Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

16474149 .. 16476141

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGAACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0015934 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

154

Amino Acids

17.44

Weight (kDa)

10.2

Isoelectric Point (pI)

23.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 63	1e-16	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 134	7.1e-14	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	32, 216
AfaI	GTAC	2 cut(s)	173, 230
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	135, 164
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	58, 94, 266
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	32, 216
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	4 cut(s)	45, 51, 137, 380
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	118, 229
AvaII	GGWCC	1 cut(s)	117
AxyI	CCTNAGG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	2 cut(s)	316, 418
BoxI	GACNNNNGTC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	48, 120, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 164
Bse1I	ACTGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	48, 120, 194
BseGI	GGATG	3 cut(s)	331, 348, 442
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	2 cut(s)	135, 164
BseNI	ACTGG	1 cut(s)	169
BshFI	GGCC	4 cut(s)	47, 53, 139, 382
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	135, 164
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	47, 53, 139, 382
Bsp143I	GATC	3 cut(s)	37, 208, 450
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	4 cut(s)	47, 53, 139, 382
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	32, 216
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	48, 120, 194
BssMI	GATC	3 cut(s)	37, 208, 450
BssT1I	CCWWGG	3 cut(s)	48, 120, 194
BstAFI	CTTAAG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	331, 348, 442
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	40, 211, 453
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	37, 208, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstPAI	GACNNNNGTC	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	47, 53, 139, 382
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	331, 348, 442
BtsIMutI	CAGTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	172, 229
CviQI	GTAC	2 cut(s)	172, 229
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	39, 210, 452
DpnII	GATC	3 cut(s)	37, 208, 450
Eco130I	CCWWGG	3 cut(s)	48, 120, 194
Eco147I	AGGCCT	2 cut(s)	53, 382
Eco47I	GGWCC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	187
Eco81I	CCTNAGG	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	48, 120, 194
ErhI	CCWWGG	3 cut(s)	48, 120, 194
FaiI	YATR	2 cut(s)	345, 426
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	3 cut(s)	335, 338, 449
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	47, 53, 139, 382
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	145, 245
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	118, 229
Hpy166II	GTNNAC	2 cut(s)	295, 367
Hpy188III	TCNNGA	2 cut(s)	94, 352
Hpy8I	GTNNAC	2 cut(s)	295, 367
HpyAV	CCTTC	6 cut(s)	25, 52, 94, 100, 139, 391
HpyCH4IV	ACGT	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	405
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	37, 208, 450
LpnPI	CCDG	8 cut(s)	21, 66, 121, 150, 364, 365, 396, 432
LweI	GCATC	2 cut(s)	316, 418
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	39, 210, 452
MboI	GATC	3 cut(s)	37, 208, 450
MboII	GAAGA	7 cut(s)	109, 268, 271, 278, 325, 328, 349
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	225, 321, 333
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	3 cut(s)	37, 208, 450
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	124
PceI	AGGCCT	2 cut(s)	53, 382
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	173, 230
RsaNI	GTAC	2 cut(s)	172, 229
SaqAI	TTAA	3 cut(s)	225, 321, 333
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	37, 208, 450
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	139
SetI	ASST	3 cut(s)	126, 131, 408
SfaNI	GCATC	2 cut(s)	316, 418
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SseBI	AGGCCT	2 cut(s)	53, 382
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	2 cut(s)	53, 382
StyI	CCWWGG	3 cut(s)	48, 120, 194
TaiI	ACGT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	225, 321, 333
Tru9I	TTAA	3 cut(s)	225, 321, 333
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	269, 277
TspRI	CASTG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.