Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2120357 .. 2120671

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1034700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTGGTTGTGTCATCCACTTCCTTTTCAATCAAATCCAACTTCACTCCCCAGCTCTCCACCGCTGTAAACCACCACCTCAGCAACCCTTCCGACCACCCCATTTCGCCTTCTCTGCTATACCTCGGCCAAATCTATGGGGACCCCACGAGACACAAGAATTCCAAAGCTCCAAGCTCAAGTGGATTCTTCTCTGTTAAAGCTTACATGGACAATCCAAATTCCATCCCCAGCTTCGCTAGCAAGGTCATCGGCTCCCTCCCAGTTGTCGGGTTGATAGCGAGGATTCTCAGCGACGAAGGCAGCCTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.0

Weight (kDa)

9.16

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	160, 220
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	30
AluBI	AGCT	5 cut(s)	55, 170, 177, 203, 234
AluI	AGCT	5 cut(s)	55, 170, 177, 203, 234
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	2 cut(s)	160, 220
AspS9I	GGNCC	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	143, 144, 256
BmrI	ACTGGG	1 cut(s)	257
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	124, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	124, 307
BseGI	GGATG	2 cut(s)	14, 225
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	94, 304
BseNI	ACTGG	1 cut(s)	263
BseYI	CCCAGC	2 cut(s)	51, 230
BshFI	GGCC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	93, 303
BspLI	GGNNCC	3 cut(s)	143, 144, 256
BspOI	GCTAGC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	124, 307
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	80, 290
BstF5I	GGATG	2 cut(s)	14, 225
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 240, 300
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	14, 225
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	8 cut(s)	55, 129, 170, 177, 203, 234, 255, 306
CviKI_1	RGCY	8 cut(s)	55, 129, 170, 177, 203, 234, 255, 306
DdeI	CTNAG	2 cut(s)	80, 290
EaeI	YGGCCR	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	160
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	121, 138, 209
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	304
GsaI	CCCAGC	2 cut(s)	55, 234
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	186, 286
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	99, 120, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 240, 300
HpyF3I	CTNAG	2 cut(s)	80, 290
Hsp92II	CATG	1 cut(s)	211
KflI	GGGWCCC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	175, 260
LpnPI	CCDG	3 cut(s)	65, 244, 276
MaeI	CTAG	1 cut(s)	240
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	2 cut(s)	160, 220
MmeI	TCCRAC	2 cut(s)	63, 117
MnlI	CCTC	4 cut(s)	89, 134, 269, 276
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	115, 240, 300
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	143, 144, 256
NmeAIII	GCCGAG	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	186, 286
PkrI	GCNGC	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	51, 230
PspN4I	GGNNCC	3 cut(s)	143, 144, 256
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	8 cut(s)	57, 81, 126, 172, 179, 205, 236, 249
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	2 cut(s)	160, 220
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	240
TasI	AATT	2 cut(s)	160, 220
TfiI	GAWTC	2 cut(s)	186, 286
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	160, 220
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.