Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Reverse (-)

44276638 .. 44279059

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCACCTCCAAATTCAGCACTCATATCCGACCTTGTATCTGGTGCAACCCATGTTCCTTCTCAATTCGTCCGACCCGAACATGATCGTCCCAATCTTGACCAGGTCATTCAGTCCTCTGATATGTCCATTCCTCTCATCGACCTCCAAGATTTCGACGGCTCACGGCGCTCAGAAATCATTAAGCAGATCGGCCTTGCCTGCCAAGACTATGGCTTTTTTCAGGTTAAAAACCATGGAATTAACGAGGCAGTGATCGATAACTTGTTGGCTGTGGCAAAGGAGTTTTTCCATTTGCCAGAGAGTGAAAGGATGAAGGTTTACTCTGAAGACCCTTATAAGACCATAAGACTGTCAACTAGCTTCAATGTCAGAGTTGAGGAAGTATCCTGCTGGAGAGATTACCTAAGACTCCACTGCCATCCTCTAGAGGATTACATTCATGAGTGGCCAGCCAACCCTCCCTCTTTCAGGGAAGATGTGGCAGAGTATTGCAAGAAAGTCAGAGGCCTTGCAGTGAGACTCCTTCAAGGCATATCTGAAAGCCTGGGACTGGAACGAGACTACATCAACAAGGCCCTAGCAAAGCATGGGCAGCACATGGCGATCAATTACTATCCACCATGCCCTCAGCCAGAGCTGACCTACGGCTTACCCGGGCATGCTGACCCGAACGTCGTCACCCTCCTCCTCCAGGACGACGTGGGAGGCTTGCAGGTTCTCAAGGGCGGGAAATGGGTTGCTGTCAAGCCCATTCCTCACACCTTCATCGTCAACCTCGGCGACCAAATGCAGGTTTTGAGCAATGATCGCTATAAGAGTATACTCCACCGCGCGGTGGTGAATAGCGACAAGGAAAGGATCTCCATCCCAACATTCTACTGCCCATCATACGATGCTGTGATCAAACCTGCCCCGAAACTGGTTGATGATGATCATCCGGCCCTCTACCGGAGCTTCACTTACGGTGAATTCTACGGGAATTTCTGGGACAAGGGCATTGATAAAAAATCTGGAACCAGTTTGGGCATGTTTAAAACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

348

Amino Acids

39.4

Weight (kDa)

6.0

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	44 - 152	1.1e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 296	3.4e-38	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AasI	GACNNNNNNGTC	1 cut(s)	674
Acc36I	ACCTGC	3 cut(s)	706, 784, 919
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	2 cut(s)	834, 836
AciI	CCGC	3 cut(s)	729, 832, 836
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	3 cut(s)	13, 971, 982
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	8 cut(s)	471, 553, 694, 793, 835, 838, 922, 951
AgsI	TTSAA	2 cut(s)	367, 530
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	3 cut(s)	102, 546, 693
AluBI	AGCT	3 cut(s)	363, 640, 957
AluI	AGCT	3 cut(s)	363, 640, 957
Alw26I	GTCTC	2 cut(s)	514, 555
AlwI	GGATC	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	5 cut(s)	193, 449, 508, 576, 942
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	3 cut(s)	13, 971, 982
AspLEI	GCGC	2 cut(s)	171, 836
AspS9I	GGNCC	2 cut(s)	577, 943
AsuC2I	CCSGG	2 cut(s)	657, 658
AsuHPI	GGTGA	3 cut(s)	673, 853, 980
AvaI	CYCGRG	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	3 cut(s)	429, 875, 895
BceAI	ACGGC	3 cut(s)	175, 182, 664
BciT130I	CCWGG	3 cut(s)	104, 548, 695
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	903, 934
BcnI	CCSGG	2 cut(s)	657, 658
BcoDI	GTCTC	2 cut(s)	514, 555
BfaI	CTAG	4 cut(s)	360, 428, 581, 1045
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	3 cut(s)	706, 784, 919
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	5 cut(s)	104, 548, 657, 658, 695
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	577, 943
BmiI	GGNNCC	2 cut(s)	6, 1018
BmrFI	CCNGG	5 cut(s)	104, 548, 657, 658, 695
BmsI	GCATC	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	2 cut(s)	415, 677
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	657, 658
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	3 cut(s)	866, 933, 936
BsaJI	CCNNGG	4 cut(s)	235, 547, 656, 778
BsaWI	WCCGGW	1 cut(s)	951
Bsc4I	CCNNNNNNNGG	8 cut(s)	471, 553, 694, 793, 835, 838, 922, 951
Bse1I	ACTGG	3 cut(s)	558, 927, 1020
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	3 cut(s)	866, 933, 936
BseBI	CCWGG	3 cut(s)	104, 548, 695
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	235, 547, 656, 778
BseGI	GGATG	4 cut(s)	318, 421, 867, 937
BseJI	GATNNNNATC	3 cut(s)	866, 933, 936
BseLI	CCNNNNNNNGG	8 cut(s)	471, 553, 694, 793, 835, 838, 922, 951
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	2 cut(s)	186, 644
BseNI	ACTGG	3 cut(s)	558, 927, 1020
BseRI	GAGGAG	2 cut(s)	677, 680
BseXI	GCAGC	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	834, 836
BshFI	GGCC	5 cut(s)	195, 451, 510, 578, 944
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	657, 941, 952
BslFI	GGGAC	3 cut(s)	75, 564, 1004
BslI	CCNNNNNNNGG	8 cut(s)	471, 553, 694, 793, 835, 838, 922, 951
BsmAI	GTCTC	2 cut(s)	514, 555
BsmFI	GGGAC	3 cut(s)	75, 564, 1004
BsnI	GGCC	5 cut(s)	195, 451, 510, 578, 944
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	3 cut(s)	729, 832, 836
BspANI	GGCC	5 cut(s)	195, 451, 510, 578, 944
BspCNI	CTCAG	2 cut(s)	185, 643
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	834, 836
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	6, 1018
BspMI	ACCTGC	3 cut(s)	706, 784, 919
BspPI	GGATC	1 cut(s)	869
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	3 cut(s)	558, 927, 1020
BssECI	CCNNGG	4 cut(s)	235, 547, 656, 778
BssMI	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
BssNAI	GTATAC	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	235
Bst1107I	GTATAC	1 cut(s)	824
Bst2UI	CCWGG	3 cut(s)	104, 548, 695
Bst4CI	ACNGT	2 cut(s)	354, 968
BstC8I	GCNNGC	4 cut(s)	202, 453, 663, 713
BstDEI	CTNAG	3 cut(s)	172, 407, 630
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	2 cut(s)	469, 692
BstF5I	GGATG	4 cut(s)	318, 421, 867, 937
BstFNI	CGCG	2 cut(s)	834, 836
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 836
BstKTI	GATC	8 cut(s)	88, 192, 258, 609, 811, 864, 906, 937
BstMAI	GTCTC	2 cut(s)	514, 555
BstMBI	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 201, 595, 810
BstNI	CCWGG	3 cut(s)	104, 548, 695
BstNSI	RCATGY	2 cut(s)	665, 1033
BstSCI	CCNGG	5 cut(s)	102, 546, 655, 656, 693
BstUI	CGCG	2 cut(s)	834, 836
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	861
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	861
BstZ17I	GTATAC	1 cut(s)	824
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	195, 451, 510, 578, 944
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	4 cut(s)	318, 421, 867, 937
BtsI	GCAGTG	3 cut(s)	258, 415, 522
BtsIMutI	CAGTG	3 cut(s)	258, 415, 522
BveI	ACCTGC	3 cut(s)	706, 784, 919
Cac8I	GCNNGC	4 cut(s)	202, 453, 663, 713
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	171, 836
Cfr13I	GGNCC	2 cut(s)	577, 943
Cfr9I	CCCGGG	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	258
CsiI	ACCWGGT	1 cut(s)	102
CviAII	CATG	9 cut(s)	53, 83, 236, 443, 590, 601, 624, 662, 1030
DdeI	CTNAG	3 cut(s)	172, 407, 630
DpnI	GATC	8 cut(s)	87, 191, 257, 608, 810, 863, 905, 936
DpnII	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
DraI	TTTAAA	1 cut(s)	1036
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	656
EcoNI	CCTNNNNNAGG	2 cut(s)	469, 692
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	3 cut(s)	102, 546, 693
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1033
FaqI	GGGAC	3 cut(s)	75, 564, 1004
FatI	CATG	9 cut(s)	52, 82, 235, 442, 589, 600, 623, 661, 1029
FauI	CCCGC	1 cut(s)	722
FbaI	TGATCA	2 cut(s)	903, 934
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	4 cut(s)	325, 408, 854, 924
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	4 cut(s)	360, 428, 581, 1045
GlaI	GCGC	2 cut(s)	170, 835
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	415, 677
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	195, 451, 510, 578, 944
HapII	CCGG	3 cut(s)	657, 941, 952
HhaI	GCGC	2 cut(s)	171, 836
Hin1II	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1033
Hin6I	GCGC	2 cut(s)	169, 834
HinP1I	GCGC	2 cut(s)	169, 834
HincII	GTYRAC	2 cut(s)	357, 775
HindII	GTYRAC	2 cut(s)	357, 775
HinfI	GANTC	2 cut(s)	411, 522
HpaII	CCGG	3 cut(s)	657, 941, 952
HphI	GGTGA	3 cut(s)	673, 853, 980
Hpy166II	GTNNAC	4 cut(s)	322, 357, 775, 824
Hpy188I	TCNGA	8 cut(s)	31, 74, 121, 175, 328, 374, 506, 541
Hpy188III	TCNNGA	4 cut(s)	98, 428, 443, 1014
Hpy8I	GTNNAC	4 cut(s)	322, 357, 775, 824
Hpy99I	CGWCG	3 cut(s)	161, 680, 704
HpyAV	CCTTC	4 cut(s)	69, 310, 536, 775
HpyCH4III	ACNGT	2 cut(s)	354, 968
HpyCH4IV	ACGT	2 cut(s)	675, 702
HpyCH4V	TGCA	5 cut(s)	47, 495, 515, 715, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 201, 595, 810
HpyF3I	CTNAG	3 cut(s)	172, 407, 630
HpySE526I	ACGT	2 cut(s)	675, 702
Hsp92II	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1033
HspAI	GCGC	2 cut(s)	169, 834
Ksp22I	TGATCA	2 cut(s)	903, 934
Kzo9I	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
LmnI	GCTCC	1 cut(s)	954
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	886
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	4 cut(s)	360, 428, 581, 1045
MaeII	ACGT	2 cut(s)	675, 702
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	8 cut(s)	87, 191, 257, 608, 810, 863, 905, 936
MboI	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
MboII	GAAGA	2 cut(s)	341, 488
MflI	RGATCY	1 cut(s)	861
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	6 cut(s)	13, 65, 240, 610, 971, 982
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	405, 516
MmeI	TCCRAC	2 cut(s)	54, 97
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	4 cut(s)	183, 228, 243, 1035
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	3 cut(s)	657, 941, 952
MspR9I	CCNGG	5 cut(s)	104, 548, 657, 658, 695
MvaI	CCWGG	3 cut(s)	104, 548, 695
MvnI	CGCG	2 cut(s)	834, 836
MwoI	GCNNNNNNNGC	4 cut(s)	168, 201, 595, 810
NciI	CCSGG	2 cut(s)	657, 658
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
NlaIII	CATG	9 cut(s)	56, 86, 239, 446, 593, 604, 627, 665, 1033
NlaIV	GGNNCC	2 cut(s)	6, 1018
NmeAIII	GCCGAG	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	679
NspI	RCATGY	2 cut(s)	665, 1033
PaeI	GCATGC	1 cut(s)	665
PagI	TCATGA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	405, 516
PpsI	GAGTC	2 cut(s)	405, 516
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	102, 546, 693
PspGI	CCWGG	3 cut(s)	102, 546, 693
PspN4I	GGNNCC	2 cut(s)	6, 1018
PspPI	GGNCC	2 cut(s)	577, 943
PsuI	RGATCY	1 cut(s)	861
PsyI	GACNNNGTC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	183, 228, 243, 1035
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	8 cut(s)	85, 189, 255, 606, 808, 861, 903, 934
Sau96I	GGNCC	2 cut(s)	577, 943
SchI	GAGTC	2 cut(s)	405, 516
ScrFI	CCNGG	5 cut(s)	104, 548, 657, 658, 695
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	886
SmaI	CCCGGG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	6 cut(s)	13, 65, 240, 610, 971, 982
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	3 cut(s)	729, 832, 836
SspMI	CTAG	4 cut(s)	360, 428, 581, 1045
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	5 cut(s)	102, 546, 655, 656, 693
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	354, 968
TaiI	ACGT	2 cut(s)	678, 705
TaqI	TCGA	3 cut(s)	141, 156, 258
TasI	AATT	6 cut(s)	13, 65, 240, 610, 971, 982
Tru1I	TTAA	4 cut(s)	183, 228, 243, 1035
Tru9I	TTAA	4 cut(s)	183, 228, 243, 1035
TscAI	CASTG	3 cut(s)	258, 422, 522
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	3 cut(s)	329, 431, 757
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	3 cut(s)	258, 422, 522
Tth111I	GACNNNGTC	1 cut(s)	104
XagI	CCTNNNNNAGG	2 cut(s)	469, 692
XapI	RAATTY	3 cut(s)	13, 971, 982
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	2 cut(s)	665, 1033
XmaI	CCCGGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	4 cut(s)	360, 428, 581, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.