Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

20500234 .. 20501738

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCTCCAGCTAAAGTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAAAGCAGTGAAATCTGGCCAAATCGTTAAAAAGCCTGCGAAGAAGATCAGGACAAAGGTTACTTTCCACAGGCCAAAGACATTGACCGTTCCTAGAAAGCCTAAGTACCCAAAGATCAGTGCTACTCCAAGGAACAAATTGGATCATTACCAGATCCTCAAGTACCCTCTCACTACTGAATCTGCCATGAAAAAGATTGAAGACAACAACACCTTAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGATTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

154

Amino Acids

17.4

Weight (kDa)

10.23

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 63	1.9e-17	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 134	7.1e-14	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	214, 216, 464
AcoI	YGGCCR	1 cut(s)	82
AfaI	GTAC	2 cut(s)	173, 230
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	58, 266
AluBI	AGCT	2 cut(s)	11, 62
AluI	AGCT	2 cut(s)	11, 62
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	214, 216, 464
AoxI	GGCC	3 cut(s)	82, 137, 380
ApeKI	GCWGC	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	273, 277
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	381
BmsI	GCATC	2 cut(s)	316, 418
BpiI	GAAGAC	2 cut(s)	273, 277
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse21I	CCTNAGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	297, 442
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	84, 139, 382
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	84, 139, 382
Bsp143I	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
BspANI	GGCC	3 cut(s)	84, 139, 382
BspPI	GGATC	3 cut(s)	214, 216, 464
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	4 cut(s)	42, 48, 168, 280
BstF5I	GGATG	2 cut(s)	297, 442
BstKTI	GATC	6 cut(s)	114, 183, 211, 222, 321, 459
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	273, 277
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	84, 139, 382
BtsCI	GGATG	2 cut(s)	297, 442
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 190
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	172, 229
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	2 cut(s)	172, 229
DdeI	CTNAG	4 cut(s)	42, 48, 168, 280
DpnI	GATC	6 cut(s)	113, 182, 210, 221, 320, 458
DpnII	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
EaeI	YGGCCR	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	254, 345, 405, 426
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	284, 449
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	84, 139, 382
Hin1II	CATG	1 cut(s)	256
HincII	GTYRAC	3 cut(s)	295, 367, 414
HindII	GTYRAC	3 cut(s)	295, 367, 414
HinfI	GANTC	2 cut(s)	245, 415
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	295, 367, 414
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	4 cut(s)	115, 334, 419, 454
Hpy8I	GTNNAC	3 cut(s)	295, 367, 414
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	4 cut(s)	42, 48, 168, 280
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
LpnPI	CCDG	7 cut(s)	21, 66, 100, 114, 121, 230, 432
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	316, 418
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	22, 124
MalI	GATC	6 cut(s)	113, 182, 210, 221, 320, 458
MboI	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
MboII	GAAGA	5 cut(s)	118, 121, 277, 278, 349
MflI	RGATCY	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	233, 243, 383, 402
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
NlaIII	CATG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	173, 230
RsaNI	GTAC	2 cut(s)	172, 229
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	6 cut(s)	111, 180, 208, 219, 318, 456
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	409
SetI	ASST	5 cut(s)	13, 64, 126, 281, 413
SfaNI	GCATC	2 cut(s)	316, 418
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	78, 190
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	269, 277
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	78, 190
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.