Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009485

Physical Location & Seq

Genomic Coordinates Reverse (-)

25432126 .. 25434653

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGACCCTGCAGAACTCACCTTCCCTCCACAGGACCCTTGTGCTCAACTCTTTCACTAAGTTGCATAAGCAAAGCACATTCCATTGCTGTAGAAGAAGCAATTCGTTCTTGGTAAGAGCAGAGCAAACTCCGGCATCTTCAACATGCTCTCCTTCTCAAGATAGATCTGGGAGACGCCAAGTACTAGCTGCAGGGACAATTGCTTCTTGGGTTTTTCTAACTAATCAACATTCTGTGTCATTTGCTGCAGAAAATAAAAAGGGATTTCTGCCAGTCACGGACAAGACAGACGGGTACGAATTTGTTTATCCCTTTGGGTGGCAGGAAGTAACCGTTGAAGGTCAAGACAAGGTCTTCAAGGATGTCATTGAACCATTAGAGACTGTAAGTGTGAATGTCTTCCCAACCGTCAAGCAAGACATTAAGGAATTCGGGTCACCACAGCAGGTGGCTGAAGTTTTAATCAAGAAGGTTCTGGCTCCTCCTACCCAGAAAACAAAACTGATTGAGGCAGTAGAGCATGAAATTGATGGGAAAACATATTACACTTTCGAGTTCGTTGCGAAGGCTCCAAACTATACTCGCCACGCGCTCAGCACGATATCTATTGGCAATGGCAAGTTCTTCACTTTGACCACTGGGGCCAATGAGAGGAGGTGGGGTAAGATGAAAGACAAATTACACACCGTCGTTGATTCTTTCAAAATCTTCAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

241

Amino Acids

27.0

Weight (kDa)

9.36

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55330
fragaria_vesca	FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370
malus_domestica	MD01G1121300.v1.1
prunus_persica	Prupe.2G229000_v2.0.a1 Prupe.2G229000_v2.0.a1
pyrus_communis	pycom01g14830 pycom07g18030
rosa_chinensis	RchiOBHm_Chr1g0365751
rosa_laevigata	RLG00000027403
rosa_multiflora	Rmu_sc0002093.1_g000032 Rmu_sc0004311.1_g000019
rosa_roxburghii	Rroxscaffold_4G00290930
rosa_rugosa	Rorug01G0323800
rosa_samantha	Rh1AG332600 Rh1BG293500 Rh1CG310300 Rh1DG325800
rosa_wichuraiana	Rw1G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	1 cut(s)	593
AcsI	RAATTY	2 cut(s)	302, 431
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	2 cut(s)	186, 299
AfiI	CCNNNNNNNGG	3 cut(s)	33, 321, 654
AgsI	TTSAA	6 cut(s)	144, 341, 361, 374, 706, 715
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	169, 377
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	191, 248
ApoI	RAATTY	2 cut(s)	302, 431
Asp700I	GAANNNNTTC	2 cut(s)	103, 401
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	36, 645
AsuHPI	GGTGA	2 cut(s)	12, 432
AvaII	GGWCC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	349, 394
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	178, 235
BccI	CCATC	1 cut(s)	527
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BcoDI	GTCTC	2 cut(s)	169, 377
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	4 cut(s)	11, 91, 192, 249
BfuAI	ACCTGC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	2 cut(s)	192, 249
BlpI	GCTNAGC	1 cut(s)	596
BlsI	GCNGC	2 cut(s)	193, 250
BmcAI	AGTACT	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 645
BmiI	GGNNCC	4 cut(s)	38, 483, 573, 646
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	2 cut(s)	349, 394
Bpu1102I	GCTNAGC	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	178
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 136, 166, 649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 321, 654
Bse1I	ACTGG	2 cut(s)	275, 646
Bse3DI	GCAATG	2 cut(s)	85, 622
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	3 cut(s)	33, 321, 654
BseMI	GCAATG	2 cut(s)	85, 622
BseMII	CTCAG	1 cut(s)	610
BseNI	ACTGG	2 cut(s)	275, 646
BseRI	GAGGAG	2 cut(s)	474, 670
BseXI	GCAGC	2 cut(s)	178, 235
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	3 cut(s)	33, 321, 654
BsmAI	GTCTC	2 cut(s)	169, 377
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	167
Bsp1720I	GCTNAGC	1 cut(s)	596
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	1 cut(s)	609
BspFNI	CGCG	1 cut(s)	593
BspLI	GGNNCC	4 cut(s)	38, 483, 573, 646
BspMAI	CTGCAG	3 cut(s)	15, 196, 253
BspMI	ACCTGC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	85, 622
BsrI	ACTGG	2 cut(s)	275, 646
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	337, 388, 412, 691
BstACI	GRCGYC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	60, 596
BstEII	GGTNACC	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	2 cut(s)	169, 377
BstMBI	GATC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	150
BstPI	GGTNACC	1 cut(s)	438
BstSFI	CTRYAG	4 cut(s)	11, 91, 192, 249
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	178, 235
BstV2I	GAAGAC	2 cut(s)	349, 394
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	639
BveI	ACCTGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	36, 645
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	185, 298
CviAII	CATG	2 cut(s)	147, 524
CviJI	RGCY	5 cut(s)	191, 455, 482, 572, 647
CviKI_1	RGCY	5 cut(s)	191, 455, 482, 572, 647
CviQI	GTAC	2 cut(s)	185, 298
DdeI	CTNAG	2 cut(s)	60, 596
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	150, 527
FaiI	YATR	5 cut(s)	69, 148, 525, 544, 582
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	146, 523
Fnu4HI	GCNGC	2 cut(s)	192, 249
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	192, 249
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	2 cut(s)	192, 249
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	150, 527
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	1 cut(s)	698
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	12, 432
Hpy188I	TCNGA	1 cut(s)	722
Hpy188III	TCNNGA	3 cut(s)	161, 347, 469
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	5 cut(s)	33, 165, 335, 466, 562
HpyCH4III	ACNGT	4 cut(s)	337, 388, 412, 691
HpyCH4V	TGCA	4 cut(s)	13, 67, 194, 251
HpyF3I	CTNAG	2 cut(s)	60, 596
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	150, 527
HspAI	GCGC	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	487, 577
Lsp1109I	GCAGC	2 cut(s)	178, 235
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	277, 331, 438
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	6 cut(s)	108, 132, 349, 394, 619, 703
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	6 cut(s)	103, 201, 302, 431, 528, 680
MnlI	CCTC	5 cut(s)	38, 495, 505, 648, 651
MroXI	GAANNNNTTC	2 cut(s)	103, 401
MseI	TTAA	2 cut(s)	426, 464
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	593
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	150, 527
NlaIV	GGNNCC	4 cut(s)	38, 483, 573, 646
NmuCI	GTSAC	2 cut(s)	277, 438
NspI	RCATGY	1 cut(s)	150
PaqCI	CACCTGC	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	103, 401
PfeI	GAWTC	1 cut(s)	698
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	193, 250
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	38, 483, 573, 646
PspPI	GGNCC	2 cut(s)	36, 645
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	15, 196, 253
PsuI	RGATCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	2 cut(s)	186, 299
RsaNI	GTAC	2 cut(s)	185, 298
SaqAI	TTAA	2 cut(s)	426, 464
SatI	GCNGC	2 cut(s)	192, 249
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	2 cut(s)	36, 645
ScaI	AGTACT	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	25, 193, 346, 357, 453, 477, 662
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	4 cut(s)	11, 91, 192, 249
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	6 cut(s)	103, 201, 302, 431, 528, 680
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	4 cut(s)	337, 388, 412, 691
TaqI	TCGA	1 cut(s)	555
TasI	AATT	6 cut(s)	103, 201, 302, 431, 528, 680
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	2 cut(s)	426, 464
Tru9I	TTAA	2 cut(s)	426, 464
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	2 cut(s)	277, 438
TseI	GCWGC	2 cut(s)	191, 248
Tsp45I	GTSAC	2 cut(s)	277, 438
TspDTI	ATGAA	2 cut(s)	540, 686
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	646
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	2 cut(s)	302, 431
XceI	RCATGY	1 cut(s)	150
XmnI	GAANNNNTTC	2 cut(s)	103, 401
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.