Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Reverse (-)

68140771 .. 68141720

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0554000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGGACAAGACTGAATGCTGAGCTCTTGAAGGTAATATGGAACCGGGACCAATTTATTGCCTGCCATTGCTTTCCAAATACTGAAGGTCGAGTCTTTCAGCAATCAAAGCACTTCCATTGTTCTACCCGACTCCACGAGCGACAACTTTGTTTGTTGTATGTGAGATTATTTGCTGTTGGTTGCTTAGAGTTGCCTTGTGTGGAGCGTCTCTATTCCAAGGTGGTCAACTGGAGAGCTGAACGTGCATTTGACCAAAGGCTGGCTTCTTGCATTGCTCTTAAGCTAGTCGAGTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.88

Weight (kDa)

8.99

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	3 cut(s)	25, 239, 286
AluI	AGCT	3 cut(s)	25, 239, 286
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	287, 301
BfrI	CTTAAG	1 cut(s)	281
BlpI	GCTNAGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	44, 50
BmrFI	CCNGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	67, 273
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	67, 273
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	44, 50
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	67, 273
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	64, 264
BstDEI	CTNAG	2 cut(s)	21, 187
BstMAI	GTCTC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 245
BstSCI	CCNGG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	64, 264
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	197
CviJI	RGCY	5 cut(s)	25, 239, 262, 266, 286
CviKI_1	RGCY	5 cut(s)	25, 239, 262, 266, 286
DdeI	CTNAG	2 cut(s)	21, 187
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	215
FaiI	YATR	2 cut(s)	40, 162
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	287, 301
GsuI	CTGGAG	1 cut(s)	253
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	93, 132
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	6, 229
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 229
HpyAV	CCTTC	2 cut(s)	25, 80
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	248, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 245
HpyF3I	CTNAG	2 cut(s)	21, 187
HpySE526I	ACGT	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	59, 76, 217, 248
MaeI	CTAG	2 cut(s)	287, 301
MaeII	ACGT	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	102, 126
MseI	TTAA	1 cut(s)	282
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	109, 245
NciI	CCSGG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	44, 50
PctI	GAATGC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	262
PleI	GAGTC	2 cut(s)	101, 126
PpsI	GAGTC	2 cut(s)	101, 126
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	44, 50
PspPI	GGNCC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	102, 126
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 36, 91, 225, 241, 247, 288
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	53
SspMI	CTAG	2 cut(s)	287, 301
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	91, 291
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	49
XspI	CTAG	2 cut(s)	287, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.