Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

68516949 .. 68519320

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCCAGCTAAAGGTGATGTTTCCAAAAAGGGTGACCCAAAGTCACAAGCCTTGAAGGCTGCCAAAGCATTGAAGTCCGGACCTACTGTTAAGAGAACAGGGAAGAAGATCCGAACATCAGTTACGTTTCATCGGCCTAAGACATTGAAAAAGGAGAGGAACCCTAAGTACCCTCGTATTAGTGCTCCACCAAGGAACAAGCTTGATCATTATCAAATTTTGAAGTATCCTCTTACGACTGAATCTGCAATGAAAAAGATTGAAGATAACAACACGTTGGTATTTATTGTTGACATACGTGCTGACAAAAAGAAAATAAAGGATGCAGTCAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGGCCTGATGGTACTAAAAAGGCTTATGTTAGGTTGACCCCAGATTTTGATGCACTGGATGTGGCAAACAAAATTGGTATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

10.25

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 64	3.7e-20	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 133	1.4e-13	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	80
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	2 cut(s)	173, 391
AfiI	CCNNNNNNNGG	2 cut(s)	14, 378
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	58, 76, 151, 226, 266
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	2 cut(s)	11, 205
AluI	AGCT	2 cut(s)	11, 205
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	2 cut(s)	137, 380
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	29, 47
AvaII	GGWCC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	2 cut(s)	208, 375
BfuI	GTATCC	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	6, 164
BmsI	GCATC	2 cut(s)	316, 418
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 378
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	331, 442
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	14, 378
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	139, 382
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	14, 378
BsnI	GGCC	2 cut(s)	139, 382
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	111, 208, 375
BspANI	GGCC	2 cut(s)	139, 382
BspEI	TCCGGA	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	6, 164
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	111, 208, 375
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	141, 168
BstEII	GGTNACC	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	331, 442
BstKTI	GATC	3 cut(s)	114, 211, 378
BstMBI	GATC	3 cut(s)	111, 208, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstPI	GGTNACC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	139, 382
BtsCI	GGATG	2 cut(s)	331, 442
BtsIMutI	CAGTG	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	172, 390
CviJI	RGCY	8 cut(s)	5, 11, 53, 62, 139, 205, 382, 401
CviKI_1	RGCY	8 cut(s)	5, 11, 53, 62, 139, 205, 382, 401
CviQI	GTAC	2 cut(s)	172, 390
DdeI	CTNAG	2 cut(s)	141, 168
DpnI	GATC	3 cut(s)	113, 210, 377
DpnII	GATC	3 cut(s)	111, 208, 375
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaiI	YATR	3 cut(s)	299, 345, 405
FbaI	TGATCA	2 cut(s)	208, 375
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	338, 449
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	139, 382
HapII	CCGG	1 cut(s)	81
HincII	GTYRAC	2 cut(s)	295, 414
HindII	GTYRAC	2 cut(s)	295, 414
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	29, 47
Hpy166II	GTNNAC	2 cut(s)	295, 414
Hpy188I	TCNGA	2 cut(s)	116, 354
Hpy188III	TCNNGA	2 cut(s)	81, 334
Hpy8I	GTNNAC	2 cut(s)	295, 414
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	3 cut(s)	128, 278, 301
HpyCH4V	TGCA	3 cut(s)	251, 329, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	2 cut(s)	141, 168
HpySE526I	ACGT	3 cut(s)	128, 278, 301
Kpn2I	TCCGGA	1 cut(s)	80
Ksp22I	TGATCA	2 cut(s)	208, 375
Kzo9I	GATC	3 cut(s)	111, 208, 375
LmnI	GCTCC	2 cut(s)	10, 193
LpnPI	CCDG	7 cut(s)	21, 87, 94, 364, 396, 419, 432
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	316, 418
MaeII	ACGT	3 cut(s)	128, 278, 301
MaeIII	GTNAC	3 cut(s)	35, 45, 124
MalI	GATC	3 cut(s)	113, 210, 377
MboI	GATC	3 cut(s)	111, 208, 375
MboII	GAAGA	3 cut(s)	118, 121, 278
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	219, 450
MnlI	CCTC	3 cut(s)	153, 186, 243
MroI	TCCGGA	1 cut(s)	80
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	3 cut(s)	111, 208, 375
NlaIV	GGNNCC	2 cut(s)	6, 164
NmuCI	GTSAC	2 cut(s)	35, 45
PceI	AGGCCT	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	6, 164
PspPI	GGNCC	1 cut(s)	83
PsrI	GAACNNNNNNTAC	4 cut(s)	109, 141, 155, 187
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	173, 391
RsaNI	GTAC	2 cut(s)	172, 390
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	111, 208, 375
Sau96I	GGNCC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	9 cut(s)	13, 19, 88, 131, 207, 281, 304, 374, 413
SfaNI	GCATC	2 cut(s)	316, 418
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	219, 450
SseBI	AGGCCT	1 cut(s)	382
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	3 cut(s)	131, 281, 304
TasI	AATT	2 cut(s)	219, 450
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	2 cut(s)	35, 45
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	35, 45
TspDTI	ATGAA	2 cut(s)	122, 269
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.