Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Reverse (-)

3626935 .. 3628284

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGGTTGTGGCATCCACTCTCCCTTCTTCATCTCTCAAACTCAAACCCAATCCCACTCCCCAAATCTTCGTCACCAAAAGCCATCTCTGCACCACCACCGGCAAACCCACCTCACCTTCTCTGCTTTACATTGGCCAAATCTATGGCGACACTAGTAAACCCAACAGGTCCAAACTCCCAAACTCAACTGGGTTCTTCTCCGTCAAAGCTTACGTCGACAACCCCAACTCCATCTCCAGCTTCGCCAGCAAGGTCATTGGTTCTCTCCCCGTCGTGGGATTAATAGCTCGCATTCTGAGCGATGAGGGAGGCGTTGGTGGTGAGATTATCGATTTCGCTGAGTTTCGGAGAAGGGTAGGGAAGAAATGTACTATTACTGATTCCCGAGCCTTTTATGAGTTCCAAGAACGACGAGGCCGGGCAGGGGATCCTCTGTATGTGCTAATGTGCTGCTATGTAGCTGCGGTTGGTGCTGGTCTTCTCAAGTCTGAAGAGATTTTAGAAGGCGCCGCGAGGCTGAGGGTTTCGAATGATATTGAGTTTGAAGAGCAGAATTTCATTGCCTTGATGAATGAGGCAAAAGAGAGAAGGGCAAAGATAAAGGCTGATATACAAGTCATTCCAATGGAGAGTCGGGTTGAGAAGGCGCTTGAAGCGATTTACATATGTTGCTTTGGGAGGGATCCGGTAGAAGAACAAGATGAGAATCTTCTAAATGTGATGCTTAGGGCTGTGTTTCCATCTGTTGAGAAGTCCGAGATACAGCGGATTATCAGGGAAAAGGCACAGAAGGTAGCTGAAGGTGGTGATGATGGCAGATCCCCGGAGCCAAAGCCCTTATCGAAAGAAGCTGTTAAGATGCAAATGAAGGACCTCGAGTTCCTCCAACAAAATAGAGACAATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.6

Weight (kDa)

7.52

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	515
AciI	CCGC	3 cut(s)	467, 513, 769
AclWI	GGATC	5 cut(s)	425, 438, 680, 693, 816
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	2 cut(s)	513, 822
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	3 cut(s)	277, 278, 427
AgsI	TTSAA	2 cut(s)	548, 656
AhlI	ACTAGT	1 cut(s)	155
AloI	GAACNNNNNNTCC	2 cut(s)	866, 898
AluBI	AGCT	6 cut(s)	212, 243, 290, 464, 800, 854
AluI	AGCT	6 cut(s)	212, 243, 290, 464, 800, 854
Alw26I	GTCTC	1 cut(s)	894
AlwI	GGATC	5 cut(s)	425, 438, 680, 693, 816
Ama87I	CYCGRG	2 cut(s)	387, 878
AoxI	GGCC	2 cut(s)	136, 418
ApeKI	GCWGC	2 cut(s)	453, 464
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AseI	ATTAAT	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	512, 652
AspS9I	GGNCC	2 cut(s)	171, 874
AsuC2I	CCSGG	2 cut(s)	422, 827
AsuHPI	GGTGA	4 cut(s)	67, 108, 335, 821
AsuII	TTCGAA	1 cut(s)	530
AvaI	CYCGRG	2 cut(s)	387, 878
AvaII	GGWCC	2 cut(s)	171, 874
BalI	TGGCCA	1 cut(s)	138
BamHI	GGATCC	2 cut(s)	430, 685
BanI	GGYRCC	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	440, 451
BccI	CCATC	4 cut(s)	93, 242, 751, 809
BcnI	CCSGG	2 cut(s)	422, 827
BcoDI	GTCTC	1 cut(s)	894
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	2 cut(s)	513, 653
BisI	GCNGC	3 cut(s)	454, 465, 513
BlsI	GCNGC	3 cut(s)	455, 466, 514
Bme1390I	CCNGG	2 cut(s)	422, 827
Bme18I	GGWCC	2 cut(s)	171, 874
BmeT110I	CYCGRG	2 cut(s)	387, 878
BmgT120I	GGNCC	2 cut(s)	171, 874
BmiI	GGNNCC	4 cut(s)	432, 511, 687, 831
BmrFI	CCNGG	2 cut(s)	422, 827
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	3 cut(s)	23, 714, 852
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	2 cut(s)	521, 728
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	422, 827
Bsa29I	ATCGAT	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	825
BsaWI	WCCGGW	1 cut(s)	688
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 221, 245, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 278, 427
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	1 cut(s)	14
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	3 cut(s)	277, 278, 427
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	3 cut(s)	290, 333, 512
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	440, 451
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	138, 420
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	333
BsiHKCI	CYCGRG	2 cut(s)	387, 878
BsiSI	CCGG	4 cut(s)	102, 421, 689, 827
BslI	CCNNNNNNNGG	3 cut(s)	277, 278, 427
BsmAI	GTCTC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	138, 420
BsoBI	CYCGRG	2 cut(s)	387, 878
Bsp119I	TTCGAA	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	430, 685, 821
BspACI	CCGC	3 cut(s)	467, 513, 769
BspANI	GGCC	2 cut(s)	138, 420
BspCNI	CTCAG	3 cut(s)	291, 334, 513
BspDI	ATCGAT	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	4 cut(s)	432, 511, 687, 831
BspPI	GGATC	5 cut(s)	425, 438, 680, 693, 816
BspQI	GCTCTTC	1 cut(s)	543
BspT104I	TTCGAA	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	3 cut(s)	430, 685, 821
BssNI	GRCGYC	1 cut(s)	510
Bst6I	CTCTTC	2 cut(s)	489, 543
BstACI	GRCGYC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	250, 292
BstDEI	CTNAG	4 cut(s)	299, 342, 521, 728
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	2 cut(s)	513, 653
BstHHI	GCGC	2 cut(s)	512, 652
BstKTI	GATC	3 cut(s)	433, 688, 824
BstMAI	GTCTC	1 cut(s)	894
BstMBI	GATC	3 cut(s)	430, 685, 821
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 249, 300, 473, 656
BstSCI	CCNGG	2 cut(s)	420, 825
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	440, 451
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	3 cut(s)	430, 685, 821
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	3 cut(s)	430, 685, 821
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	138, 420
BsuTUI	ATCGAT	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	250, 292
CfoI	GCGC	2 cut(s)	512, 652
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	171, 874
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	372
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	299, 342, 521, 728
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	3 cut(s)	432, 687, 823
DpnII	GATC	3 cut(s)	430, 685, 821
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	489, 543
EarI	CTCTTC	2 cut(s)	489, 543
Eco47I	GGWCC	2 cut(s)	171, 874
Eco57I	CTGAAG	2 cut(s)	513, 822
Eco88I	CYCGRG	2 cut(s)	387, 878
EcoO109I	RGGNCCY	1 cut(s)	874
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
FaiI	YATR	7 cut(s)	147, 399, 441, 459, 614, 668, 670
FauNDI	CATATG	1 cut(s)	668
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	454, 465, 513
Fsp4HI	GCNGC	3 cut(s)	454, 465, 513
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	511, 651
GluI	GCNGC	3 cut(s)	454, 465, 513
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	2 cut(s)	513, 653
HaeIII	GGCC	2 cut(s)	138, 420
HapII	CCGG	4 cut(s)	102, 421, 689, 827
HhaI	GCGC	2 cut(s)	512, 652
Hin1I	GRCGYC	1 cut(s)	510
Hin6I	GCGC	2 cut(s)	510, 650
HinP1I	GCGC	2 cut(s)	510, 650
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	3 cut(s)	383, 634, 709
HpaII	CCGG	4 cut(s)	102, 421, 689, 827
HphI	GGTGA	4 cut(s)	67, 108, 335, 821
Hpy166II	GTNNAC	2 cut(s)	161, 220
Hpy188I	TCNGA	4 cut(s)	300, 351, 493, 760
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	161, 220
Hpy99I	CGWCG	3 cut(s)	221, 278, 417
HpyAV	CCTTC	9 cut(s)	36, 129, 348, 500, 585, 640, 787, 797, 865
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	93, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 249, 300, 473, 656
HpyF3I	CTNAG	4 cut(s)	299, 342, 521, 728
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	510
HspAI	GCGC	2 cut(s)	510, 650
KasI	GGCGCC	1 cut(s)	509
Kzo9I	GATC	3 cut(s)	430, 685, 821
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	829
Lsp1109I	GCAGC	2 cut(s)	440, 451
LweI	GCATC	3 cut(s)	23, 714, 852
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	432, 687, 823
MboI	GATC	3 cut(s)	430, 685, 821
MboII	GAAGA	9 cut(s)	21, 61, 190, 376, 473, 506, 560, 704, 707
MflI	RGATCY	3 cut(s)	430, 685, 821
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	138
Mly113I	GGCGCC	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	643
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	2 cut(s)	284, 858
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	4 cut(s)	102, 421, 689, 827
MspR9I	CCNGG	2 cut(s)	422, 827
Mva1269I	GAATGC	1 cut(s)	294
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	5 cut(s)	90, 249, 300, 473, 656
NarI	GGCGCC	1 cut(s)	510
NciI	CCSGG	2 cut(s)	422, 827
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	3 cut(s)	430, 685, 821
NlaIV	GGNNCC	4 cut(s)	432, 511, 687, 831
NmuCI	GTSAC	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	543
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	383, 709
PkrI	GCNGC	3 cut(s)	455, 466, 514
PleI	GAGTC	1 cut(s)	642
PluTI	GGCGCC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	642
PpuMI	RGGWCCY	1 cut(s)	874
PshBI	ATTAAT	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	874
PspN4I	GGNNCC	4 cut(s)	432, 511, 687, 831
PspPI	GGNCC	2 cut(s)	171, 874
PspPPI	RGGWCCY	1 cut(s)	874
PspXI	VCTCGAGB	1 cut(s)	878
PsuI	RGATCY	3 cut(s)	430, 685, 821
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	626
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	284, 858
SatI	GCNGC	3 cut(s)	454, 465, 513
Sau3AI	GATC	3 cut(s)	430, 685, 821
Sau96I	GGNCC	2 cut(s)	171, 874
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	422, 827
SfaNI	GCATC	3 cut(s)	23, 714, 852
SfoI	GGCGCC	1 cut(s)	511
Sfr274I	CTCGAG	1 cut(s)	878
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	2 cut(s)	171, 874
SlaI	CTCGAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	2 cut(s)	485, 878
SmoI	CTYRAG	2 cut(s)	485, 878
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	3 cut(s)	467, 513, 769
SspDI	GGCGCC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	420, 825
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	219, 333, 530, 845, 879
TasI	AATT	1 cut(s)	556
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	2 cut(s)	383, 709
Tru1I	TTAA	2 cut(s)	284, 858
Tru9I	TTAA	2 cut(s)	284, 858
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	453, 464
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	21, 550, 587, 884
TspGWI	ACGGA	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	171, 874
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.