Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

23493811 .. 23495607

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1121200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCCCCGCTAAAGTTGACAGCACGAAGAAAAGTGATCCCAAGGCTAAAGCCTTGAAGACTGCCAAGGCTGTGAAATCAGGTCCTGCTTTTAAGAAGAAGGCCAAGAAGATCAGGACATCCGTCACATTCCACAGGCCAAGGACATTGAAGAAGGAAAGGAACCCCAAGTATCCCCGCATCAGTGCAACACCAAGGAACAAATTGGACCATTACCAAATTCTCAAGTATCCATTGACCACTGAGTCTGCAATGAAAAAGATTGAGGACAACAACACCCTTGTTTTCATTGTTGACATCCGAGCTGACAAGAAGAAGATCAAGGATGCGGTGAAGAAGATGTACGACATTCAGACCAAGAAAGTGAACACCTTGATCAGGCCTGATGGAACGAAGAAGGCTTACGTCAGGTTGACACCGGACTATGATGCCTTGGATGTTGCCAACAAGATCGGGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

10.26

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 63	1.3e-18	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 134	7.1e-14	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
AciI	CCGC	3 cut(s)	9, 178, 329
AclWI	GGATC	2 cut(s)	32, 464
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	58, 151
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AlwI	GGATC	2 cut(s)	32, 464
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	4 cut(s)	3, 102, 137, 380
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	4, 83, 208
AsuHPI	GGTGA	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	83, 208
BarI	GAAGNNNNNNTAC	4 cut(s)	326, 358, 386, 418
BbsI	GAAGAC	1 cut(s)	65
BccI	CCATC	1 cut(s)	380
BciVI	GTATCC	2 cut(s)	183, 240
BclI	TGATCA	1 cut(s)	375
BfuI	GTATCC	2 cut(s)	183, 240
Bme18I	GGWCC	2 cut(s)	83, 208
BmgT120I	GGNCC	3 cut(s)	4, 83, 208
BmiI	GGNNCC	2 cut(s)	6, 164
BmsI	GCATC	3 cut(s)	189, 316, 418
BoxI	GACNNNNGTC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	42, 66, 140, 194, 432
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	455
BseDI	CCNNGG	5 cut(s)	42, 66, 140, 194, 432
BseGI	GGATG	4 cut(s)	119, 297, 331, 442
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	5, 104, 139, 382
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	378
BsnI	GGCC	4 cut(s)	5, 104, 139, 382
Bsp143I	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
BspACI	CCGC	3 cut(s)	9, 178, 329
BspANI	GGCC	4 cut(s)	5, 104, 139, 382
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	6, 164
BspPI	GGATC	2 cut(s)	32, 464
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	5 cut(s)	42, 66, 140, 194, 432
BssMI	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
BssT1I	CCWWGG	5 cut(s)	42, 66, 140, 194, 432
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	119, 297, 331, 442
BstKTI	GATC	6 cut(s)	40, 114, 321, 378, 453, 459
BstMBI	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
BstPAI	GACNNNNGTC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	65
BsuI	GTATCC	2 cut(s)	183, 240
BsuRI	GGCC	4 cut(s)	5, 104, 139, 382
BtsCI	GGATG	4 cut(s)	119, 297, 331, 442
BtsIMutI	CAGTG	2 cut(s)	190, 240
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	4, 83, 208
Csp6I	GTAC	1 cut(s)	343
CviJI	RGCY	9 cut(s)	5, 47, 53, 71, 104, 139, 305, 382, 401
CviKI_1	RGCY	9 cut(s)	5, 47, 53, 71, 104, 139, 305, 382, 401
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	6 cut(s)	39, 113, 320, 377, 452, 458
DpnII	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
Eco130I	CCWWGG	5 cut(s)	42, 66, 140, 194, 432
Eco147I	AGGCCT	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	83, 208
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	83
EcoT14I	CCWWGG	5 cut(s)	42, 66, 140, 194, 432
ErhI	CCWWGG	5 cut(s)	42, 66, 140, 194, 432
FaiI	YATR	1 cut(s)	426
FauI	CCCGC	2 cut(s)	16, 185
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	4 cut(s)	106, 284, 338, 449
HaeIII	GGCC	4 cut(s)	5, 104, 139, 382
HapII	CCGG	1 cut(s)	419
HincII	GTYRAC	3 cut(s)	19, 295, 414
HindII	GTYRAC	3 cut(s)	19, 295, 414
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	4 cut(s)	19, 295, 367, 414
Hpy188I	TCNGA	2 cut(s)	302, 354
Hpy188III	TCNNGA	2 cut(s)	115, 454
Hpy8I	GTNNAC	4 cut(s)	19, 295, 367, 414
HpyAV	CCTTC	3 cut(s)	94, 148, 391
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	188, 251
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
LpnPI	CCDG	8 cut(s)	66, 99, 100, 121, 364, 394, 396, 432
LweI	GCATC	3 cut(s)	189, 316, 418
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	6 cut(s)	39, 113, 320, 377, 452, 458
MboI	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
MluCI	AATT	2 cut(s)	203, 219
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	1 cut(s)	259
MseI	TTAA	2 cut(s)	93, 463
MspI	CCGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
NlaIV	GGNNCC	2 cut(s)	6, 164
NmuCI	GTSAC	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	382
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	6, 164
PspPI	GGNCC	3 cut(s)	4, 83, 208
PspPPI	RGGWCCY	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	93, 463
Sau3AI	GATC	6 cut(s)	37, 111, 318, 375, 450, 456
Sau96I	GGNCC	3 cut(s)	4, 83, 208
SchI	GAGTC	1 cut(s)	254
SetI	ASST	5 cut(s)	85, 307, 374, 408, 413
SfaNI	GCATC	3 cut(s)	189, 316, 418
SinI	GGWCC	2 cut(s)	83, 208
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	203, 219
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	3 cut(s)	9, 178, 329
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	5 cut(s)	42, 66, 140, 194, 432
TaiI	ACGT	1 cut(s)	408
TasI	AATT	2 cut(s)	203, 219
Tru1I	TTAA	2 cut(s)	93, 463
Tru9I	TTAA	2 cut(s)	93, 463
TscAI	CASTG	2 cut(s)	190, 247
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	269, 277
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	190, 247
VpaK11BI	GGWCC	2 cut(s)	83, 208
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.