Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

20555327 .. 20556020

Gene Structure 694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTTTCTGCATGCAGTTGATGGCAAGAAGAGTGATCCCAAGGCCAAGGCCTTGAAGACTGCCAAGGCTGTGAAATCAGGCCCTGCTTTCAAGAAGAAGGCCAAGAAGATCAGGACATCGGTCACATTCCACAGGCCAAGGACATTGAAGCAGGAAAGGAACCCCAAGTATCCCCGCATCAGTGCAACACCAAGAAACAAGTTGGACCACTATCAAATTCTCAAGTATCCATTGACCACTGAGTCTGCAATGAAAAAGATTGAGGACAACAACACACTCGTCTTCATTGTTGACATCCGAGCTGATAAGAAGAAGATCAATCTCGTGGATGCAGTGAAGAAGATGTACGACATTCAGACCAAGAAAGTGAACACCTTGATCAGGCCTGATGGAACGAAGAAGGCTTACGTCAGGTTGACACCGGACTACGATGCCTTGGATGTTGCTAACAAGATCGGAATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

10.2

Isoelectric Point (pI)

24.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	55, 91, 148
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	6 cut(s)	42, 48, 79, 99, 134, 383
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	80, 205
AvaII	GGWCC	1 cut(s)	205
BarI	GAAGNNNNNNTAC	4 cut(s)	329, 361, 389, 421
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	2 cut(s)	62, 274
BccI	CCATC	2 cut(s)	14, 383
BciVI	GTATCC	2 cut(s)	180, 237
BclI	TGATCA	1 cut(s)	378
BfuI	GTATCC	2 cut(s)	180, 237
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	80, 205
BmiI	GGNNCC	1 cut(s)	161
BmsI	GCATC	3 cut(s)	186, 319, 421
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	62, 274
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	5 cut(s)	39, 45, 63, 137, 435
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	458
BseDI	CCNNGG	5 cut(s)	39, 45, 63, 137, 435
BseGI	GGATG	3 cut(s)	294, 334, 445
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	231
BshFI	GGCC	6 cut(s)	44, 50, 81, 101, 136, 385
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	381
BsnI	GGCC	6 cut(s)	44, 50, 81, 101, 136, 385
Bsp143I	GATC	5 cut(s)	34, 108, 315, 378, 453
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	6 cut(s)	44, 50, 81, 101, 136, 385
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	5 cut(s)	39, 45, 63, 137, 435
BssMI	GATC	5 cut(s)	34, 108, 315, 378, 453
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	5 cut(s)	39, 45, 63, 137, 435
Bst2BI	CACGAG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	294, 334, 445
BstKTI	GATC	5 cut(s)	37, 111, 318, 381, 456
BstMBI	GATC	5 cut(s)	34, 108, 315, 378, 453
BstNSI	RCATGY	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	119
BstV2I	GAAGAC	2 cut(s)	62, 274
BsuI	GTATCC	2 cut(s)	180, 237
BsuRI	GGCC	6 cut(s)	44, 50, 81, 101, 136, 385
BtsCI	GGATG	3 cut(s)	294, 334, 445
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	187, 237, 339
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	80, 205
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	9 cut(s)	44, 50, 68, 81, 101, 136, 302, 385, 404
CviKI_1	RGCY	9 cut(s)	44, 50, 68, 81, 101, 136, 302, 385, 404
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	5 cut(s)	36, 110, 317, 380, 455
DpnII	GATC	5 cut(s)	34, 108, 315, 378, 453
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	5 cut(s)	39, 45, 63, 137, 435
Eco147I	AGGCCT	2 cut(s)	50, 385
Eco47I	GGWCC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	5 cut(s)	39, 45, 63, 137, 435
ErhI	CCWWGG	5 cut(s)	39, 45, 63, 137, 435
FaeI	CATG	1 cut(s)	14
FaiI	YATR	1 cut(s)	12
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	378
FokI	GGATG	3 cut(s)	281, 341, 452
HaeIII	GGCC	6 cut(s)	44, 50, 81, 101, 136, 385
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	2 cut(s)	292, 417
HindII	GTYRAC	2 cut(s)	292, 417
HinfI	GANTC	2 cut(s)	242, 459
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	292, 370, 417
Hpy188I	TCNGA	3 cut(s)	299, 357, 458
Hpy188III	TCNNGA	2 cut(s)	91, 112
Hpy8I	GTNNAC	3 cut(s)	292, 370, 417
HpyAV	CCTTC	2 cut(s)	91, 394
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	10, 14, 185, 248, 332
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	5 cut(s)	34, 108, 315, 378, 453
LpnPI	CCDG	9 cut(s)	63, 96, 97, 118, 137, 367, 397, 399, 435
LweI	GCATC	3 cut(s)	186, 319, 421
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	5 cut(s)	36, 110, 317, 380, 455
MboI	GATC	5 cut(s)	34, 108, 315, 378, 453
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	1 cut(s)	256
MseI	TTAA	1 cut(s)	466
MspI	CCGG	1 cut(s)	422
NdeII	GATC	5 cut(s)	34, 108, 315, 378, 453
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PceI	AGGCCT	2 cut(s)	50, 385
PfeI	GAWTC	1 cut(s)	459
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	80, 205
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	466
Sau3AI	GATC	5 cut(s)	34, 108, 315, 378, 453
Sau96I	GGNCC	2 cut(s)	80, 205
SchI	GAGTC	1 cut(s)	251
SetI	ASST	4 cut(s)	304, 377, 411, 416
SfaNI	GCATC	3 cut(s)	186, 319, 421
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	2 cut(s)	50, 385
SsiI	CCGC	1 cut(s)	175
StuI	AGGCCT	2 cut(s)	50, 385
StyI	CCWWGG	5 cut(s)	39, 45, 63, 137, 435
TaiI	ACGT	1 cut(s)	411
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TscAI	CASTG	3 cut(s)	187, 244, 339
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	266, 274
TspRI	CASTG	3 cut(s)	187, 244, 339
VpaK11BI	GGWCC	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.