Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009485

Physical Location & Seq

Genomic Coordinates Reverse (-)

17121043 .. 17123455

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21370.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGACCCTGCAGAACTCACCTTCACCCCACAGGACCCTGGTGCTCAACTCCTTTACTAAGGTACAAAACAAGCAAAGCAATTCACATTGCTACAGAAGAAGCGTGTCGTTTTTGGTAAGAGCAGAGCAAGCTTCATCATCTTCAGCATGCTCTCCTTCTCAAGATAGATCTGGGAGACGCCAAGTACTAGCTGCAGGGACAATTGCTTCTATGGCTTATCTCACTAACCAACATTCTGCATCATTTGCTGCAGAAAAGAAGAAGGATTTCCAGCTTGTTACGGACAAGAAAGACGGATATGAATTTGTCTACCCTTTTGGTTGGCAAGAAGTTTCCATTGAAGGGCAAGACAAGGTATTCAAGGATGTGATTGAGCCGCTAGAGACTGCAAGTGTGACTCTCTTCCCAACTGTCAAGGAGGACATCAAGGAATTTGGGACTCCACAAGAGGTTGCTGAGACTCTGATCAAGAAGGTTCTTGCTCCTCCCACCCAGAAAACAAAACTGATTGAGGCAACAGAGCATGAGATTGATGGGAAAACATATTACACTTTCGAGTTTATGGCCAAGGCTCCGAACTATACTCGCCACGCTCTAAGCACAATAGCTGTTAACAATGGTAAATTCTACACACTGACGACAGGAGCCAACGAAAGGAGGTGGGGGAAGATGAAAGATAAACTACACACCATTGTTGATTCCTTCAAACTTTTCAAAGTCTATGAAGGCAATTTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

248

Amino Acids

27.8

Weight (kDa)

9.14

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	89 - 175	2.5e-26	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55330
fragaria_vesca	FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370
malus_domestica	MD01G1121300.v1.1
prunus_persica	Prupe.2G229000_v2.0.a1 Prupe.2G229000_v2.0.a1
pyrus_communis	pycom01g14830 pycom07g18030
rosa_chinensis	RchiOBHm_Chr1g0365751
rosa_laevigata	RLG00000027403
rosa_multiflora	Rmu_sc0002093.1_g000032 Rmu_sc0004311.1_g000019
rosa_roxburghii	Rroxscaffold_4G00290930
rosa_rugosa	Rorug01G0323800
rosa_samantha	Rh1AG332600 Rh1BG293500 Rh1CG310300 Rh1DG325800
rosa_wichuraiana	Rw1G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	3 cut(s)	305, 434, 626
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	66, 189
AfiI	CCNNNNNNNGG	2 cut(s)	345, 657
AgsI	TTSAA	4 cut(s)	344, 364, 709, 718
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	134, 194, 277, 611
AluI	AGCT	4 cut(s)	134, 194, 277, 611
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	172, 380, 455
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	194, 251
ApoI	RAATTY	3 cut(s)	305, 434, 626
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	12, 18
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	181, 238
BccI	CCATC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	172, 380, 455
BfaI	CTAG	2 cut(s)	191, 383
BfmI	CTRYAG	4 cut(s)	11, 94, 195, 252
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	3 cut(s)	195, 252, 380
BlsI	GCNGC	3 cut(s)	196, 253, 381
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	3 cut(s)	38, 576, 649
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	39, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 657
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	39, 570
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	345, 657
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	181, 238
BshFI	GGCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	214, 454
BslI	CCNNNNNNNGG	2 cut(s)	345, 657
BsmAI	GTCTC	3 cut(s)	172, 380, 455
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	214, 454
BsnI	GGCC	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	170, 468
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	38, 576, 649
BspMAI	CTGCAG	3 cut(s)	15, 199, 256
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	39, 570
BssMI	GATC	2 cut(s)	170, 468
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	132, 151
BstDEI	CTNAG	3 cut(s)	60, 459, 599
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	173, 471
BstMAI	GTCTC	3 cut(s)	172, 380, 455
BstMBI	GATC	2 cut(s)	170, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 215, 248
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	4 cut(s)	11, 94, 195, 252
BstV1I	GCAGC	2 cut(s)	181, 238
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	132, 151
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	65, 188
CviAII	CATG	2 cut(s)	150, 527
CviJI	RGCY	9 cut(s)	134, 194, 218, 277, 379, 569, 575, 611, 650
CviKI_1	RGCY	9 cut(s)	134, 194, 218, 277, 379, 569, 575, 611, 650
CviQI	GTAC	2 cut(s)	65, 188
DdeI	CTNAG	3 cut(s)	60, 459, 599
DpnI	GATC	2 cut(s)	172, 470
DpnII	GATC	2 cut(s)	170, 468
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	153, 530
FaiI	YATR	8 cut(s)	151, 215, 303, 528, 547, 566, 585, 726
FaqI	GGGAC	2 cut(s)	214, 454
FatI	CATG	2 cut(s)	149, 526
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	195, 252, 380
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	195, 252, 380
FspBI	CTAG	2 cut(s)	191, 383
GluI	GCNGC	3 cut(s)	195, 252, 380
HaeIII	GGCC	1 cut(s)	569
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	153, 530
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	4 cut(s)	400, 442, 463, 701
HpaI	GTTAAC	1 cut(s)	616
HphI	GGTGA	2 cut(s)	12, 18
Hpy166II	GTNNAC	2 cut(s)	313, 616
Hpy188I	TCNGA	2 cut(s)	468, 579
Hpy188III	TCNNGA	2 cut(s)	164, 472
Hpy8I	GTNNAC	2 cut(s)	313, 616
HpyAV	CCTTC	7 cut(s)	33, 168, 259, 338, 469, 715, 722
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	13, 197, 242, 254, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 215, 248
HpyF3I	CTNAG	3 cut(s)	60, 459, 599
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	153, 530
Ksp22I	TGATCA	1 cut(s)	468
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	170, 468
LmnI	GCTCC	3 cut(s)	490, 580, 647
LpnPI	CCDG	9 cut(s)	19, 23, 26, 53, 159, 183, 287, 509, 630
Lsp1109I	GCAGC	2 cut(s)	181, 238
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	191, 383
MaeIII	GTNAC	2 cut(s)	280, 397
MalI	GATC	2 cut(s)	172, 470
MboI	GATC	2 cut(s)	170, 468
MboII	GAAGA	5 cut(s)	111, 135, 274, 397, 682
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	6 cut(s)	82, 204, 305, 434, 626, 733
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	3 cut(s)	394, 436, 457
MnlI	CCTC	5 cut(s)	415, 445, 498, 508, 654
Mox20I	TGGCCA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	131, 215, 248
NdeII	GATC	2 cut(s)	170, 468
NlaIII	CATG	2 cut(s)	153, 530
NlaIV	GGNNCC	3 cut(s)	38, 576, 649
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	701
PkrI	GCNGC	3 cut(s)	196, 253, 381
PleI	GAGTC	3 cut(s)	394, 436, 457
PpsI	GAGTC	3 cut(s)	394, 436, 457
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	38, 576, 649
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	15, 199, 256
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	2 cut(s)	66, 189
RsaNI	GTAC	2 cut(s)	65, 188
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	3 cut(s)	195, 252, 380
Sau3AI	GATC	2 cut(s)	170, 468
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	3 cut(s)	394, 436, 457
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	4 cut(s)	11, 94, 195, 252
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	6 cut(s)	82, 204, 305, 434, 626, 733
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	191, 383
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	558
TasI	AATT	6 cut(s)	82, 204, 305, 434, 626, 733
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	194, 251
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	4 cut(s)	126, 318, 689, 741
TspGWI	ACGGA	2 cut(s)	299, 312
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	3 cut(s)	305, 434, 626
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	2 cut(s)	191, 383
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.