Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Forward (+)

37645719 .. 37647183

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATCGACGAGATTACCTTCCACTTTTGCAGCACAACCATGGAGGTTGTAGCATCCACACTTCCCTCTTCATCTCTCAAACTCAAACCCAACCCCACTCCCCAAATCTTCGTCACCAAAAGCCATCTCTGCAACACCACCGGCAAACCCACCTCACCTTCTCTGCTTTACATTGGCCAAATCTATGGCGACACTAGCAAACCCAACAGGTCCTCCACTGGCTTCTTCTCCGTCAAAGCTTACGTCGACAACCCCAACTCCATCTCCAGCTTCGCCAGCAAAGTCATCGGCTCTCTTCCCGTAGTTGGATTAATAGCTCGCATTCTAAGCGATGAGGGAGGCATTGGTGGTGAGATTATTGACTTTGCTGAGTTTCGGAGAAGGGTTGGGAAGAAGTGCACCGTTACTGACTCTAGAGCTTTTTATGAGTTCCAAGAACGACGAGGCCGGGCAGGGGATCCTCTGTATGTGCTAATGTGCTGCTATGTAGCTGCGGTTGGCGCTGGTCTTCTCAAGTCTGAAGAGATTCTAGAAGGCGCCGCGAGGCTGAGGGTTTCGAATGATATTGAGTTTGAGGAGCAAAATTTCATTGCCTTGATGAATGAGGCAAAAGAGAGAAGGGCAAAGATAAAGGCTGAGACACAAGTTATTCCAATGGAGAATCGGGTTGAGAAAGCGCTTGAGGCGATTTACATATGTTGCTTCGGGAGGGATCCAGTAGAAGAGCAAGATGAGAATCTGCTAAATGTGATGCTCAAGGCTGTGTTTCCATCCGTTGAAAAGTCCGAGATACAGCGGATTATCAAAGGAAAGGCACAGAAGGTAGCTGAAGGCGGTGATGATGGCAGATTCCCGGAGCCAAGGCCCTTGTCGAAAGAGGCTGTTAAGATGCAAATGAAGGACCTCGAGTTCCTCCAACAAAATAGAGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.56

Weight (kDa)

6.27

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	542
AciI	CCGC	4 cut(s)	494, 540, 796, 834
AclWI	GGATC	4 cut(s)	452, 465, 707, 720
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	540, 849
AcyI	GRCGYC	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	305, 454
AgsI	TTSAA	1 cut(s)	779
AloI	GAACNNNNNNTCC	2 cut(s)	893, 925
AluBI	AGCT	6 cut(s)	239, 270, 317, 419, 491, 827
AluI	AGCT	6 cut(s)	239, 270, 317, 419, 491, 827
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	632, 921
Alw44I	GTGCAC	1 cut(s)	397
AlwI	GGATC	4 cut(s)	452, 465, 707, 720
Ama87I	CYCGRG	1 cut(s)	905
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	3 cut(s)	175, 445, 863
ApaLI	GTGCAC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	30, 480, 491
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AseI	ATTAAT	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	3 cut(s)	503, 539, 679
AspS9I	GGNCC	3 cut(s)	210, 864, 901
AsuC2I	CCSGG	2 cut(s)	449, 854
AsuHPI	GGTGA	4 cut(s)	106, 147, 362, 848
AsuII	TTCGAA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	2 cut(s)	210, 901
BaeGI	GKGCMC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	177
BamHI	GGATCC	2 cut(s)	457, 712
BanI	GGYRCC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	3 cut(s)	42, 467, 478
BccI	CCATC	4 cut(s)	132, 269, 778, 836
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BcnI	CCSGG	2 cut(s)	449, 854
BcoDI	GTCTC	2 cut(s)	632, 921
BfaI	CTAG	3 cut(s)	195, 414, 530
BfoI	RGCGCY	3 cut(s)	504, 540, 680
BisI	GCNGC	4 cut(s)	31, 481, 492, 540
BlsI	GCNGC	4 cut(s)	32, 482, 493, 541
Bme1390I	CCNGG	2 cut(s)	449, 854
Bme18I	GGWCC	2 cut(s)	210, 901
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	3 cut(s)	210, 864, 901
BmiI	GGNNCC	4 cut(s)	459, 538, 714, 858
BmrFI	CCNGG	2 cut(s)	449, 854
BmsI	GCATC	3 cut(s)	62, 741, 879
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	3 cut(s)	497, 701, 740
BpuMI	CCSGG	2 cut(s)	449, 854
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	39, 860
BsaXI	ACNNNNNCTCC	6 cut(s)	197, 227, 242, 248, 272, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 454
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	223, 716
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	39, 860
BseGI	GGATG	2 cut(s)	53, 770
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	305, 454
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	360, 539, 627
BseNI	ACTGG	2 cut(s)	223, 716
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	42, 467, 478
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	177, 447, 865
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	3 cut(s)	141, 448, 854
BslI	CCNNNNNNNGG	2 cut(s)	305, 454
BsmAI	GTCTC	2 cut(s)	632, 921
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	177, 447, 865
BsoBI	CYCGRG	1 cut(s)	905
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	3, 457, 712
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	494, 540, 796, 834
BspANI	GGCC	3 cut(s)	177, 447, 865
BspCNI	CTCAG	3 cut(s)	361, 540, 628
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	4 cut(s)	459, 538, 714, 858
BspPI	GGATC	4 cut(s)	452, 465, 707, 720
BspQI	GCTCTTC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	223, 716
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	39, 860
BssMI	GATC	3 cut(s)	3, 457, 712
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	2 cut(s)	39, 860
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	4 cut(s)	73, 300, 516, 717
BstACI	GRCGYC	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	277, 319
BstDEI	CTNAG	4 cut(s)	326, 369, 548, 636
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	53, 770
BstFNI	CGCG	1 cut(s)	542
BstH2I	RGCGCY	3 cut(s)	504, 540, 680
BstHHI	GCGC	3 cut(s)	503, 539, 679
BstKTI	GATC	3 cut(s)	6, 460, 715
BstMAI	GTCTC	2 cut(s)	632, 921
BstMBI	GATC	3 cut(s)	3, 457, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 195, 276, 327, 500, 683
BstSCI	CCNGG	2 cut(s)	447, 852
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	42, 467, 478
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	457, 712
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	2 cut(s)	457, 712
BsuRI	GGCC	3 cut(s)	177, 447, 865
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	53, 770
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	277, 319
CfoI	GCGC	3 cut(s)	503, 539, 679
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	210, 864, 901
CviAII	CATG	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	326, 369, 548, 636
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	3 cut(s)	5, 459, 714
DpnII	GATC	3 cut(s)	3, 457, 712
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	4 cut(s)	73, 300, 516, 717
EarI	CTCTTC	4 cut(s)	73, 300, 516, 717
Eco130I	CCWWGG	2 cut(s)	39, 860
Eco47I	GGWCC	2 cut(s)	210, 901
Eco47III	AGCGCT	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	540, 849
Eco88I	CYCGRG	1 cut(s)	905
EcoO109I	RGGNCCY	3 cut(s)	210, 864, 901
EcoT14I	CCWWGG	2 cut(s)	39, 860
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	39, 860
FaeI	CATG	1 cut(s)	43
FaiI	YATR	7 cut(s)	41, 186, 426, 468, 486, 695, 697
FatI	CATG	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	31, 481, 492, 540
FokI	GGATG	2 cut(s)	40, 757
Fsp4HI	GCNGC	4 cut(s)	31, 481, 492, 540
FspBI	CTAG	3 cut(s)	195, 414, 530
GlaI	GCGC	3 cut(s)	502, 538, 678
GluI	GCNGC	4 cut(s)	31, 481, 492, 540
GsuI	CTGGAG	1 cut(s)	250
HaeII	RGCGCY	3 cut(s)	504, 540, 680
HaeIII	GGCC	3 cut(s)	177, 447, 865
HapII	CCGG	3 cut(s)	141, 448, 854
HhaI	GCGC	3 cut(s)	503, 539, 679
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	3 cut(s)	501, 537, 677
HinP1I	GCGC	3 cut(s)	501, 537, 677
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	5 cut(s)	410, 526, 661, 736, 849
HpaII	CCGG	3 cut(s)	141, 448, 854
HphI	GGTGA	4 cut(s)	106, 147, 362, 848
Hpy166II	GTNNAC	2 cut(s)	247, 399
Hpy188I	TCNGA	3 cut(s)	378, 520, 787
Hpy188III	TCNNGA	3 cut(s)	414, 530, 706
Hpy8I	GTNNAC	2 cut(s)	247, 399
Hpy99I	CGWCG	3 cut(s)	11, 248, 444
HpyAV	CCTTC	8 cut(s)	28, 168, 375, 527, 612, 814, 824, 892
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	30, 132, 399, 892
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 195, 276, 327, 500, 683
HpyF3I	CTNAG	4 cut(s)	326, 369, 548, 636
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	3 cut(s)	501, 537, 677
KasI	GGCGCC	1 cut(s)	536
Kzo9I	GATC	3 cut(s)	3, 457, 712
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	577, 856
Lsp1109I	GCAGC	3 cut(s)	42, 467, 478
LweI	GCATC	3 cut(s)	62, 741, 879
MaeI	CTAG	3 cut(s)	195, 414, 530
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	112, 403
MalI	GATC	3 cut(s)	5, 459, 714
MboI	GATC	3 cut(s)	3, 457, 712
MboII	GAAGA	8 cut(s)	60, 100, 217, 287, 403, 500, 533, 734
MflI	RGATCY	2 cut(s)	457, 712
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	1 cut(s)	583
MluNI	TGGCCA	1 cut(s)	177
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	286
Mox20I	TGGCCA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	311, 885
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	3 cut(s)	141, 448, 854
MspR9I	CCNGG	2 cut(s)	449, 854
Mva1269I	GAATGC	1 cut(s)	321
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	6 cut(s)	129, 195, 276, 327, 500, 683
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	2 cut(s)	449, 854
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	3 cut(s)	3, 457, 712
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	4 cut(s)	459, 538, 714, 858
NmuCI	GTSAC	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	526, 661, 736, 849
PfoI	TCCNGGA	1 cut(s)	852
PkrI	GCNGC	4 cut(s)	32, 482, 493, 541
PleI	GAGTC	1 cut(s)	404
PluTI	GGCGCC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	2 cut(s)	210, 901
PshBI	ATTAAT	1 cut(s)	311
Psp5II	RGGWCCY	2 cut(s)	210, 901
PspN4I	GGNNCC	4 cut(s)	459, 538, 714, 858
PspPI	GGNCC	3 cut(s)	210, 864, 901
PspPPI	RGGWCCY	2 cut(s)	210, 901
PspXI	VCTCGAGB	1 cut(s)	905
PsuI	RGATCY	2 cut(s)	457, 712
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	311, 885
SatI	GCNGC	4 cut(s)	31, 481, 492, 540
Sau3AI	GATC	3 cut(s)	3, 457, 712
Sau96I	GGNCC	3 cut(s)	210, 864, 901
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	449, 854
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	3 cut(s)	62, 741, 879
SfoI	GGCGCC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	905
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	2 cut(s)	210, 901
SlaI	CTCGAG	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	512, 680, 755, 905
SmoI	CTYRAG	4 cut(s)	512, 680, 755, 905
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	4 cut(s)	494, 540, 796, 834
SspDI	GGCGCC	1 cut(s)	536
SspMI	CTAG	3 cut(s)	195, 414, 530
StyD4I	CCNGG	2 cut(s)	447, 852
StyI	CCWWGG	2 cut(s)	39, 860
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	6, 246, 557, 872, 906
TasI	AATT	1 cut(s)	583
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	4 cut(s)	526, 661, 736, 849
Tru1I	TTAA	2 cut(s)	311, 885
Tru9I	TTAA	2 cut(s)	311, 885
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	30, 480, 491
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	60, 577, 614, 911
TspGWI	ACGGA	2 cut(s)	220, 763
TspRI	CASTG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	210, 901
VspI	ATTAAT	1 cut(s)	311
XapI	RAATTY	1 cut(s)	583
XbaI	TCTAGA	2 cut(s)	413, 529
XhoI	CTCGAG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	195, 414, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.