Rh1CG310400

Belongs to the universal ribosomal protein uL23 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
58445763 .. 58448151
2389 bp
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UTR
Exon/CDS
Intron
Rh1CG310400.1

Sequence Viewer

Length: 459 bp
ATGGCCCCTAAAGTTGACGGTAAGAAGGCTGATCCCAAGGCTCAGGCCTTGAAGACTGCCAAGGCTGTGAAGTCAGGGCCAACCTTCAAGAAGAAGGCTAAGAAGATCAGGACATCAGTCACATTCCACAGGCCAAGGACATTGAAGAAGGAAAGGAACCCCAAGTACCCCCGCATTAGCGCACCACCAAGAAACAAGTTGGACCATTACCAGATCCTCAAGTATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGACAACAATACCCTTGTTTTCATTGTTGACATCCGTGCTGATAAGAAGAAAATTAAGGATGCAGTGAAGAAGATGTACGACATTCAGACCAAGAAAGTGAATACTCTGATCAGGCCTGATGGAACGAAGAAGGCATATGTTAGGTTGACACCTGATTACGATGCATTGGATGTGGCTAACAAGATCGGCATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

17.32

Weight (kDa)

10.24

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23eN PF03939 12 - 62 3.3e-19 Ribosomal protein L23, N-terminal domain
Ribosomal_L23 PF00276 71 - 132 7.2e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 26, 208
AfaI GTAC 2 cut(s) 167, 338
AgsI TTSAA 3 cut(s) 52, 88, 145
AlwI GGATC 2 cut(s) 26, 208
AoxI GGCC 5 cut(s) 3, 45, 77, 131, 374
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 4, 77, 202
AvaII GGWCC 1 cut(s) 202
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 1 cut(s) 374
BciVI GTATCC 1 cut(s) 234
BclI TGATCA 1 cut(s) 369
BfuI GTATCC 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 4, 77, 202
BmiI GGNNCC 2 cut(s) 6, 158
BmsI GCATC 2 cut(s) 310, 412
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 36, 60, 134
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 449
BseDI CCNNGG 3 cut(s) 36, 60, 134
BseGI GGATG 3 cut(s) 291, 325, 436
BseJI GATNNNNATC 1 cut(s) 449
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 56, 228
BshFI GGCC 5 cut(s) 5, 47, 79, 133, 376
BsnI GGCC 5 cut(s) 5, 47, 79, 133, 376
Bsp143I GATC 5 cut(s) 31, 105, 213, 369, 444
BspACI CCGC 1 cut(s) 172
BspANI GGCC 5 cut(s) 5, 47, 79, 133, 376
BspCNI CTCAG 2 cut(s) 55, 229
BspLI GGNNCC 2 cut(s) 6, 158
BspPI GGATC 2 cut(s) 26, 208
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 36, 60, 134
BssMI GATC 5 cut(s) 31, 105, 213, 369, 444
BssT1I CCWWGG 3 cut(s) 36, 60, 134
Bst4CI ACNGT 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 42, 99, 237
BstF5I GGATG 3 cut(s) 291, 325, 436
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 5 cut(s) 34, 108, 216, 372, 447
BstMBI GATC 5 cut(s) 31, 105, 213, 369, 444
BstPAI GACNNNNGTC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 5 cut(s) 5, 47, 79, 133, 376
BtsCI GGATG 3 cut(s) 291, 325, 436
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 234, 330
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 4, 77, 202
Csp6I GTAC 2 cut(s) 166, 337
CviQI GTAC 2 cut(s) 166, 337
DdeI CTNAG 3 cut(s) 42, 99, 237
DpnI GATC 5 cut(s) 33, 107, 215, 371, 446
DpnII GATC 5 cut(s) 31, 105, 213, 369, 444
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
Eco130I CCWWGG 3 cut(s) 36, 60, 134
Eco147I AGGCCT 2 cut(s) 47, 376
Eco47I GGWCC 1 cut(s) 202
EcoT14I CCWWGG 3 cut(s) 36, 60, 134
EcoT22I ATGCAT 1 cut(s) 427
ErhI CCWWGG 3 cut(s) 36, 60, 134
FaiI YATR 4 cut(s) 397, 399, 455, 457
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 369
FokI GGATG 3 cut(s) 278, 332, 443
GlaI GCGC 1 cut(s) 181
HaeIII GGCC 5 cut(s) 5, 47, 79, 133, 376
HhaI GCGC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 3 cut(s) 16, 289, 408
HindII GTYRAC 3 cut(s) 16, 289, 408
HinfI GANTC 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 16, 289, 408
Hpy188I TCNGA 2 cut(s) 348, 369
Hpy188III TCNNGA 2 cut(s) 88, 109
Hpy8I GTNNAC 3 cut(s) 16, 289, 408
HpyAV CCTTC 5 cut(s) 19, 88, 94, 142, 385
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 245, 323, 425
HpyF3I CTNAG 3 cut(s) 42, 99, 237
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 5 cut(s) 31, 105, 213, 369, 444
LpnPI CCDG 8 cut(s) 29, 60, 94, 115, 224, 358, 390, 426
LweI GCATC 2 cut(s) 310, 412
MaeIII GTNAC 1 cut(s) 118
MalI GATC 5 cut(s) 33, 107, 215, 371, 446
MboI GATC 5 cut(s) 31, 105, 213, 369, 444
MflI RGATCY 1 cut(s) 213
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 227, 253
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 1 cut(s) 315
NdeI CATATG 1 cut(s) 397
NdeII GATC 5 cut(s) 31, 105, 213, 369, 444
NlaIV GGNNCC 2 cut(s) 6, 158
NmuCI GTSAC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 427
PceI AGGCCT 2 cut(s) 47, 376
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 6, 158
PspPI GGNCC 3 cut(s) 4, 77, 202
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 167, 338
RsaNI GTAC 2 cut(s) 166, 337
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 5 cut(s) 31, 105, 213, 369, 444
Sau96I GGNCC 3 cut(s) 4, 77, 202
SchI GAGTC 1 cut(s) 248
SetI ASST 3 cut(s) 86, 407, 415
SfaNI GCATC 2 cut(s) 310, 412
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 312
SseBI AGGCCT 2 cut(s) 47, 376
SsiI CCGC 1 cut(s) 172
StuI AGGCCT 2 cut(s) 47, 376
StyI CCWWGG 3 cut(s) 36, 60, 134
TaaI ACNGT 1 cut(s) 20
TasI AATT 1 cut(s) 312
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 241, 330
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 263, 271
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 241, 330
VpaK11BI GGWCC 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.