Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009485

Physical Location & Seq

Genomic Coordinates Reverse (-)

14917871 .. 14919988

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14830.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCTAACCAGTGCAAGGTGTGTCCTATAACAAGTGATCGCCACAAGACTCCACACACGCACACACCGAGTCCATTTTTCTTCCTGCTTCACTCACTTTCAACAAAACCACCAACAATGGCGACCCTGCAGAACTCACCCTCCCTCCACAGGACCCCTGTCCTTAACTCCTTCACCAAGCTACACAGGCAAAGCACATTCCATTGCTGTAGAAAAAGTAATTCTTTTTCGGTAAGAGCAGAGCAGGCTTCAGCAACTTCTACATGCTCTCCTTCTCAAGATAGATCCGGGAGACGCCAAGTGCTAGCAGCAGGAACAGTTGCTTCTTGGGTTCTTCTAACCAACCAACATTCTGTATCATTTGCTGCAGAAAATAAAAAGGGATTTATTCCTGTCACCGACAAGAAAGATGGATACGAATTTGTCTACCCTTTCGGATGGCAGGAAGTAACCATCGAAGGTCAAGACAAGGTATTCAAGGATGTCATTGAGCCATTGGAGACTGCGAGTGTGACACTGTTCCCAACCGTCAAGCAAGATATCAAAGAATTCGGGCCACCGCAGCAGGTGGCTGAAACTTTGATCAAAAAGGTTCTGGCTCCTCCTACCCAGAAAACAAAGCTGATCGAGGCAGTAGAGCACGACATCGATGGGAAAACATATTACACATTTGAGTTCCTTGCTAAGGCTCCAAACTATACTCGCCATGCTCTCAGTACAGTAGCTATCGGCAATGGCAACTTCTACACGTTGACGACGGGGGCTAACGAGAGGAGGTGGGAAAAGATGAAAGACAAGTTACACACCATCGTCGATTCCTTCAAGCTTTTCAAAGTCTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbP

Protein Analysis

282

Amino Acids

31.64

Weight (kDa)

9.27

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55330
fragaria_vesca	FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370 FvH4_7g21370
malus_domestica	MD01G1121300.v1.1
prunus_persica	Prupe.2G229000_v2.0.a1 Prupe.2G229000_v2.0.a1
pyrus_communis	pycom01g14830 pycom07g18030
rosa_chinensis	RchiOBHm_Chr1g0365751
rosa_laevigata	RLG00000027403
rosa_multiflora	Rmu_sc0002093.1_g000032 Rmu_sc0004311.1_g000019
rosa_roxburghii	Rroxscaffold_4G00290930
rosa_rugosa	Rorug01G0323800
rosa_samantha	Rh1AG332600 Rh1BG293500 Rh1CG310300 Rh1DG325800
rosa_wichuraiana	Rw1G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
Acc36I	ACCTGC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	2 cut(s)	419, 548
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	3 cut(s)	16, 150, 685
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	102, 478, 823, 832
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	4 cut(s)	181, 622, 725, 826
AluI	AGCT	4 cut(s)	181, 622, 725, 826
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	286, 494
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	3 cut(s)	308, 365, 562
ApoI	RAATTY	2 cut(s)	419, 548
AspS9I	GGNCC	2 cut(s)	153, 554
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	129, 166, 388
AsuNHI	GCTAGC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	829
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	320, 352, 574
BccI	CCATC	5 cut(s)	404, 432, 461, 644, 815
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	286, 494
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	3 cut(s)	128, 208, 366
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	309, 366, 563
BlsI	GCNGC	3 cut(s)	310, 367, 564
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	153, 554
BmiI	GGNNCC	3 cut(s)	155, 600, 690
BmrFI	CCNGG	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	308
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	829
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	295
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 129, 155, 159, 253, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 150, 685
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	2 cut(s)	202, 739
BseCI	ATCGAT	1 cut(s)	648
BseGI	GGATG	2 cut(s)	443, 487
BseLI	CCNNNNNNNGG	3 cut(s)	16, 150, 685
BseMI	GCAATG	2 cut(s)	202, 739
BseMII	CTCAG	1 cut(s)	727
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	591, 787
BseXI	GCAGC	3 cut(s)	320, 352, 574
BshFI	GGCC	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	16, 150, 685
BsmAI	GTCTC	2 cut(s)	286, 494
BsmBI	CGTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	37, 284, 582, 624
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	726
BspDI	ATCGAT	1 cut(s)	648
BspLI	GGNNCC	3 cut(s)	155, 600, 690
BspMAI	CTGCAG	2 cut(s)	132, 370
BspMI	ACCTGC	1 cut(s)	556
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	202, 739
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	37, 284, 582, 624
BssNI	GRCGYC	1 cut(s)	295
Bst4CI	ACNGT	4 cut(s)	319, 519, 529, 721
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	246, 306
BstDEI	CTNAG	2 cut(s)	684, 713
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	443, 487
BstKTI	GATC	4 cut(s)	40, 287, 585, 627
BstMAI	GTCTC	2 cut(s)	286, 494
BstMBI	GATC	4 cut(s)	37, 284, 582, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 245, 562
BstNSI	RCATGY	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	3 cut(s)	128, 208, 366
BstV1I	GCAGC	3 cut(s)	320, 352, 574
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	443, 487
BtsIMutI	CAGTG	2 cut(s)	17, 515
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	246, 306
Cfr13I	GGNCC	2 cut(s)	153, 554
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	2 cut(s)	264, 707
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	684, 713
DpnI	GATC	4 cut(s)	39, 286, 584, 626
DpnII	GATC	4 cut(s)	37, 284, 582, 624
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	541
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	267, 710
FaiI	YATR	5 cut(s)	29, 265, 661, 699, 708
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	2 cut(s)	263, 706
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	309, 366, 563
FokI	GGATG	2 cut(s)	450, 494
Fsp4HI	GCNGC	3 cut(s)	309, 366, 563
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	3 cut(s)	309, 366, 563
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	267, 710
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	3 cut(s)	49, 70, 815
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	129, 166, 388
Hpy166II	GTNNAC	2 cut(s)	427, 753
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	2 cut(s)	278, 464
Hpy8I	GTNNAC	2 cut(s)	427, 753
Hpy99I	CGWCG	2 cut(s)	760, 815
HpyAV	CCTTC	4 cut(s)	181, 282, 452, 829
HpyCH4III	ACNGT	4 cut(s)	319, 519, 529, 721
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	3 cut(s)	15, 130, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 245, 562
HpyF3I	CTNAG	2 cut(s)	684, 713
HpySE526I	ACGT	1 cut(s)	749
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	267, 710
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	37, 284, 582, 624
LmnI	GCTCC	2 cut(s)	604, 694
Lsp1109I	GCAGC	3 cut(s)	320, 352, 574
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	4 cut(s)	394, 448, 511, 798
MalI	GATC	4 cut(s)	39, 286, 584, 626
MboI	GATC	4 cut(s)	37, 284, 582, 624
MboII	GAAGA	3 cut(s)	73, 326, 829
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	3 cut(s)	220, 419, 548
MlyI	GAGTC	2 cut(s)	43, 79
MnlI	CCTC	6 cut(s)	151, 155, 612, 622, 765, 768
MseI	TTAA	2 cut(s)	165, 844
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	187, 245, 562
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	4 cut(s)	37, 284, 582, 624
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	267, 710
NlaIV	GGNNCC	3 cut(s)	155, 600, 690
NmuCI	GTSAC	2 cut(s)	394, 511
NspI	RCATGY	1 cut(s)	267
PaqCI	CACCTGC	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	310, 367, 564
PleI	GAGTC	2 cut(s)	43, 78
PpsI	GAGTC	2 cut(s)	43, 78
PpuMI	RGGWCCY	1 cut(s)	153
PshAI	GACNNNNGTC	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	155, 600, 690
PspPI	GGNCC	2 cut(s)	153, 554
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	2 cut(s)	132, 370
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	165, 844
SatI	GCNGC	3 cut(s)	309, 366, 563
Sau3AI	GATC	4 cut(s)	37, 284, 582, 624
Sau96I	GGNCC	2 cut(s)	153, 554
SchI	GAGTC	2 cut(s)	43, 79
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	642
SfcI	CTRYAG	3 cut(s)	128, 208, 366
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	3 cut(s)	220, 419, 548
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	4 cut(s)	319, 519, 529, 721
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	5 cut(s)	456, 627, 648, 813, 840
TasI	AATT	3 cut(s)	220, 419, 548
TatI	WGTACW	1 cut(s)	716
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	2 cut(s)	165, 844
Tru9I	TTAA	2 cut(s)	165, 844
TscAI	CASTG	2 cut(s)	17, 522
TseFI	GTSAC	2 cut(s)	394, 511
TseI	GCWGC	3 cut(s)	308, 365, 562
Tsp45I	GTSAC	2 cut(s)	394, 511
TspDTI	ATGAA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	17, 522
VpaK11BI	GGWCC	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	2 cut(s)	419, 548
XceI	RCATGY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.