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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56870 AT3G56870 |
| fragaria_vesca | FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 |
| malus_domestica | MD08G1033800.v1.1 MD15G1030400.v1.1 |
| prunus_persica | Prupe.1G381200_v2.0.a1 |
| pyrus_communis | pycom08g02700 pycom15g02670 |
| rosa_chinensis | RchiOBHm_Chr6g0300761 |
| rosa_laevigata | RLG00000011304 |
| rosa_multiflora | Rmu_co8197360.1_g000001 Rmu_sc0003626.1_g000001 Rmu_sc0026201.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00167440 |
| rosa_rugosa | Rorug06G0298900 Rorug06G0299000 |
| rosa_samantha | Rh6AG411800 Rh6BG419000 Rh6CG426500 Rh6DG411900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 716 |
| AccB1I | GGYRCC | 3 cut(s) | 716, 760, 1147 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1696 |
| AccIII | TCCGGA | 1 cut(s) | 1079 |
| AciI | CCGC | 6 cut(s) | 84, 753, 1295, 1815, 2482, 2728 |
| AclI | AACGTT | 2 cut(s) | 385, 2613 |
| AclWI | GGATC | 4 cut(s) | 199, 1397, 1454, 2727 |
| AcsI | RAATTY | 2 cut(s) | 1585, 2180 |
| AcuI | CTGAAG | 3 cut(s) | 294, 365, 2457 |
| AcyI | GRCGYC | 1 cut(s) | 2595 |
| AdeI | CACNNNGTG | 1 cut(s) | 2298 |
| AfaI | GTAC | 4 cut(s) | 96, 718, 2137, 2302 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 710, 1079, 1169, 1437, 1696, 1709, 2356 |
| AflII | CTTAAG | 1 cut(s) | 545 |
| AhlI | ACTAGT | 1 cut(s) | 1951 |
| AjiI | CACGTC | 1 cut(s) | 2704 |
| AjnI | CCWGG | 3 cut(s) | 36, 527, 1650 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 684, 716 |
| Alw26I | GTCTC | 8 cut(s) | 353, 650, 797, 1184, 1313, 1500, 1640, 1911 |
| AlwI | GGATC | 4 cut(s) | 199, 1397, 1454, 2727 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 43, 788, 917, 1046, 1175, 1808 |
| Aor13HI | TCCGGA | 1 cut(s) | 1079 |
| AoxI | GGCC | 6 cut(s) | 525, 890, 1062, 1780, 2055, 2156 |
| ApeKI | GCWGC | 6 cut(s) | 785, 914, 1043, 1298, 1984, 2273 |
| ApoI | RAATTY | 2 cut(s) | 1585, 2180 |
| AseI | ATTAAT | 3 cut(s) | 1110, 1707, 2229 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 385, 556, 1275, 1717, 1918, 2088, 2317 |
| Asp718I | GGTACC | 1 cut(s) | 716 |
| AspLEI | GCGC | 3 cut(s) | 1576, 2197, 2330 |
| AspS9I | GGNCC | 6 cut(s) | 525, 579, 890, 1700, 1781, 2156 |
| AsuC2I | CCSGG | 1 cut(s) | 2094 |
| AsuHPI | GGTGA | 9 cut(s) | 161, 233, 344, 420, 1462, 1532, 1688, 1746, 2019 |
| AvaII | GGWCC | 2 cut(s) | 579, 1700 |
| BanI | GGYRCC | 3 cut(s) | 716, 760, 1147 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2412, 2444 |
| BbsI | GAAGAC | 5 cut(s) | 853, 982, 1111, 1240, 1369 |
| BbvCI | CCTCAGC | 1 cut(s) | 1851 |
| BbvI | GCAGC | 6 cut(s) | 772, 901, 1030, 1310, 1996, 2285 |
| BccI | CCATC | 3 cut(s) | 287, 317, 2479 |
| BceAI | ACGGC | 1 cut(s) | 2608 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2512, 2546 |
| BciT130I | CCWGG | 3 cut(s) | 38, 529, 1652 |
| BclI | TGATCA | 2 cut(s) | 60, 2161 |
| BcnI | CCSGG | 1 cut(s) | 2094 |
| BcoDI | GTCTC | 8 cut(s) | 353, 650, 797, 1184, 1313, 1500, 1640, 1911 |
| BcuI | ACTAGT | 1 cut(s) | 1951 |
| BfaI | CTAG | 4 cut(s) | 1788, 1910, 1952, 1971 |
| BfmI | CTRYAG | 2 cut(s) | 2271, 2554 |
| BfoI | RGCGCY | 1 cut(s) | 2331 |
| BfrI | CTTAAG | 1 cut(s) | 545 |
| BglII | AGATCT | 1 cut(s) | 1579 |
| BisI | GCNGC | 7 cut(s) | 786, 915, 1044, 1296, 1299, 1985, 2274 |
| BlsI | GCNGC | 7 cut(s) | 787, 916, 1045, 1297, 1300, 1986, 2275 |
| BmcAI | AGTACT | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 4 cut(s) | 38, 529, 1652, 2094 |
| Bme18I | GGWCC | 2 cut(s) | 579, 1700 |
| BmgBI | CACGTC | 1 cut(s) | 2704 |
| BmgT120I | GGNCC | 6 cut(s) | 525, 579, 890, 1700, 1781, 2156 |
| BmiI | GGNNCC | 7 cut(s) | 666, 718, 762, 891, 1149, 1278, 1701 |
| BmrFI | CCNGG | 4 cut(s) | 38, 529, 1652, 2094 |
| BmsI | GCATC | 8 cut(s) | 127, 647, 1008, 1918, 2256, 2343, 2525, 2590 |
| BpiI | GAAGAC | 5 cut(s) | 853, 982, 1111, 1240, 1369 |
| BpmI | CTGGAG | 1 cut(s) | 1017 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1851 |
| BpuMI | CCSGG | 1 cut(s) | 2094 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaHI | GRCGYC | 1 cut(s) | 2595 |
| BsaI | GGTCTC | 4 cut(s) | 650, 1184, 1313, 1640 |
| BsaJI | CCNNGG | 5 cut(s) | 1059, 1650, 1845, 2152, 2292 |
| BsaWI | WCCGGW | 1 cut(s) | 1079 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1957, 1987 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 710, 1079, 1169, 1437, 1696, 1709, 2356 |
| Bse118I | RCCGGY | 1 cut(s) | 2559 |
| Bse1I | ACTGG | 4 cut(s) | 92, 1034, 1690, 1773 |
| Bse3DI | GCAATG | 2 cut(s) | 304, 2331 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseAI | TCCGGA | 1 cut(s) | 1079 |
| BseBI | CCWGG | 3 cut(s) | 38, 529, 1652 |
| BseDI | CCNNGG | 5 cut(s) | 1059, 1650, 1845, 2152, 2292 |
| BseGI | GGATG | 6 cut(s) | 328, 478, 1526, 1624, 2247, 2490 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 710, 1079, 1169, 1437, 1696, 1709, 2356 |
| BseMI | GCAATG | 2 cut(s) | 304, 2331 |
| BseNI | ACTGG | 4 cut(s) | 92, 1034, 1690, 1773 |
| BseRI | GAGGAG | 2 cut(s) | 1868, 1871 |
| BseXI | GCAGC | 6 cut(s) | 772, 901, 1030, 1310, 1996, 2285 |
| BseYI | CCCAGC | 2 cut(s) | 302, 2663 |
| BsgI | GTGCAG | 1 cut(s) | 1911 |
| BshFI | GGCC | 6 cut(s) | 527, 892, 1064, 1782, 2057, 2158 |
| BshNI | GGYRCC | 3 cut(s) | 716, 760, 1147 |
| BsiSI | CCGG | 5 cut(s) | 605, 1080, 1571, 2094, 2560 |
| BslFI | GGGAC | 4 cut(s) | 319, 746, 1713, 2564 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 710, 1079, 1169, 1437, 1696, 1709, 2356 |
| BsmAI | GTCTC | 8 cut(s) | 353, 650, 797, 1184, 1313, 1500, 1640, 1911 |
| BsmFI | GGGAC | 4 cut(s) | 319, 746, 1713, 2564 |
| BsmI | GAATGC | 1 cut(s) | 2336 |
| BsnI | GGCC | 6 cut(s) | 527, 892, 1064, 1782, 2057, 2158 |
| Bso31I | GGTCTC | 4 cut(s) | 650, 1184, 1313, 1640 |
| Bsp13I | TCCGGA | 1 cut(s) | 1079 |
| Bsp19I | CCATGG | 1 cut(s) | 1845 |
| BspACI | CCGC | 6 cut(s) | 84, 753, 1295, 1815, 2482, 2728 |
| BspANI | GGCC | 6 cut(s) | 527, 892, 1064, 1782, 2057, 2158 |
| BspEI | TCCGGA | 1 cut(s) | 1079 |
| BspHI | TCATGA | 1 cut(s) | 2574 |
| BspLI | GGNNCC | 7 cut(s) | 666, 718, 762, 891, 1149, 1278, 1701 |
| BspMAI | CTGCAG | 1 cut(s) | 2275 |
| BspPI | GGATC | 4 cut(s) | 199, 1397, 1454, 2727 |
| BspT107I | GGYRCC | 3 cut(s) | 716, 760, 1147 |
| BspTI | CTTAAG | 1 cut(s) | 545 |
| BspTNI | GGTCTC | 4 cut(s) | 650, 1184, 1313, 1640 |
| BsrDI | GCAATG | 2 cut(s) | 304, 2331 |
| BsrFI | RCCGGY | 1 cut(s) | 2559 |
| BsrI | ACTGG | 4 cut(s) | 92, 1034, 1690, 1773 |
| BssAI | RCCGGY | 1 cut(s) | 2559 |
| BssECI | CCNNGG | 5 cut(s) | 1059, 1650, 1845, 2152, 2292 |
| BssNI | GRCGYC | 1 cut(s) | 2595 |
| BssT1I | CCWWGG | 3 cut(s) | 1059, 1845, 2152 |
| Bst2UI | CCWGG | 3 cut(s) | 38, 529, 1652 |
| Bst4CI | ACNGT | 7 cut(s) | 206, 244, 259, 2049, 2081, 2207, 2555 |
| Bst6I | CTCTTC | 3 cut(s) | 462, 1691, 1998 |
| BstACI | GRCGYC | 1 cut(s) | 2595 |
| BstAFI | CTTAAG | 1 cut(s) | 545 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 244 |
| BstC8I | GCNNGC | 4 cut(s) | 82, 236, 1780, 1878 |
| BstDSI | CCRYGG | 2 cut(s) | 1845, 2292 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| BstF5I | GGATG | 6 cut(s) | 328, 478, 1526, 1624, 2247, 2490 |
| BstH2I | RGCGCY | 1 cut(s) | 2331 |
| BstHHI | GCGC | 3 cut(s) | 1576, 2197, 2330 |
| BstMAI | GTCTC | 8 cut(s) | 353, 650, 797, 1184, 1313, 1500, 1640, 1911 |
| BstNI | CCWGG | 3 cut(s) | 38, 529, 1652 |
| BstNSI | RCATGY | 1 cut(s) | 366 |
| BstSCI | CCNGG | 4 cut(s) | 36, 527, 1650, 2092 |
| BstSFI | CTRYAG | 2 cut(s) | 2271, 2554 |
| BstV1I | GCAGC | 6 cut(s) | 772, 901, 1030, 1310, 1996, 2285 |
| BstV2I | GAAGAC | 5 cut(s) | 853, 982, 1111, 1240, 1369 |
| BstX2I | RGATCY | 2 cut(s) | 1402, 1579 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2243 |
| BstYI | RGATCY | 2 cut(s) | 1402, 1579 |
| BsuRI | GGCC | 6 cut(s) | 527, 892, 1064, 1782, 2057, 2158 |
| BtgI | CCRYGG | 2 cut(s) | 1845, 2292 |
| BtrI | CACGTC | 1 cut(s) | 2704 |
| BtsCI | GGATG | 6 cut(s) | 328, 478, 1526, 1624, 2247, 2490 |
| BtsI | GCAGTG | 3 cut(s) | 295, 891, 1020 |
| BtsIMutI | CAGTG | 8 cut(s) | 295, 341, 891, 1020, 1041, 1697, 1780, 2086 |
| Cac8I | GCNNGC | 4 cut(s) | 82, 236, 1780, 1878 |
| CaiI | CAGNNNCTG | 6 cut(s) | 43, 788, 917, 1046, 1175, 1808 |
| CciI | TCATGA | 1 cut(s) | 2574 |
| CfoI | GCGC | 3 cut(s) | 1576, 2197, 2330 |
| Cfr10I | RCCGGY | 1 cut(s) | 2559 |
| Cfr13I | GGNCC | 6 cut(s) | 525, 579, 890, 1700, 1781, 2156 |
| CseI | GACGC | 2 cut(s) | 1976, 2584 |
| Csp6I | GTAC | 4 cut(s) | 95, 717, 2136, 2301 |
| CviQI | GTAC | 4 cut(s) | 95, 717, 2136, 2301 |
| DraI | TTTAAA | 1 cut(s) | 1977 |
| DraIII | CACNNNGTG | 1 cut(s) | 2298 |
| Eam1104I | CTCTTC | 3 cut(s) | 462, 1691, 1998 |
| EarI | CTCTTC | 3 cut(s) | 462, 1691, 1998 |
| Eco130I | CCWWGG | 3 cut(s) | 1059, 1845, 2152 |
| Eco31I | GGTCTC | 4 cut(s) | 650, 1184, 1313, 1640 |
| Eco32I | GATATC | 1 cut(s) | 688 |
| Eco47I | GGWCC | 2 cut(s) | 579, 1700 |
| Eco57I | CTGAAG | 3 cut(s) | 294, 365, 2457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| EcoO109I | RGGNCCY | 3 cut(s) | 890, 1700, 2156 |
| EcoRII | CCWGG | 3 cut(s) | 36, 527, 1650 |
| EcoRV | GATATC | 1 cut(s) | 688 |
| EcoT14I | CCWWGG | 3 cut(s) | 1059, 1845, 2152 |
| EcoT22I | ATGCAT | 1 cut(s) | 1599 |
| ErhI | CCWWGG | 3 cut(s) | 1059, 1845, 2152 |
| FaqI | GGGAC | 4 cut(s) | 319, 746, 1713, 2564 |
| FauI | CCCGC | 1 cut(s) | 2721 |
| FauNDI | CATATG | 1 cut(s) | 598 |
| FbaI | TGATCA | 2 cut(s) | 60, 2161 |
| Fnu4HI | GCNGC | 7 cut(s) | 786, 915, 1044, 1296, 1299, 1985, 2274 |
| FokI | GGATG | 6 cut(s) | 335, 485, 1533, 1631, 2234, 2497 |
| Fsp4HI | GCNGC | 7 cut(s) | 786, 915, 1044, 1296, 1299, 1985, 2274 |
| FspBI | CTAG | 4 cut(s) | 1788, 1910, 1952, 1971 |
| GlaI | GCGC | 3 cut(s) | 1575, 2196, 2329 |
| GluI | GCNGC | 7 cut(s) | 786, 915, 1044, 1296, 1299, 1985, 2274 |
| GsaI | CCCAGC | 2 cut(s) | 306, 2667 |
| GsuI | CTGGAG | 1 cut(s) | 1017 |
| HaeII | RGCGCY | 1 cut(s) | 2331 |
| HaeIII | GGCC | 6 cut(s) | 527, 892, 1064, 1782, 2057, 2158 |
| HapII | CCGG | 5 cut(s) | 605, 1080, 1571, 2094, 2560 |
| HgaI | GACGC | 2 cut(s) | 1976, 2584 |
| HhaI | GCGC | 3 cut(s) | 1576, 2197, 2330 |
| Hin1I | GRCGYC | 1 cut(s) | 2595 |
| Hin6I | GCGC | 3 cut(s) | 1574, 2195, 2328 |
| HinP1I | GCGC | 3 cut(s) | 1574, 2195, 2328 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HindIII | AAGCTT | 2 cut(s) | 276, 542 |
| HpaII | CCGG | 5 cut(s) | 605, 1080, 1571, 2094, 2560 |
| HphI | GGTGA | 9 cut(s) | 161, 233, 344, 420, 1462, 1532, 1688, 1746, 2019 |
| Hpy166II | GTNNAC | 6 cut(s) | 202, 582, 799, 1470, 1540, 2301 |
| Hpy188III | TCNNGA | 9 cut(s) | 64, 626, 668, 951, 1080, 1463, 2170, 2386, 2575 |
| Hpy8I | GTNNAC | 6 cut(s) | 202, 582, 799, 1470, 1540, 2301 |
| Hpy99I | CGWCG | 1 cut(s) | 2600 |
| HpyAV | CCTTC | 5 cut(s) | 511, 992, 1511, 2268, 2401 |
| HpyCH4III | ACNGT | 7 cut(s) | 206, 244, 259, 2049, 2081, 2207, 2555 |
| HpyCH4IV | ACGT | 5 cut(s) | 385, 392, 2499, 2613, 2703 |
| HpySE526I | ACGT | 5 cut(s) | 385, 392, 2499, 2613, 2703 |
| Hsp92I | GRCGYC | 1 cut(s) | 2595 |
| HspAI | GCGC | 3 cut(s) | 1574, 2195, 2328 |
| Kpn2I | TCCGGA | 1 cut(s) | 1079 |
| KpnI | GGTACC | 1 cut(s) | 720 |
| Ksp22I | TGATCA | 2 cut(s) | 60, 2161 |
| Lsp1109I | GCAGC | 6 cut(s) | 772, 901, 1030, 1310, 1996, 2285 |
| LweI | GCATC | 8 cut(s) | 127, 647, 1008, 1918, 2256, 2343, 2525, 2590 |
| MaeI | CTAG | 4 cut(s) | 1788, 1910, 1952, 1971 |
| MaeII | ACGT | 5 cut(s) | 385, 392, 2499, 2613, 2703 |
| MfeI | CAATTG | 1 cut(s) | 2067 |
| MflI | RGATCY | 2 cut(s) | 1402, 1579 |
| MlyI | GAGTC | 5 cut(s) | 61, 461, 1793, 1975, 2157 |
| MmeI | TCCRAC | 1 cut(s) | 2033 |
| Mph1103I | ATGCAT | 1 cut(s) | 1599 |
| MroI | TCCGGA | 1 cut(s) | 1079 |
| MroXI | GAANNNNTTC | 7 cut(s) | 385, 556, 1275, 1717, 1918, 2088, 2317 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2241, 2579 |
| MspA1I | CMGCKG | 4 cut(s) | 785, 914, 1043, 1301 |
| MspCI | CTTAAG | 1 cut(s) | 545 |
| MspI | CCGG | 5 cut(s) | 605, 1080, 1571, 2094, 2560 |
| MspR9I | CCNGG | 4 cut(s) | 38, 529, 1652, 2094 |
| MssI | GTTTAAAC | 1 cut(s) | 1977 |
| MunI | CAATTG | 1 cut(s) | 2067 |
| Mva1269I | GAATGC | 1 cut(s) | 2336 |
| MvaI | CCWGG | 3 cut(s) | 38, 529, 1652 |
| NciI | CCSGG | 1 cut(s) | 2094 |
| NcoI | CCATGG | 1 cut(s) | 1845 |
| NdeI | CATATG | 1 cut(s) | 598 |
| NlaIV | GGNNCC | 7 cut(s) | 666, 718, 762, 891, 1149, 1278, 1701 |
| NmeAIII | GCCGAG | 1 cut(s) | 1090 |
| NmuCI | GTSAC | 3 cut(s) | 453, 1036, 1796 |
| NsiI | ATGCAT | 1 cut(s) | 1599 |
| NspI | RCATGY | 1 cut(s) | 366 |
| PagI | TCATGA | 1 cut(s) | 2574 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2384 |
| PctI | GAATGC | 1 cut(s) | 2336 |
| PdmI | GAANNNNTTC | 7 cut(s) | 385, 556, 1275, 1717, 1918, 2088, 2317 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1696 |
| PkrI | GCNGC | 7 cut(s) | 787, 916, 1045, 1297, 1300, 1986, 2275 |
| PleI | GAGTC | 5 cut(s) | 61, 460, 1793, 1974, 2156 |
| PmeI | GTTTAAAC | 1 cut(s) | 1977 |
| PpsI | GAGTC | 5 cut(s) | 61, 460, 1793, 1974, 2156 |
| PpuMI | RGGWCCY | 1 cut(s) | 1700 |
| PshBI | ATTAAT | 3 cut(s) | 1110, 1707, 2229 |
| Psp1406I | AACGTT | 2 cut(s) | 385, 2613 |
| Psp5II | RGGWCCY | 1 cut(s) | 1700 |
| Psp6I | CCWGG | 3 cut(s) | 36, 527, 1650 |
| PspFI | CCCAGC | 2 cut(s) | 302, 2663 |
| PspGI | CCWGG | 3 cut(s) | 36, 527, 1650 |
| PspN4I | GGNNCC | 7 cut(s) | 666, 718, 762, 891, 1149, 1278, 1701 |
| PspPI | GGNCC | 6 cut(s) | 525, 579, 890, 1700, 1781, 2156 |
| PspPPI | RGGWCCY | 1 cut(s) | 1700 |
| PstI | CTGCAG | 1 cut(s) | 2275 |
| PstNI | CAGNNNCTG | 6 cut(s) | 43, 788, 917, 1046, 1175, 1808 |
| PsuI | RGATCY | 2 cut(s) | 1402, 1579 |
| PvuII | CAGCTG | 4 cut(s) | 785, 914, 1043, 1301 |
| RsaI | GTAC | 4 cut(s) | 96, 718, 2137, 2302 |
| RsaNI | GTAC | 4 cut(s) | 95, 717, 2136, 2301 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2241, 2579 |
| SatI | GCNGC | 7 cut(s) | 786, 915, 1044, 1296, 1299, 1985, 2274 |
| Sau96I | GGNCC | 6 cut(s) | 525, 579, 890, 1700, 1781, 2156 |
| ScaI | AGTACT | 1 cut(s) | 96 |
| SchI | GAGTC | 5 cut(s) | 61, 461, 1793, 1975, 2157 |
| ScrFI | CCNGG | 4 cut(s) | 38, 529, 1652, 2094 |
| SfaNI | GCATC | 8 cut(s) | 127, 647, 1008, 1918, 2256, 2343, 2525, 2590 |
| SfcI | CTRYAG | 2 cut(s) | 2271, 2554 |
| SinI | GGWCC | 2 cut(s) | 579, 1700 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2241, 2579 |
| SmlI | CTYRAG | 1 cut(s) | 545 |
| SmoI | CTYRAG | 1 cut(s) | 545 |
| SpeI | ACTAGT | 1 cut(s) | 1951 |
| SsiI | CCGC | 6 cut(s) | 84, 753, 1295, 1815, 2482, 2728 |
| SspI | AATATT | 2 cut(s) | 1606, 2227 |
| SspMI | CTAG | 4 cut(s) | 1788, 1910, 1952, 1971 |
| StyD4I | CCNGG | 4 cut(s) | 36, 527, 1650, 2092 |
| StyI | CCWWGG | 3 cut(s) | 1059, 1845, 2152 |
| TaaI | ACNGT | 7 cut(s) | 206, 244, 259, 2049, 2081, 2207, 2555 |
| TaiI | ACGT | 5 cut(s) | 388, 395, 2502, 2616, 2706 |
| TaqI | TCGA | 5 cut(s) | 512, 587, 625, 1657, 2598 |
| TaqII | GACCGA | 2 cut(s) | 1208, 1337 |
| TatI | WGTACW | 2 cut(s) | 94, 2300 |
| TauI | GCSGC | 1 cut(s) | 1298 |
| TscAI | CASTG | 8 cut(s) | 295, 348, 891, 1020, 1041, 1697, 1780, 2086 |
| TseFI | GTSAC | 3 cut(s) | 453, 1036, 1796 |
| TseI | GCWGC | 6 cut(s) | 785, 914, 1043, 1298, 1984, 2273 |
| Tsp45I | GTSAC | 3 cut(s) | 453, 1036, 1796 |
| TspGWI | ACGGA | 1 cut(s) | 1544 |
| TspRI | CASTG | 8 cut(s) | 295, 348, 891, 1020, 1041, 1697, 1780, 2086 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1696 |
| Vha464I | CTTAAG | 1 cut(s) | 545 |
| VpaK11BI | GGWCC | 2 cut(s) | 579, 1700 |
| VspI | ATTAAT | 3 cut(s) | 1110, 1707, 2229 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| XapI | RAATTY | 2 cut(s) | 1585, 2180 |
| XceI | RCATGY | 1 cut(s) | 366 |
| XmnI | GAANNNNTTC | 7 cut(s) | 385, 556, 1275, 1717, 1918, 2088, 2317 |
| XspI | CTAG | 4 cut(s) | 1788, 1910, 1952, 1971 |
| ZrmI | AGTACT | 1 cut(s) | 96 |
| Zsp2I | ATGCAT | 1 cut(s) | 1599 |