AT3G55330

psbP-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009485
Physical Location & Seq
Reverse (-)
20513739 .. 20515392
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55330.1

Sequence Viewer

Length: 693 bp
ATGGCTTCTCTGAAGCTTTCACCTTCTTCTCCAATCTCCATTTCTAAGGTTGGTGTGATTCCTTCCTCTAAGAAAGGACTTTCATTTCTTGTAAAAGCAGAGCACCATTCCTCGTCTTCTTCTTCTCATCTTCAAGATAAATGTCAGAGACGTCTGATTGTAACATTTGGTGTTGTTGCTCCTTGGATCTCATTGCTTAGTAGAGCTCCATTATCATTTGCTGCAGAAAGCAAAAAAGGATTCCTTGCTGTCTCTGACAATAAAGATGCTTATGCGTTTCTCTATCCATTTGGTTGGCAGGAAGTTGTGATTGAAGGTCAAGATAAGGTATACAAAGATGTGATTGAGCCTTTAGAAAGTGTTAGTGTGAATTTGGTCCCAACTAGCAAACAGACTATTAAAGAATTTGGCCCTCCCAAGCAGATAGCTGAAACACTGATAAAGAAAGTTTTGGCACCTCCAAATCAGAAAACAACCCTTATTGATGCATCAGAGCATGATGTCGATGGGAAGACTTATTATCAGTTTGAGTTCACTGTTCAAGCTAGAAACTACACTCGCCATGCTCTGGGTACCATCACGGTTTTCAACGGAAACTTCTACACACTGACGACGGGAGCGAATGAAAGGAGGTGGGAGAAGATGAAAGATAGGCTTCACACTGTGGTAGATTCCTTCAAGATCACTGTTTGA

Protein Analysis

230

Amino Acids

25.62

Weight (kDa)

9.37

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 79 - 228 1.6e-54 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 2 cut(s) 454, 572
AccB7I CCANNNNNTGG 1 cut(s) 568
AccI GTMKAC 1 cut(s) 330
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 370, 404
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 664
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 5 cut(s) 134, 314, 542, 589, 679
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 4 cut(s) 16, 206, 428, 545
AluI AGCT 4 cut(s) 16, 206, 428, 545
Alw21I GWGCWC 2 cut(s) 105, 208
Alw26I GTCTC 2 cut(s) 142, 256
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 370, 404
Asp718I GGTACC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 376, 410
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 376
BanI GGYRCC 2 cut(s) 454, 572
BanII GRGCYC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 108, 518
Bbv12I GWGCWC 2 cut(s) 105, 208
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 500, 584
BcoDI GTCTC 2 cut(s) 142, 256
BfaI CTAG 2 cut(s) 384, 546
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 376, 410
BmiI GGNNCC 3 cut(s) 378, 456, 574
BmsI GCATC 3 cut(s) 256, 475, 497
BpiI GAAGAC 2 cut(s) 108, 518
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMI GCAATG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 2 cut(s) 454, 572
BsiHKAI GWGCWC 2 cut(s) 105, 208
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 2 cut(s) 142, 256
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 105, 208
Bsp143I GATC 2 cut(s) 186, 681
BspANI GGCC 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 378, 456, 574
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 2 cut(s) 454, 572
BsrDI GCAATG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 186, 681
BssNAI GTATAC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 182
Bst1107I GTATAC 1 cut(s) 331
Bst4CI ACNGT 4 cut(s) 538, 583, 664, 688
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 45, 69, 197
BstKTI GATC 2 cut(s) 189, 684
BstMAI GTCTC 2 cut(s) 142, 256
BstMBI GATC 2 cut(s) 186, 681
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 2 cut(s) 108, 518
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 294
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 411
BtsIMutI CAGTG 5 cut(s) 434, 534, 605, 660, 684
Cfr13I GGNCC 2 cut(s) 376, 410
Csp6I GTAC 1 cut(s) 573
CviAII CATG 2 cut(s) 497, 563
CviJI RGCY 8 cut(s) 5, 16, 206, 349, 411, 428, 545, 655
CviKI_1 RGCY 8 cut(s) 5, 16, 206, 349, 411, 428, 545, 655
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 3 cut(s) 45, 69, 197
DpnI GATC 2 cut(s) 188, 683
DpnII GATC 2 cut(s) 186, 681
DraIII CACNNNGTG 1 cut(s) 664
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 2 cut(s) 500, 566
FaiI YATR 4 cut(s) 273, 331, 498, 564
FalI AAGNNNNNCTT 4 cut(s) 228, 260, 639, 671
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 496, 562
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 384, 546
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 2 cut(s) 500, 566
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 58, 240, 671
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 331, 534
Hpy188I TCNGA 6 cut(s) 12, 147, 156, 256, 468, 493
Hpy188III TCNNGA 3 cut(s) 134, 320, 679
Hpy8I GTNNAC 2 cut(s) 331, 534
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 33, 72, 308, 685
HpyCH4III ACNGT 4 cut(s) 538, 583, 664, 688
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 224, 488
HpyF3I CTNAG 3 cut(s) 45, 69, 197
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 500, 566
KpnI GGTACC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 186, 681
LmnI GCTCC 3 cut(s) 184, 211, 617
LpnPI CCDG 2 cut(s) 284, 554
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 256, 475, 497
MaeI CTAG 2 cut(s) 384, 546
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 188, 683
MboI GATC 2 cut(s) 186, 681
MboII GAAGA 7 cut(s) 18, 108, 111, 114, 122, 523, 652
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 105, 208
MluCI AATT 2 cut(s) 370, 404
MnlI CCTC 5 cut(s) 76, 121, 423, 468, 624
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 1 cut(s) 399
NdeII GATC 2 cut(s) 186, 681
NlaIII CATG 2 cut(s) 500, 566
NlaIV GGNNCC 3 cut(s) 378, 456, 574
NsiI ATGCAT 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 617
PfeI GAWTC 3 cut(s) 58, 240, 671
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 378, 456, 574
PspPI GGNCC 2 cut(s) 376, 410
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
SacI GAGCTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 186, 681
Sau96I GGNCC 2 cut(s) 376, 410
SduI GDGCHC 2 cut(s) 105, 208
SfaNI GCATC 3 cut(s) 256, 475, 497
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 376
Sse9I AATT 2 cut(s) 370, 404
SspMI CTAG 2 cut(s) 384, 546
SstI GAGCTC 1 cut(s) 208
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 4 cut(s) 538, 583, 664, 688
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 504
TasI AATT 2 cut(s) 370, 404
TfiI GAWTC 3 cut(s) 58, 240, 671
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 5 cut(s) 441, 541, 612, 667, 691
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 72, 639, 659
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 5 cut(s) 441, 541, 612, 667, 691
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 2 cut(s) 370, 404
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 2 cut(s) 384, 546
ZraI GACGTC 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.