Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Reverse (-)

1647945 .. 1649180

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGGTTATGTCATCCACTTCCCCTTCCCCTTCTATCAAATCCAACTTCACTCCCCAGCTCTCCACCGCCGCAAACCACCACCTCGGCAACCCTTTTGACCACGCCATTTCGCCATCTCTGCTACACCTCGGCCAAATCTATGGCGACCCCACGAGACACAAGAATTCCAAAGCTCCAAGCTCAAGTGGATTCTTCTCTGTTAAAGCTTACATGGACAATCCAAATTCCATCTCCAGCTTTGCCAGCAAGGTCATCGGTTCGCTCCCGGTTGTCGGGTTGATAGCGAGGATTCTCAGCGACGAAGGCGGCCTCGGCGGAGACACGGTTGATTTCGCAGAGTTTAGGAGGCGGGTGGGGAAGAAGCGCACTACTGATGATTCTAGAGCTTTTTATGAGGGATCCTCTGTATGTTCTAATGTGCTGTTGGGTAGCAGCCATTGGTGCGGTCTTCAGAAATCCGAGGAGATTTTAGAAGGGGCGGCGAGGCTGCGTGTTTCAAATGATATCAAATTCGAAGAGCAGAATTTCATTTCCTTGATCAACGAGGCAAAAGAGGCGCCTACGGCGATTATCCCAATGGAGATTGGGGTTGAGAAAGCCCTTGAAGGGATTTACCTCTGTTGCTTTGGGAAGGATCCGATAGAAGAAGAAGACGAGAGACTTCTAAATGTAATGCTTAGGGCGGTTTATCAATCCGTTGAGCGGTCTGAGCTACAACGGATTATTAACGAAAAGGCACAGAAAGTAGCCGAAGGCAGTACTGACGGCAGTGTTCGAGAGCCAAAGCCCCTGTCGAATGAAGCTGTTCAAATGCAGAAGGACCTCCAGTTCCTTCAACAAAATAGGGATAGAGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.55

Weight (kDa)

5.62

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	9 cut(s)	69, 72, 309, 318, 352, 447, 482, 686, 706
AclWI	GGATC	4 cut(s)	396, 409, 632, 645
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	4 cut(s)	166, 226, 512, 526
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	3 cut(s)	275, 609, 705
AgsI	TTSAA	4 cut(s)	501, 608, 812, 839
AloI	GAACNNNNNNTCC	2 cut(s)	815, 847
AluBI	AGCT	8 cut(s)	61, 176, 183, 209, 240, 389, 715, 806
AluI	AGCT	8 cut(s)	61, 176, 183, 209, 240, 389, 715, 806
Alw26I	GTCTC	4 cut(s)	151, 315, 655, 849
AlwI	GGATC	4 cut(s)	396, 409, 632, 645
AoxI	GGCC	2 cut(s)	133, 310
ApeKI	GCWGC	2 cut(s)	435, 490
ApoI	RAATTY	4 cut(s)	166, 226, 512, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	2 cut(s)	369, 562
AspS9I	GGNCC	1 cut(s)	823
AsuC2I	CCSGG	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	823
BamHI	GGATCC	2 cut(s)	401, 637
BanI	GGYRCC	1 cut(s)	559
BauI	CACGAG	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	443, 660
BbvI	GCAGC	2 cut(s)	447, 477
BccI	CCATC	2 cut(s)	124, 239
BceAI	ACGGC	2 cut(s)	582, 784
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	4 cut(s)	151, 315, 655, 849
BfaI	CTAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	563
BisI	GCNGC	5 cut(s)	72, 310, 436, 483, 491
BlsI	GCNGC	5 cut(s)	73, 311, 437, 484, 492
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	823
BmiI	GGNNCC	3 cut(s)	403, 561, 639
BmrFI	CCNGG	1 cut(s)	269
BpiI	GAAGAC	2 cut(s)	443, 660
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	2 cut(s)	220, 812
Bpu10I	CCTNAGC	1 cut(s)	680
Bpu14I	TTCGAA	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	85, 130, 313, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 609, 705
Bse1I	ACTGG	1 cut(s)	829
BseDI	CCNNGG	4 cut(s)	85, 130, 313, 462
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	275, 609, 705
BseMII	CTCAG	2 cut(s)	310, 702
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	447, 477
BseYI	CCCAGC	1 cut(s)	57
BshFI	GGCC	2 cut(s)	135, 312
BshNI	GGYRCC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	275, 609, 705
BsmAI	GTCTC	4 cut(s)	151, 315, 655, 849
BsnI	GGCC	2 cut(s)	135, 312
Bsp119I	TTCGAA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	401, 540, 637
BspACI	CCGC	9 cut(s)	69, 72, 309, 318, 352, 447, 482, 686, 706
BspANI	GGCC	2 cut(s)	135, 312
BspCNI	CTCAG	2 cut(s)	309, 703
BspLI	GGNNCC	3 cut(s)	403, 561, 639
BspPI	GGATC	4 cut(s)	396, 409, 632, 645
BspQI	GCTCTTC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	559
BsrBI	CCGCTC	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	829
BssECI	CCNNGG	4 cut(s)	85, 130, 313, 462
BssMI	GATC	3 cut(s)	401, 540, 637
BssNI	GRCGYC	1 cut(s)	560
BssSI	CACGAG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	296, 680, 711
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	369, 562
BstKTI	GATC	3 cut(s)	404, 543, 640
BstMAI	GTCTC	4 cut(s)	151, 315, 655, 849
BstMBI	GATC	3 cut(s)	401, 540, 637
BstMWI	GCNNNNNNNGC	8 cut(s)	121, 246, 306, 315, 444, 557, 566, 712
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	447, 477
BstV2I	GAAGAC	2 cut(s)	443, 660
BstX2I	RGATCY	2 cut(s)	401, 637
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	401, 637
BsuRI	GGCC	2 cut(s)	135, 312
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	2 cut(s)	369, 562
Cfr13I	GGNCC	1 cut(s)	823
Csp6I	GTAC	1 cut(s)	762
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	3 cut(s)	296, 680, 711
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	3 cut(s)	403, 542, 639
DpnII	GATC	3 cut(s)	401, 540, 637
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	508
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	11, 144, 215, 396, 412
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	5 cut(s)	72, 310, 436, 483, 491
Fsp4HI	GCNGC	5 cut(s)	72, 310, 436, 483, 491
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	368, 561
GluI	GCNGC	5 cut(s)	72, 310, 436, 483, 491
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	2 cut(s)	220, 812
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	135, 312
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	2 cut(s)	369, 562
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	2 cut(s)	367, 560
HinP1I	GCGC	2 cut(s)	367, 560
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	192, 292, 380
HpaII	CCGG	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	456, 463, 642, 712
Hpy188III	TCNNGA	2 cut(s)	384, 779
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	9 cut(s)	36, 42, 299, 470, 602, 628, 749, 814, 845
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	817
HpyF10VI	GCNNNNNNNGC	8 cut(s)	121, 246, 306, 315, 444, 557, 566, 712
HpyF3I	CTNAG	3 cut(s)	296, 680, 711
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	2 cut(s)	367, 560
KasI	GGCGCC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	401, 540, 637
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	181, 270
LpnPI	CCDG	6 cut(s)	71, 250, 259, 282, 806, 842
Lsp1109I	GCAGC	2 cut(s)	447, 477
MaeI	CTAG	1 cut(s)	384
MalI	GATC	3 cut(s)	403, 542, 639
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	3 cut(s)	401, 540, 637
MboII	GAAGA	7 cut(s)	187, 373, 443, 530, 659, 662, 665
MflI	RGATCY	2 cut(s)	401, 637
MluCI	AATT	4 cut(s)	166, 226, 512, 526
Mly113I	GGCGCC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	2 cut(s)	204, 729
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	8 cut(s)	121, 246, 306, 315, 444, 557, 566, 712
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	3 cut(s)	401, 540, 637
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	403, 561, 639
NmeAIII	GCCGAG	3 cut(s)	66, 111, 294
NspV	TTCGAA	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	192, 292, 380
PkrI	GCNGC	5 cut(s)	73, 311, 437, 484, 492
PluTI	GGCGCC	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	823
Psp5II	RGGWCCY	1 cut(s)	823
PspFI	CCCAGC	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	403, 561, 639
PspPI	GGNCC	1 cut(s)	823
PspPPI	RGGWCCY	1 cut(s)	823
PsuI	RGATCY	2 cut(s)	401, 637
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	204, 729
SatI	GCNGC	5 cut(s)	72, 310, 436, 483, 491
Sau3AI	GATC	3 cut(s)	401, 540, 637
Sau96I	GGNCC	1 cut(s)	823
ScaI	AGTACT	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	269
SfoI	GGCGCC	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	823
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	4 cut(s)	166, 226, 512, 526
SsiI	CCGC	9 cut(s)	69, 72, 309, 318, 352, 447, 482, 686, 706
SspDI	GGCGCC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	516, 778, 797
TasI	AATT	4 cut(s)	166, 226, 512, 526
TatI	WGTACW	1 cut(s)	761
TauI	GCSGC	3 cut(s)	74, 312, 485
TfiI	GAWTC	3 cut(s)	192, 292, 380
Tru1I	TTAA	2 cut(s)	204, 729
Tru9I	TTAA	2 cut(s)	204, 729
TscAI	CASTG	1 cut(s)	778
TseI	GCWGC	2 cut(s)	435, 490
TspDTI	ATGAA	2 cut(s)	520, 816
TspGWI	ACGGA	2 cut(s)	688, 736
TspRI	CASTG	1 cut(s)	778
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	4 cut(s)	166, 226, 512, 526
XbaI	TCTAGA	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.