AT3G56870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007970
Physical Location & Seq
Forward (+)
21052434 .. 21055721
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56870.2

Sequence Viewer

Length: 2103 bp
ATGGTGGAGTTAAGAAGTAGCACACACTTGAACTCTCATGTACATTATATCCGAACCATTAAAGACGGATCTATCAAAATAGTGATGAATATGGATGGCAGAAGAAAACCAAAGCTCAAATTTAGACAGTTGGTGGATATATACAATCTTGAAGACAGTCAAGGTGTTGAGTCAATTCCAAGAGTAGTCAGGGATTTGGACAATGGTTCTGATTTTACACAAGGTTCTGAGTCTGAAGATTTTAGCATGACAACATTGGAGATGATTCAGAAACAATGCAAAGAAAGGAAAAGGAAACTTAGAAACTGCAGAGATACTACTACTGAGACATTCTCGAACGTTGAAGTTAAAAAAGAGTATGTGACCCAAGATGAAGGATGTGATATTGAGGAGCCTCTTAGCAGTTGGGATACGAAATTCTCCAAGAGAAGGAAGAAGAAGCAGGAGCGTAAAAAAGCAAAGTGTGGTACTTCTACTTCCTCTCCTCCATCTGTGGAAAAGGTTGATTTGCCGTTGGTGCTCTTTCATGTCAAGCCTGAAGTTTGGGATGATAGCTATTCAGTTTCTGAAGCCATGGATTGTAGTGAAAAGTCAGAATCTCCTATAAATACAGTGTTGGTGGAAGAAATAATGCTTGATTCGTCCAGTGACATGAGGCTGGTTCCATACTGCAGTGCAGAGCCAAATTTTCCCGGAGTGGTAGCCATTGAGGAAGCTTTTGAAGATGCATCAGAAGAGTTTAGCGATGCTGATTTTCAGAATAAGCAAATTGTTTTGTACTCTAGTGTGTCTAGAGAGGAGATGGAATTGGATGTTAATCCACAACATTCAGAATATGAGAACATTGGTTGTGTAAAGAACTTCATTTCTGCTTACACAAGCTCTGGGTGCGAAGAAGAAGATAAAGAGGATGAGGAAAGCAATGATATAAAGGCTAACTTAGATATGAGTGTAACTGGTTTGGAGATTGTGAAGATAGAAGCTCCAGAAATACTTGCTATTGATTACCCCGGTTGTTTGTCCATCATCAATTTTTGTGCAGAAGATTCCGAGATTGTGTGGGAAACTGAAGACATTACTAAGGATAATTTTCCTGAAGCAACTGATATTCTCCAGCTGACCAACTGTTGTAATTCACTGGATAATCTGCAACCAGTTCCTGAAGACAGCACAAGTTCAAAAGAAGAAGATCATTTGACAGAAAGATTACAACAATCTTTATACTCCAAACATGAAGATGAAGCAGGAGACCACAAACTATCACAACTGTATAAGGAACCTGATGAGGTTCAAAAAGTTGCAGAGACTGACAGTATCCAGCAACAACAACCACACCACCAACCAGAAAATCTACTCTCTGGGAGAAAGGCTTTATCTCCCACCTCTCAAGAAAAACTTCGCAAGGCAATGGAGCACCCTGATTCACCTGAGAAAAGGAGTAAAAAATCAAGAGGGAAACTCTACTTCAGTAGCCAAAACTCACATAGGATCCTTAAGGCTCAAGGGCTGGATAACATTGACCGAGTGGAAATCATTCCAAGCTCAAAGCAAGCCATTCAAAAAGCAACTAATAATACGCGGCAAATGAAGTATCAAAGAGCGACACACAAGTTTCCACGTCGAAATACTCAAGCAGCAAAAGCACAGCCTTTTAGCACTGGAGGCACTTCTATACAAGGATGCTCACAGAAAGCTATTGCCTTCTCGCAAGGGCAAATGCGTGATTTCCAAAATGTTGCAGCTAGGCTCACAAAAGAGCTGAAATCGATGAGACAAATCACAAAGAGATGTCTGCAAGCTGAAAGCAACACCTCCAACATGTCTGACTGTAACTTAGATGAGGTGAAAACTGTGATTGGAAATGCAGAAAAAACTGAAGAGAGTTGCAAGAAATGGCTTTCGATCATTGAACGTGACTGTAATCGGTTTTGCAAACTCATGAGTATGGTCAGAGAAGATTCTCCAGCTACTGAGAACATTGTTCATAAGAAAAAGAAGATTAGATTTGCAGATGATGCAGGAGGAGATCTATGCCATGTCAAGGTTTTTGAGATTGATTTGGAATCTGAATCATACGTCATAACCAAAGACTGTAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

700

Amino Acids

79.62

Weight (kDa)

5.23

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1579
AciI CCGC 1 cut(s) 1579
AclI AACGTT 1 cut(s) 339
AclWI GGATC 3 cut(s) 76, 1483, 1496
AcsI RAATTY 4 cut(s) 119, 416, 685, 2097
AcuI CTGAAG 8 cut(s) 255, 558, 588, 1089, 1116, 1182, 1450, 1896
AfaI GTAC 3 cut(s) 42, 469, 779
AfiI CCNNNNNNNGG 2 cut(s) 429, 2041
AflII CTTAAG 1 cut(s) 1493
AflIII ACRYGT 1 cut(s) 1818
AgsI TTSAA 8 cut(s) 31, 152, 344, 722, 1179, 1292, 1559, 1910
AjiI CACGTC 1 cut(s) 1619
Alw21I GWGCWC 2 cut(s) 522, 1416
Alw26I GTCTC 4 cut(s) 320, 1242, 1298, 1765
AlwI GGATC 3 cut(s) 76, 1483, 1496
AlwNI CAGNNNCTG 4 cut(s) 566, 1160, 1307, 1970
ApeKI GCWGC 2 cut(s) 1634, 1739
ApoI RAATTY 4 cut(s) 119, 416, 685, 2097
Asp700I GAANNNNTTC 2 cut(s) 1395, 1533
AsuC2I CCSGG 2 cut(s) 693, 1011
AsuHPI GGTGA 2 cut(s) 1416, 1855
BamHI GGATCC 1 cut(s) 1488
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BbsI GAAGAC 3 cut(s) 159, 1077, 1170
Bbv12I GWGCWC 2 cut(s) 522, 1416
BbvI GCAGC 2 cut(s) 1646, 1751
BccI CCATC 4 cut(s) 89, 496, 796, 1031
BceAI ACGGC 1 cut(s) 496
BciVI GTATCC 2 cut(s) 403, 1325
BcnI CCSGG 2 cut(s) 693, 1011
BcoDI GTCTC 4 cut(s) 320, 1242, 1298, 1765
BfaI CTAG 3 cut(s) 783, 792, 1743
BfmI CTRYAG 2 cut(s) 307, 670
BfrI CTTAAG 1 cut(s) 1493
BfuI GTATCC 2 cut(s) 403, 1325
BglII AGATCT 1 cut(s) 2026
BisI GCNGC 3 cut(s) 1580, 1635, 1740
BlsI GCNGC 3 cut(s) 1581, 1636, 1741
Bme1390I CCNGG 2 cut(s) 693, 1011
BmgBI CACGTC 1 cut(s) 1619
BmiI GGNNCC 4 cut(s) 393, 663, 1278, 1490
BmrFI CCNGG 2 cut(s) 693, 1011
BmsI GCATC 5 cut(s) 715, 736, 737, 1670, 2005
BpiI GAAGAC 3 cut(s) 159, 1077, 1170
BplI GAGNNNNNCTC 4 cut(s) 317, 349, 1443, 1475
BpmI CTGGAG 4 cut(s) 969, 1097, 1680, 1947
BpuEI CTTGAG 3 cut(s) 1371, 1485, 1614
BpuMI CCSGG 2 cut(s) 693, 1011
Bsa29I ATCGAT 1 cut(s) 1766
BsaBI GATNNNNATC 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 1242
BsaJI CCNNGG 2 cut(s) 573, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 2041
Bse1I ACTGG 5 cut(s) 645, 961, 1143, 1154, 1663
Bse3DI GCAATG 2 cut(s) 928, 1413
Bse8I GATNNNNATC 1 cut(s) 816
BseCI ATCGAT 1 cut(s) 1766
BseDI CCNNGG 2 cut(s) 573, 1009
BseGI GGATG 6 cut(s) 100, 383, 553, 817, 916, 1685
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 429, 2041
BseMI GCAATG 2 cut(s) 928, 1413
BseMII CTCAG 4 cut(s) 219, 315, 1419, 1962
BseNI ACTGG 5 cut(s) 645, 961, 1143, 1154, 1663
BseRI GAGGAG 4 cut(s) 404, 474, 812, 2037
BseXI GCAGC 2 cut(s) 1646, 1751
BsgI GTGCAG 2 cut(s) 696, 1059
Bsh1236I CGCG 1 cut(s) 1579
BshVI ATCGAT 1 cut(s) 1766
BsiHKAI GWGCWC 2 cut(s) 522, 1416
BsiSI CCGG 2 cut(s) 693, 1011
BslI CCNNNNNNNGG 2 cut(s) 429, 2041
BsmAI GTCTC 4 cut(s) 320, 1242, 1298, 1765
Bso31I GGTCTC 1 cut(s) 1242
Bsp1286I GDGCHC 2 cut(s) 522, 1416
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 1 cut(s) 1579
BspCNI CTCAG 4 cut(s) 220, 316, 1420, 1963
BspDI ATCGAT 1 cut(s) 1766
BspFNI CGCG 1 cut(s) 1579
BspHI TCATGA 1 cut(s) 1938
BspLI GGNNCC 4 cut(s) 393, 663, 1278, 1490
BspMAI CTGCAG 2 cut(s) 311, 674
BspPI GGATC 3 cut(s) 76, 1483, 1496
BspTI CTTAAG 1 cut(s) 1493
BspTNI GGTCTC 1 cut(s) 1242
BsrDI GCAATG 2 cut(s) 928, 1413
BsrGI TGTACA 1 cut(s) 40
BsrI ACTGG 5 cut(s) 645, 961, 1143, 1154, 1663
BssECI CCNNGG 2 cut(s) 573, 1009
BssMI GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
BssT1I CCWWGG 1 cut(s) 573
Bst6I CTCTTC 2 cut(s) 729, 1872
BstAFI CTTAAG 1 cut(s) 1493
BstAPI GCANNNNNTGC 1 cut(s) 2015
BstAUI TGTACA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 1551, 1797
BstDEI CTNAG 9 cut(s) 228, 299, 324, 398, 940, 1080, 1428, 1834, 1971
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 6 cut(s) 100, 383, 553, 817, 916, 1685
BstFNI CGCG 1 cut(s) 1579
BstKTI GATC 5 cut(s) 71, 1192, 1491, 1905, 2029
BstMAI GTCTC 4 cut(s) 320, 1242, 1298, 1765
BstMBI GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
BstMWI GCNNNNNNNGC 5 cut(s) 517, 888, 1640, 1662, 2015
BstNSI RCATGY 1 cut(s) 1822
BstSCI CCNGG 2 cut(s) 691, 1009
BstSFI CTRYAG 2 cut(s) 307, 670
BstUI CGCG 1 cut(s) 1579
BstV1I GCAGC 2 cut(s) 1646, 1751
BstV2I GAAGAC 3 cut(s) 159, 1077, 1170
BstX2I RGATCY 3 cut(s) 68, 1488, 2026
BstYI RGATCY 3 cut(s) 68, 1488, 2026
Bsu15I ATCGAT 1 cut(s) 1766
BsuI GTATCC 2 cut(s) 403, 1325
BsuTUI ATCGAT 1 cut(s) 1766
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 759
BtrI CACGTC 1 cut(s) 1619
BtsCI GGATG 6 cut(s) 100, 383, 553, 817, 916, 1685
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 5 cut(s) 618, 652, 679, 1136, 1656
Cac8I GCNNGC 2 cut(s) 1551, 1797
CaiI CAGNNNCTG 4 cut(s) 566, 1160, 1307, 1970
CciI TCATGA 1 cut(s) 1938
ClaI ATCGAT 1 cut(s) 1766
Csp6I GTAC 3 cut(s) 41, 468, 778
CviAII CATG 9 cut(s) 38, 247, 527, 574, 652, 1232, 1819, 1939, 2036
CviQI GTAC 3 cut(s) 41, 468, 778
DdeI CTNAG 9 cut(s) 228, 299, 324, 398, 940, 1080, 1428, 1834, 1971
DpnI GATC 5 cut(s) 70, 1191, 1490, 1904, 2028
DpnII GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
Eam1104I CTCTTC 2 cut(s) 729, 1872
EarI CTCTTC 2 cut(s) 729, 1872
Eco130I CCWWGG 1 cut(s) 573
Eco31I GGTCTC 1 cut(s) 1242
Eco57I CTGAAG 8 cut(s) 255, 558, 588, 1089, 1116, 1182, 1450, 1896
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 9 cut(s) 41, 250, 530, 577, 655, 1235, 1822, 1942, 2039
FalI AAGNNNNNCTT 4 cut(s) 923, 955, 1380, 1412
FatI CATG 9 cut(s) 37, 246, 526, 573, 651, 1231, 1818, 1938, 2035
Fnu4HI GCNGC 3 cut(s) 1580, 1635, 1740
FokI GGATG 6 cut(s) 107, 390, 560, 824, 923, 1692
Fsp4HI GCNGC 3 cut(s) 1580, 1635, 1740
FspBI CTAG 3 cut(s) 783, 792, 1743
GluI GCNGC 3 cut(s) 1580, 1635, 1740
GsuI CTGGAG 4 cut(s) 969, 1097, 1680, 1947
HapII CCGG 2 cut(s) 693, 1011
Hin1II CATG 9 cut(s) 41, 250, 530, 577, 655, 1235, 1822, 1942, 2039
HindIII AAGCTT 1 cut(s) 714
HpaII CCGG 2 cut(s) 693, 1011
HphI GGTGA 2 cut(s) 1416, 1855
Hpy188III TCNNGA 9 cut(s) 149, 334, 792, 986, 1094, 1160, 1388, 1449, 1939
Hpy99I CGWCG 1 cut(s) 1623
HpyAV CCTTC 3 cut(s) 368, 423, 1711
HpyCH4IV ACGT 4 cut(s) 339, 1618, 1912, 2076
HpyF10VI GCNNNNNNNGC 5 cut(s) 517, 888, 1640, 1662, 2015
HpyF3I CTNAG 9 cut(s) 228, 299, 324, 398, 940, 1080, 1428, 1834, 1971
HpySE526I ACGT 4 cut(s) 339, 1618, 1912, 2076
Hsp92II CATG 9 cut(s) 41, 250, 530, 577, 655, 1235, 1822, 1942, 2039
Kzo9I GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
LmnI GCTCC 4 cut(s) 391, 445, 988, 1411
Lsp1109I GCAGC 2 cut(s) 1646, 1751
LweI GCATC 5 cut(s) 715, 736, 737, 1670, 2005
MaeI CTAG 3 cut(s) 783, 792, 1743
MaeII ACGT 4 cut(s) 339, 1618, 1912, 2076
MaeIII GTNAC 5 cut(s) 361, 647, 952, 1829, 1913
MalI GATC 5 cut(s) 70, 1191, 1490, 1904, 2028
MboI GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
MflI RGATCY 3 cut(s) 68, 1488, 2026
MhlI GDGCHC 2 cut(s) 522, 1416
MlyI GAGTC 2 cut(s) 179, 239
MmeI TCCRAC 1 cut(s) 1839
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 2 cut(s) 1395, 1533
MseI TTAA 5 cut(s) 11, 60, 348, 816, 1494
MslI CAYNNNNRTG 2 cut(s) 1236, 1943
MspA1I CMGCKG 1 cut(s) 1117
MspCI CTTAAG 1 cut(s) 1493
MspI CCGG 2 cut(s) 693, 1011
MspR9I CCNGG 2 cut(s) 693, 1011
MvnI CGCG 1 cut(s) 1579
MwoI GCNNNNNNNGC 5 cut(s) 517, 888, 1640, 1662, 2015
NciI CCSGG 2 cut(s) 693, 1011
NcoI CCATGG 1 cut(s) 573
NdeII GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
NlaIII CATG 9 cut(s) 41, 250, 530, 577, 655, 1235, 1822, 1942, 2039
NlaIV GGNNCC 4 cut(s) 393, 663, 1278, 1490
NmuCI GTSAC 3 cut(s) 361, 647, 1913
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 1 cut(s) 1822
PagI TCATGA 1 cut(s) 1938
PciI ACATGT 1 cut(s) 1818
PdmI GAANNNNTTC 2 cut(s) 1395, 1533
PfeI GAWTC 8 cut(s) 265, 596, 638, 1046, 1421, 1958, 2063, 2069
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 3 cut(s) 1581, 1636, 1741
PleI GAGTC 2 cut(s) 178, 238
PpsI GAGTC 2 cut(s) 178, 238
PscI ACATGT 1 cut(s) 1818
Psp1406I AACGTT 1 cut(s) 339
PspN4I GGNNCC 4 cut(s) 393, 663, 1278, 1490
PstI CTGCAG 2 cut(s) 311, 674
PstNI CAGNNNCTG 4 cut(s) 566, 1160, 1307, 1970
PsuI RGATCY 3 cut(s) 68, 1488, 2026
PvuII CAGCTG 1 cut(s) 1117
RsaI GTAC 3 cut(s) 42, 469, 779
RsaNI GTAC 3 cut(s) 41, 468, 778
RseI CAYNNNNRTG 2 cut(s) 1236, 1943
SaqAI TTAA 5 cut(s) 11, 60, 348, 816, 1494
SatI GCNGC 3 cut(s) 1580, 1635, 1740
Sau3AI GATC 5 cut(s) 68, 1189, 1488, 1902, 2026
SchI GAGTC 2 cut(s) 179, 239
ScrFI CCNGG 2 cut(s) 693, 1011
SduI GDGCHC 2 cut(s) 522, 1416
SfaNI GCATC 5 cut(s) 715, 736, 737, 1670, 2005
SfcI CTRYAG 2 cut(s) 307, 670
SmiMI CAYNNNNRTG 2 cut(s) 1236, 1943
SmlI CTYRAG 4 cut(s) 1386, 1493, 1500, 1629
SmoI CTYRAG 4 cut(s) 1386, 1493, 1500, 1629
SsiI CCGC 1 cut(s) 1579
SspMI CTAG 3 cut(s) 783, 792, 1743
StyD4I CCNGG 2 cut(s) 691, 1009
StyI CCWWGG 1 cut(s) 573
TaiI ACGT 4 cut(s) 342, 1621, 1915, 2079
TaqI TCGA 4 cut(s) 335, 1621, 1766, 1901
TaqII GACCGA 1 cut(s) 1536
TatI WGTACW 2 cut(s) 40, 777
TauI GCSGC 1 cut(s) 1582
TfiI GAWTC 8 cut(s) 265, 596, 638, 1046, 1421, 1958, 2063, 2069
Tru1I TTAA 5 cut(s) 11, 60, 348, 816, 1494
Tru9I TTAA 5 cut(s) 11, 60, 348, 816, 1494
TscAI CASTG 5 cut(s) 618, 652, 679, 1143, 1663
TseFI GTSAC 3 cut(s) 361, 647, 1913
TseI GCWGC 2 cut(s) 1634, 1739
Tsp45I GTSAC 3 cut(s) 361, 647, 1913
TspDTI ATGAA 8 cut(s) 101, 387, 515, 853, 1248, 1254, 1601, 1973
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 5 cut(s) 618, 652, 679, 1143, 1663
Vha464I CTTAAG 1 cut(s) 1493
XapI RAATTY 4 cut(s) 119, 416, 685, 2097
XbaI TCTAGA 1 cut(s) 791
XceI RCATGY 1 cut(s) 1822
XmnI GAANNNNTTC 2 cut(s) 1395, 1533
XspI CTAG 3 cut(s) 783, 792, 1743
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.