Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Reverse (-)

21892239 .. 21894594

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCCGGCTAAAGGTGATGTTTCCAAAAAAGGTGACCCAAAGTCACAAGCCTTGAAGGCTGCCAAAGCATTGAAGTCTGGACCTACTGTTAAGAGAACAGGGAAGAAGATCCGAACATCAGTTACGTTTCATCGGCCTAAGACATTAAAAAAGGAGAGGAACCCTAAGTACCCTCGTATTAGTGCTCCACCAAGGAACAAGCTTGATCATTATCAAATTTTGAAGTATCCTCTTACGACTGAATCTGCAATGAAAAAGATTGAAGATAACAACACTTTGGTATTTATTGTTGACATACGTGCTGACAAGAAGAAAATAAAGGATGCAGTCAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGGCCTGATGGTACTAAAAAGGCCTATGTTAGGTTGACCCCAGATTTTGATGCACTGGATGTGGCAAACAAAATTGGTATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

10.25

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L23eN	PF03939	14 - 64	3.7e-20	Ribosomal protein L23, N-terminal domain
Ribosomal_L23	PF00276	73 - 133	1.4e-13	Ribosomal protein L23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	2 cut(s)	173, 391
AfiI	CCNNNNNNNGG	3 cut(s)	14, 378, 408
AgsI	TTSAA	4 cut(s)	58, 76, 226, 266
AhdI	GACNNNNNGTC	1 cut(s)	43
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	3 cut(s)	137, 380, 399
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	29, 47
AvaII	GGWCC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	2 cut(s)	208, 375
BfuI	GTATCC	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	6, 164
BmsI	GCATC	2 cut(s)	316, 418
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 378, 408
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	331, 442
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	14, 378, 408
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	139, 382, 401
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	14, 378, 408
BsnI	GGCC	3 cut(s)	139, 382, 401
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	111, 208, 375
BspANI	GGCC	3 cut(s)	139, 382, 401
BspLI	GGNNCC	2 cut(s)	6, 164
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	111, 208, 375
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	141, 168
BstEII	GGTNACC	1 cut(s)	35
BstENI	CCTNNNNNAGG	2 cut(s)	376, 406
BstF5I	GGATG	2 cut(s)	331, 442
BstKTI	GATC	3 cut(s)	114, 211, 378
BstMBI	GATC	3 cut(s)	111, 208, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstPI	GGTNACC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	139, 382, 401
BtsCI	GGATG	2 cut(s)	331, 442
BtsIMutI	CAGTG	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	172, 390
CviJI	RGCY	8 cut(s)	5, 11, 53, 62, 139, 205, 382, 401
CviKI_1	RGCY	8 cut(s)	5, 11, 53, 62, 139, 205, 382, 401
CviQI	GTAC	2 cut(s)	172, 390
DdeI	CTNAG	2 cut(s)	141, 168
DpnI	GATC	3 cut(s)	113, 210, 377
DpnII	GATC	3 cut(s)	111, 208, 375
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	2 cut(s)	382, 401
Eco47I	GGWCC	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	2 cut(s)	376, 406
EcoO65I	GGTNACC	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaiI	YATR	3 cut(s)	299, 345, 405
FbaI	TGATCA	2 cut(s)	208, 375
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	338, 449
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	139, 382, 401
HapII	CCGG	1 cut(s)	8
HincII	GTYRAC	2 cut(s)	295, 414
HindII	GTYRAC	2 cut(s)	295, 414
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	29, 47
Hpy166II	GTNNAC	2 cut(s)	295, 414
Hpy188I	TCNGA	2 cut(s)	116, 354
Hpy188III	TCNNGA	2 cut(s)	81, 334
Hpy8I	GTNNAC	2 cut(s)	295, 414
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	128, 301
HpyCH4V	TGCA	3 cut(s)	251, 329, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	2 cut(s)	141, 168
HpySE526I	ACGT	2 cut(s)	128, 301
Ksp22I	TGATCA	2 cut(s)	208, 375
Kzo9I	GATC	3 cut(s)	111, 208, 375
LmnI	GCTCC	2 cut(s)	10, 193
LpnPI	CCDG	7 cut(s)	21, 66, 87, 364, 396, 419, 432
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	316, 418
MaeII	ACGT	2 cut(s)	128, 301
MaeIII	GTNAC	3 cut(s)	35, 45, 124
MalI	GATC	3 cut(s)	113, 210, 377
MboI	GATC	3 cut(s)	111, 208, 375
MboII	GAAGA	4 cut(s)	118, 121, 278, 325
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	219, 450
MnlI	CCTC	3 cut(s)	153, 186, 243
MseI	TTAA	2 cut(s)	93, 149
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	3 cut(s)	111, 208, 375
NlaIV	GGNNCC	2 cut(s)	6, 164
NmuCI	GTSAC	2 cut(s)	35, 45
PceI	AGGCCT	2 cut(s)	382, 401
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	6, 164
PspPI	GGNCC	1 cut(s)	83
PsrI	GAACNNNNNNTAC	4 cut(s)	109, 141, 155, 187
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	173, 391
RsaNI	GTAC	2 cut(s)	172, 390
SaqAI	TTAA	2 cut(s)	93, 149
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	111, 208, 375
Sau96I	GGNCC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	19, 37, 88, 131, 207, 304, 374, 413
SfaNI	GCATC	2 cut(s)	316, 418
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	219, 450
SseBI	AGGCCT	2 cut(s)	382, 401
StuI	AGGCCT	2 cut(s)	382, 401
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	2 cut(s)	131, 304
TasI	AATT	2 cut(s)	219, 450
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	93, 149
Tru9I	TTAA	2 cut(s)	93, 149
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	2 cut(s)	35, 45
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	35, 45
TspDTI	ATGAA	2 cut(s)	122, 269
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	83
XagI	CCTNNNNNAGG	2 cut(s)	376, 406
XapI	RAATTY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.