RLG00000027403

psbP-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009485
Physical Location & Seq
Forward (+)
11244373 .. 11246118
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027403

Sequence Viewer

Length: 738 bp
ATGGCGACCTTGCAGAACTCACCTTCACTCCACAGGACCCTTGTGCTCAACTCCTTCACTAAGGTACAAAATAAGCAAAGCAATTCACATTGCTATAGAAGAAGCGTGTCGTTTTTGGTAAGAGCAGAGCAAGCTTCATCGTCTTCAGCATGCTCTCCTTCTCAAGATAGATCCGGGAGACGCCAGGTACTAGCTGCAGGGACAATTGCTTCTTGGGCTTATCTCATGAACCAACATTCTGTATCATTTGCTGCAGAAAATAAAAAGAATTTTCAGCTTGTTACGGACAAGAAAGACGGATACGAATTTGTCTACCCTTTTGGGTGGCAGGAAGTTTCCATTGAAGGCCAAGACAAGGTATTCAAGGATGTGATTGAGCCACTAGAGACTGCGAGTGTGACTCTCTTCCCAACTGTCAAGGAAGACATCAAGGAATTTGGGACTCCACAAGAGGTGGCGGAGACTTTGATCAAGAAGGTTCTGGCTCCTCCTACCCAGAAAACAAAGCTGATTGAGGCATCAGAGCACGAGATTGATGGGAAAACATATTACACTTTTGAGTTTGTGGCCAAGGCTCCAAACTATACTCGCCACGCTCTAAGCACAATATCTGTTAACAATGGTAAATTCTACACATTGACGACGGGAGCCAACGAAAGGAGGTGGGGGAAGATGAAAGAAAAATTACACACCATAGTTGATTCCTTCAAACTTTTCAAAGTCTATGAAGGCAATTAG

Protein Analysis

246

Amino Acids

27.69

Weight (kDa)

9.15

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 89 - 237 2.1e-55 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 4 cut(s) 268, 305, 434, 626
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 66, 189
AfiI CCNNNNNNNGG 2 cut(s) 355, 657
AgsI TTSAA 4 cut(s) 344, 364, 709, 718
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 4 cut(s) 134, 194, 277, 508
AluI AGCT 4 cut(s) 134, 194, 277, 508
Alw21I GWGCWC 2 cut(s) 48, 528
Alw26I GTCTC 3 cut(s) 172, 380, 455
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 346, 567
ApeKI GCWGC 2 cut(s) 194, 251
ApoI RAATTY 4 cut(s) 268, 305, 434, 626
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 569
BauI CACGAG 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 135, 429
Bbv12I GWGCWC 2 cut(s) 48, 528
BbvI GCAGC 2 cut(s) 181, 238
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 1 cut(s) 185
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 172, 380, 455
BfaI CTAG 2 cut(s) 191, 383
BfmI CTRYAG 3 cut(s) 94, 195, 252
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 2 cut(s) 195, 252
BlsI GCNGC 2 cut(s) 196, 253
Bme1390I CCNGG 2 cut(s) 175, 185
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 4 cut(s) 38, 486, 576, 649
BmrFI CCNGG 2 cut(s) 175, 185
BmsI GCATC 1 cut(s) 527
BpiI GAAGAC 2 cut(s) 135, 429
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpuEI CTTGAG 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 657
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 355, 657
BseMI GCAATG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 181, 238
BshFI GGCC 2 cut(s) 348, 569
BsiHKAI GWGCWC 2 cut(s) 48, 528
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 214, 454
BslI CCNNNNNNNGG 2 cut(s) 355, 657
BsmAI GTCTC 3 cut(s) 172, 380, 455
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 214, 454
BsnI GGCC 2 cut(s) 348, 569
Bsp1286I GDGCHC 2 cut(s) 48, 528
Bsp143I GATC 2 cut(s) 170, 468
BspACI CCGC 1 cut(s) 458
BspANI GGCC 2 cut(s) 348, 569
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 38, 486, 576, 649
BspMAI CTGCAG 2 cut(s) 199, 256
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 2 cut(s) 170, 468
BssNI GRCGYC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 132, 151
BstDEI CTNAG 2 cut(s) 60, 599
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 2 cut(s) 173, 471
BstMAI GTCTC 3 cut(s) 172, 380, 455
BstMBI GATC 2 cut(s) 170, 468
BstMWI GCNNNNNNNGC 2 cut(s) 131, 215
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 173, 183
BstSFI CTRYAG 3 cut(s) 94, 195, 252
BstV1I GCAGC 2 cut(s) 181, 238
BstV2I GAAGAC 2 cut(s) 135, 429
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 348, 569
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 132, 151
CciI TCATGA 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 65, 188
CviAII CATG 2 cut(s) 150, 226
CviQI GTAC 2 cut(s) 65, 188
DdeI CTNAG 2 cut(s) 60, 599
DpnI GATC 2 cut(s) 172, 470
DpnII GATC 2 cut(s) 170, 468
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 153, 229
FaiI YATR 7 cut(s) 96, 151, 227, 547, 585, 695, 726
FaqI GGGAC 2 cut(s) 214, 454
FatI CATG 2 cut(s) 149, 225
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 195, 252
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 195, 252
FspBI CTAG 2 cut(s) 191, 383
GluI GCNGC 2 cut(s) 195, 252
HaeIII GGCC 2 cut(s) 348, 569
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 2 cut(s) 153, 229
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 3 cut(s) 400, 442, 701
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 313, 616
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 3 cut(s) 164, 226, 472
Hpy8I GTNNAC 2 cut(s) 313, 616
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 7 cut(s) 33, 64, 168, 338, 469, 715, 722
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 13, 197, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 215
HpyF3I CTNAG 2 cut(s) 60, 599
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 2 cut(s) 153, 229
Ksp22I TGATCA 1 cut(s) 468
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 2 cut(s) 170, 468
LmnI GCTCC 3 cut(s) 490, 580, 647
LpnPI CCDG 8 cut(s) 19, 170, 183, 187, 197, 314, 467, 509
Lsp1109I GCAGC 2 cut(s) 181, 238
LweI GCATC 1 cut(s) 527
MaeI CTAG 2 cut(s) 191, 383
MaeIII GTNAC 2 cut(s) 280, 397
MalI GATC 2 cut(s) 172, 470
MboI GATC 2 cut(s) 170, 468
MboII GAAGA 5 cut(s) 111, 135, 397, 434, 682
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 48, 528
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 8 cut(s) 82, 204, 268, 305, 434, 626, 683, 733
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 2 cut(s) 394, 436
MnlI CCTC 4 cut(s) 445, 498, 508, 654
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 615
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 175, 185
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 131, 215
NciI CCSGG 1 cut(s) 175
NdeII GATC 2 cut(s) 170, 468
NlaIII CATG 2 cut(s) 153, 229
NlaIV GGNNCC 4 cut(s) 38, 486, 576, 649
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 153
PaeI GCATGC 1 cut(s) 153
PagI TCATGA 1 cut(s) 225
PfeI GAWTC 1 cut(s) 701
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 196, 253
PleI GAGTC 2 cut(s) 394, 436
PpsI GAGTC 2 cut(s) 394, 436
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 4 cut(s) 38, 486, 576, 649
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 2 cut(s) 199, 256
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 66, 189
RsaNI GTAC 2 cut(s) 65, 188
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 2 cut(s) 195, 252
Sau3AI GATC 2 cut(s) 170, 468
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 2 cut(s) 394, 436
ScrFI CCNGG 2 cut(s) 175, 185
SduI GDGCHC 2 cut(s) 48, 528
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 3 cut(s) 94, 195, 252
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 153
Sse9I AATT 8 cut(s) 82, 204, 268, 305, 434, 626, 683, 733
SsiI CCGC 1 cut(s) 458
SspMI CTAG 2 cut(s) 191, 383
StyD4I CCNGG 2 cut(s) 173, 183
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 1 cut(s) 415
TasI AATT 8 cut(s) 82, 204, 268, 305, 434, 626, 683, 733
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 194, 251
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 3 cut(s) 126, 242, 689
TspGWI ACGGA 2 cut(s) 299, 312
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 4 cut(s) 268, 305, 434, 626
XceI RCATGY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 191, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.