Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Reverse (-)

5758271 .. 5761149

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCCAACTAAAGCTGATGTTTCAAAAAAAGCTGATCCAAAGTCACAAGCCGTGAAAGCTGCAAAGGCTTTGAAATCGGGCCCCATCCTTAAGAAGAAGGCCAAGAAGATCCGAACTTCAGTTACATTTCATCGGCCCAGGACATTGAAAAAGGAGAGGAACCCTAAGTATCCTCGTATCAGTGCTCCACCAAGGAACAAGCTCGATCATTATCAAATTTTGAAGTATCCTCTTACTACTGAATCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTGTTTATTGTTGACATACGTGCTGACAAGAAGAAAATTAAGGATGCAGTCAAGAAGATGTATGACATTCAGTCCAAGAAAGTGAATACCTTGATCAGGCCTGATGGTACCAAAAAGGCTTATGTTAGGCTGACCCCGGATTATGATGCTTTGGATGTGGCAAACAAAATTGGTATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

155

Amino Acids

17.47

Weight (kDa)

10.24

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AclWI	GGATC	2 cut(s)	32, 106
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	5 cut(s)	27, 76, 151, 226, 266
AhdI	GACNNNNNGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	140
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	17, 35, 62, 205
AluI	AGCT	4 cut(s)	17, 35, 62, 205
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	32, 106
AoxI	GGCC	4 cut(s)	82, 102, 137, 380
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	82, 83, 138
AsuC2I	CCSGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	95, 380
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	2 cut(s)	183, 240
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	419
BfrI	CTTAAG	1 cut(s)	92
BfuI	GTATCC	2 cut(s)	183, 240
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	142, 419
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	82, 83, 138
BmiI	GGNNCC	5 cut(s)	6, 84, 85, 164, 391
BmrFI	CCNGG	2 cut(s)	142, 419
BmsI	GCATC	2 cut(s)	316, 418
BpiI	GAAGAC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	140, 194, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	140, 194, 417
BseGI	GGATG	3 cut(s)	87, 331, 442
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	4 cut(s)	84, 104, 139, 382
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	378
BsnI	GGCC	4 cut(s)	84, 104, 139, 382
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	86, 190
Bsp143I	GATC	4 cut(s)	37, 111, 208, 375
BspANI	GGCC	4 cut(s)	84, 104, 139, 382
BspLI	GGNNCC	5 cut(s)	6, 84, 85, 164, 391
BspPI	GGATC	2 cut(s)	32, 106
BspT107I	GGYRCC	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	140, 194, 417
BssMI	GATC	4 cut(s)	37, 111, 208, 375
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	87, 331, 442
BstKTI	GATC	4 cut(s)	40, 114, 211, 378
BstMBI	GATC	4 cut(s)	37, 111, 208, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	140, 417
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	2 cut(s)	183, 240
BsuRI	GGCC	4 cut(s)	84, 104, 139, 382
BtsCI	GGATG	3 cut(s)	87, 331, 442
BtsIMutI	CAGTG	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	82, 83, 138
Csp6I	GTAC	1 cut(s)	390
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	39, 113, 210, 377
DpnII	GATC	4 cut(s)	37, 111, 208, 375
DriI	GACNNNNNGTC	1 cut(s)	352
Eam1105I	GACNNNNNGTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	194
FaiI	YATR	4 cut(s)	299, 345, 405, 426
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	3 cut(s)	74, 338, 449
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	84, 104, 139, 382
HapII	CCGG	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	65, 251, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	37, 111, 208, 375
LmnI	GCTCC	2 cut(s)	10, 193
LpnPI	CCDG	5 cut(s)	127, 154, 364, 396, 432
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	316, 418
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	45, 124
MalI	GATC	4 cut(s)	39, 113, 210, 377
MboI	GATC	4 cut(s)	37, 111, 208, 375
MboII	GAAGA	7 cut(s)	109, 121, 268, 271, 278, 325, 349
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	86, 190
MluCI	AATT	3 cut(s)	219, 318, 450
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	153, 186, 243
MseI	TTAA	2 cut(s)	93, 321
MslI	CAYNNNNRTG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	142, 419
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	4 cut(s)	37, 111, 208, 375
NlaIV	GGNNCC	5 cut(s)	6, 84, 85, 164, 391
NmuCI	GTSAC	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	5 cut(s)	6, 84, 85, 164, 391
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	82, 83, 138
PsrI	GAACNNNNNNTAC	2 cut(s)	109, 141
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	93, 321
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	37, 111, 208, 375
Sau96I	GGNCC	3 cut(s)	82, 83, 138
ScrFI	CCNGG	2 cut(s)	142, 419
SduI	GDGCHC	2 cut(s)	86, 190
SetI	ASST	6 cut(s)	19, 37, 64, 207, 304, 374
SfaNI	GCATC	2 cut(s)	316, 418
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	219, 318, 450
SseBI	AGGCCT	1 cut(s)	382
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	140, 417
StyI	CCWWGG	1 cut(s)	194
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	219, 318, 450
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	93, 321
Tru9I	TTAA	2 cut(s)	93, 321
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	122, 269
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.