Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357125.1

Orthogroup ID

OG0004700

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 736

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357125.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

ttgacggtaagaaggctgatcccaaggctcaggccttgaagactgccaaggctgtgaagtcagggccaaccttcaagaagaaggctaagaagatcaggacatcggtcacattccacaggccaaggacattgaagaaggaaaggaaccccaagtacccccgcattagcgcaccaccaagaaacaagttggaccattaccagatcctcaagtacccattgaccactgagtctgcaatgaagaagattgaggacaacaatacccttgttttcattgttgatatccgtgctgataagaagaaaattaaggatgcagtgaagaagatgtacgacattcagaccaagaaagtgaatactctgatcaggcctgatggaacgaagaaggcatatgttaggttgacacctgattacgatgcattggatgtggctaacaagatcggcatcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

147

Amino Acids

16.79

Weight (kDa)

10.22

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39460 AT2G39460 AT3G55280 AT3G55280 AT3G55280
fragaria_vesca	FvH4_3g34890 FvH4_3g34890 FvH4_7g21380
malus_domestica	MD01G1121200.v1.1 MD03G1100500.v1.1
prunus_persica	Prupe.2G228900_v2.0.a1 Prupe.6G085500_v2.0.a1
pyrus_communis	pycom03g08260 pycom07g18020 pycom11g09630
rosa_chinensis	RchiOBHm_Chr1g0365741 RchiOBHm_Chr5g0062761
rosa_laevigata	RLG00000027404 RLG00000035575
rosa_multiflora	Rmu_co8357125.1_g000001 Rmu_sc0002093.1_g000031 Rmu_sc0004311.1_g000020
rosa_roxburghii	Rroxscaffold_1G00017860 Rroxscaffold_4G00290940
rosa_rugosa	Rorug01G0323800 Rorug05G0351600 Rorug05G0351600
rosa_samantha	Rh1CG310400 Rh1DG325700
rosa_wichuraiana	Rw1G029520 Rw5G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	225
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	13, 195
AfaI	GTAC	3 cut(s)	154, 211, 325
AgsI	TTSAA	3 cut(s)	39, 75, 132
AlwI	GGATC	2 cut(s)	13, 195
AoxI	GGCC	4 cut(s)	32, 64, 118, 361
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	64, 189
AvaII	GGWCC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
BbsI	GAAGAC	1 cut(s)	46
BccI	CCATC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	64, 189
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	297, 399
BoxI	GACNNNNGTC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	23, 47, 121
Bse3DI	GCAATG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	23, 47, 121
BseGI	GGATG	2 cut(s)	312, 423
BseJI	GATNNNNATC	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	43, 215
BshFI	GGCC	4 cut(s)	34, 66, 120, 363
BsnI	GGCC	4 cut(s)	34, 66, 120, 363
Bsp143I	GATC	5 cut(s)	18, 92, 200, 356, 431
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	4 cut(s)	34, 66, 120, 363
BspCNI	CTCAG	2 cut(s)	42, 216
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	13, 195
BsrDI	GCAATG	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	23, 47, 121
BssMI	GATC	5 cut(s)	18, 92, 200, 356, 431
BssT1I	CCWWGG	3 cut(s)	23, 47, 121
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	29, 86, 224
BstF5I	GGATG	2 cut(s)	312, 423
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	5 cut(s)	21, 95, 203, 359, 434
BstMBI	GATC	5 cut(s)	18, 92, 200, 356, 431
BstPAI	GACNNNNGTC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	34, 66, 120, 363
BtsCI	GGATG	2 cut(s)	312, 423
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	221, 317
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	64, 189
Csp6I	GTAC	3 cut(s)	153, 210, 324
CviJI	RGCY	9 cut(s)	16, 28, 34, 52, 66, 85, 120, 363, 424
CviKI_1	RGCY	9 cut(s)	16, 28, 34, 52, 66, 85, 120, 363, 424
CviQI	GTAC	3 cut(s)	153, 210, 324
DdeI	CTNAG	3 cut(s)	29, 86, 224
DpnI	GATC	5 cut(s)	20, 94, 202, 358, 433
DpnII	GATC	5 cut(s)	18, 92, 200, 356, 431
DrdI	GACNNNNNNGTC	1 cut(s)	225
DseDI	GACNNNNNNGTC	1 cut(s)	225
Eco130I	CCWWGG	3 cut(s)	23, 47, 121
Eco147I	AGGCCT	2 cut(s)	34, 363
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	3 cut(s)	23, 47, 121
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	3 cut(s)	23, 47, 121
FaiI	YATR	4 cut(s)	384, 386, 442, 444
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	384
FbaI	TGATCA	1 cut(s)	356
FokI	GGATG	2 cut(s)	319, 430
GlaI	GCGC	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	34, 66, 120, 363
HhaI	GCGC	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HinfI	GANTC	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	335, 356
Hpy188III	TCNNGA	2 cut(s)	75, 96
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	5 cut(s)	6, 75, 81, 129, 372
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	232, 310, 412
HpyF3I	CTNAG	3 cut(s)	29, 86, 224
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	356
Kzo9I	GATC	5 cut(s)	18, 92, 200, 356, 431
LpnPI	CCDG	8 cut(s)	16, 47, 81, 102, 211, 345, 377, 413
LweI	GCATC	2 cut(s)	297, 399
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	5 cut(s)	20, 94, 202, 358, 433
MboI	GATC	5 cut(s)	18, 92, 200, 356, 431
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	214, 240
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	302
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	5 cut(s)	18, 92, 200, 356, 431
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	414
PceI	AGGCCT	2 cut(s)	34, 363
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PshAI	GACNNNNGTC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	64, 189
PsrI	GAACNNNNNNTAC	2 cut(s)	136, 168
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	3 cut(s)	154, 211, 325
RsaNI	GTAC	3 cut(s)	153, 210, 324
SaqAI	TTAA	1 cut(s)	302
Sau3AI	GATC	5 cut(s)	18, 92, 200, 356, 431
Sau96I	GGNCC	2 cut(s)	64, 189
SchI	GAGTC	1 cut(s)	235
SetI	ASST	3 cut(s)	73, 394, 402
SfaNI	GCATC	2 cut(s)	297, 399
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	299
SseBI	AGGCCT	2 cut(s)	34, 363
SsiI	CCGC	1 cut(s)	159
StuI	AGGCCT	2 cut(s)	34, 363
StyI	CCWWGG	3 cut(s)	23, 47, 121
TaaI	ACNGT	1 cut(s)	7
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	228, 317
TseFI	GTSAC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	250, 258
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	228, 317
VpaK11BI	GGWCC	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.