 389, 530, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.