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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G56870 AT3G56870 |
| fragaria_vesca | FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 |
| malus_domestica | MD08G1033800.v1.1 MD15G1030400.v1.1 |
| prunus_persica | Prupe.1G381200_v2.0.a1 |
| pyrus_communis | pycom08g02700 pycom15g02670 |
| rosa_chinensis | RchiOBHm_Chr6g0300761 |
| rosa_laevigata | RLG00000011304 |
| rosa_multiflora | Rmu_co8197360.1_g000001 Rmu_sc0003626.1_g000001 Rmu_sc0026201.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00167440 |
| rosa_rugosa | Rorug06G0298900 Rorug06G0299000 |
| rosa_samantha | Rh6AG411800 Rh6BG419000 Rh6CG426500 Rh6DG411900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1795 |
| AciI | CCGC | 3 cut(s) | 767, 1793, 1928 |
| AclI | AACGTT | 3 cut(s) | 388, 1382, 2124 |
| AclWI | GGATC | 2 cut(s) | 962, 1430 |
| AcsI | RAATTY | 4 cut(s) | 101, 1720, 2189, 2246 |
| AcuI | CTGAAG | 2 cut(s) | 368, 690 |
| AfaI | GTAC | 3 cut(s) | 229, 241, 890 |
| AfeI | AGCGCT | 1 cut(s) | 1285 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 831, 945 |
| AgeI | ACCGGT | 2 cut(s) | 58, 2070 |
| AgsI | TTSAA | 8 cut(s) | 106, 393, 409, 422, 1067, 1277, 1877, 2024 |
| AhlI | ACTAGT | 1 cut(s) | 1459 |
| AjnI | CCWGG | 2 cut(s) | 824, 1158 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 78, 110 |
| Alw26I | GTCTC | 7 cut(s) | 356, 574, 585, 626, 797, 1148, 1419 |
| AlwI | GGATC | 2 cut(s) | 962, 1430 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 812 |
| Aor51HI | AGCGCT | 1 cut(s) | 1285 |
| AoxI | GGCC | 2 cut(s) | 89, 1675 |
| ApeKI | GCWGC | 7 cut(s) | 429, 809, 1337, 1340, 1489, 1784, 1787 |
| ApoI | RAATTY | 4 cut(s) | 101, 1720, 2189, 2246 |
| AseI | ATTAAT | 1 cut(s) | 1215 |
| AsiGI | ACCGGT | 2 cut(s) | 58, 2070 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 388 |
| AspLEI | GCGC | 1 cut(s) | 1286 |
| AspS9I | GGNCC | 3 cut(s) | 1162, 1208, 1676 |
| AsuC2I | CCSGG | 2 cut(s) | 1419, 2220 |
| AsuHPI | GGTGA | 3 cut(s) | 161, 1040, 1527 |
| AsuNHI | GCTAGC | 1 cut(s) | 1286 |
| AvaII | GGWCC | 2 cut(s) | 1162, 1208 |
| AxyI | CCTNAGG | 1 cut(s) | 940 |
| BanII | GRGCYC | 1 cut(s) | 1316 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1923, 1955 |
| BauI | CACGAG | 1 cut(s) | 81 |
| BbsI | GAAGAC | 1 cut(s) | 888 |
| BbvCI | CCTCAGC | 1 cut(s) | 1359 |
| BbvI | GCAGC | 7 cut(s) | 416, 796, 1324, 1327, 1501, 1771, 1799 |
| BccI | CCATC | 7 cut(s) | 302, 320, 1220, 1430, 1755, 1990, 2222 |
| BciT130I | CCWGG | 2 cut(s) | 826, 1160 |
| BclI | TGATCA | 1 cut(s) | 1681 |
| BcnI | CCSGG | 2 cut(s) | 1419, 2220 |
| BcoDI | GTCTC | 7 cut(s) | 356, 574, 585, 626, 797, 1148, 1419 |
| BcuI | ACTAGT | 1 cut(s) | 1459 |
| BfaI | CTAG | 3 cut(s) | 1287, 1460, 2034 |
| BfmI | CTRYAG | 1 cut(s) | 1785 |
| BfoI | RGCGCY | 1 cut(s) | 1287 |
| BisI | GCNGC | 7 cut(s) | 430, 810, 1338, 1341, 1490, 1785, 1788 |
| BlsI | GCNGC | 7 cut(s) | 431, 811, 1339, 1342, 1491, 1786, 1789 |
| Bme1390I | CCNGG | 4 cut(s) | 826, 1160, 1419, 2220 |
| Bme18I | GGWCC | 2 cut(s) | 1162, 1208 |
| BmgT120I | GGNCC | 3 cut(s) | 1162, 1208, 1676 |
| BmiI | GGNNCC | 2 cut(s) | 690, 1209 |
| BmrFI | CCNGG | 4 cut(s) | 826, 1160, 1419, 2220 |
| BmrI | ACTGGG | 1 cut(s) | 840 |
| BmsI | GCATC | 8 cut(s) | 127, 774, 1220, 1767, 1799, 1854, 2036, 2219 |
| BmtI | GCTAGC | 1 cut(s) | 1290 |
| BmuI | ACTGGG | 1 cut(s) | 840 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1160 |
| BpiI | GAAGAC | 1 cut(s) | 888 |
| BpmI | CTGGAG | 1 cut(s) | 1692 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1239, 1359 |
| BpuEI | CTTGAG | 1 cut(s) | 1990 |
| BpuMI | CCSGG | 2 cut(s) | 1419, 2220 |
| BsaBI | GATNNNNATC | 2 cut(s) | 480, 2232 |
| BsaI | GGTCTC | 1 cut(s) | 1148 |
| BsaJI | CCNNGG | 3 cut(s) | 1158, 1353, 1418 |
| BsaWI | WCCGGW | 2 cut(s) | 58, 2070 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 831, 945 |
| Bse118I | RCCGGY | 2 cut(s) | 58, 2070 |
| Bse1I | ACTGG | 5 cut(s) | 92, 835, 890, 981, 988 |
| Bse21I | CCTNAGG | 1 cut(s) | 940 |
| Bse3DI | GCAATG | 1 cut(s) | 1842 |
| Bse8I | GATNNNNATC | 2 cut(s) | 480, 2232 |
| BseBI | CCWGG | 2 cut(s) | 826, 1160 |
| BseDI | CCNNGG | 3 cut(s) | 1158, 1353, 1418 |
| BseJI | GATNNNNATC | 2 cut(s) | 480, 2232 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 831, 945 |
| BseMI | GCAATG | 1 cut(s) | 1842 |
| BseMII | CTCAG | 7 cut(s) | 444, 792, 954, 1113, 1230, 1350, 2109 |
| BseNI | ACTGG | 5 cut(s) | 92, 835, 890, 981, 988 |
| BseRI | GAGGAG | 3 cut(s) | 1376, 1379, 1491 |
| BseXI | GCAGC | 7 cut(s) | 416, 796, 1324, 1327, 1501, 1771, 1799 |
| BseYI | CCCAGC | 1 cut(s) | 2165 |
| BsgI | GTGCAG | 1 cut(s) | 1222 |
| Bsh1236I | CGCG | 1 cut(s) | 1795 |
| BshFI | GGCC | 2 cut(s) | 91, 1677 |
| BshTI | ACCGGT | 2 cut(s) | 58, 2070 |
| BsiSI | CCGG | 5 cut(s) | 59, 629, 1418, 2071, 2219 |
| BslFI | GGGAC | 2 cut(s) | 1221, 2075 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 831, 945 |
| BsmAI | GTCTC | 7 cut(s) | 356, 574, 585, 626, 797, 1148, 1419 |
| BsmFI | GGGAC | 2 cut(s) | 1221, 2075 |
| BsmI | GAATGC | 1 cut(s) | 1847 |
| BsnI | GGCC | 2 cut(s) | 91, 1677 |
| Bso31I | GGTCTC | 1 cut(s) | 1148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1316 |
| Bsp143I | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| Bsp19I | CCATGG | 1 cut(s) | 1353 |
| BspACI | CCGC | 3 cut(s) | 767, 1793, 1928 |
| BspANI | GGCC | 2 cut(s) | 91, 1677 |
| BspCNI | CTCAG | 7 cut(s) | 445, 793, 953, 1114, 1231, 1351, 2110 |
| BspFNI | CGCG | 1 cut(s) | 1795 |
| BspHI | TCATGA | 1 cut(s) | 2085 |
| BspLI | GGNNCC | 2 cut(s) | 690, 1209 |
| BspMAI | CTGCAG | 1 cut(s) | 1789 |
| BspOI | GCTAGC | 1 cut(s) | 1290 |
| BspPI | GGATC | 2 cut(s) | 962, 1430 |
| BspTNI | GGTCTC | 1 cut(s) | 1148 |
| BsrDI | GCAATG | 1 cut(s) | 1842 |
| BsrFI | RCCGGY | 2 cut(s) | 58, 2070 |
| BsrI | ACTGG | 5 cut(s) | 92, 835, 890, 981, 988 |
| BssAI | RCCGGY | 2 cut(s) | 58, 2070 |
| BssECI | CCNNGG | 3 cut(s) | 1158, 1353, 1418 |
| BssMI | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| BssSI | CACGAG | 1 cut(s) | 81 |
| BssT1I | CCWWGG | 1 cut(s) | 1353 |
| Bst2BI | CACGAG | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 2 cut(s) | 826, 1160 |
| Bst4CI | ACNGT | 6 cut(s) | 239, 244, 577, 1304, 1896, 2066 |
| Bst6I | CTCTTC | 2 cut(s) | 307, 465 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1809 |
| BstC8I | GCNNGC | 4 cut(s) | 551, 1235, 1282, 1288 |
| BstDEI | CTNAG | 9 cut(s) | 453, 497, 543, 801, 940, 1122, 1239, 1359, 2118 |
| BstDSI | CCRYGG | 1 cut(s) | 1353 |
| BstEII | GGTNACC | 1 cut(s) | 834 |
| BstFNI | CGCG | 1 cut(s) | 1795 |
| BstH2I | RGCGCY | 1 cut(s) | 1287 |
| BstHHI | GCGC | 1 cut(s) | 1286 |
| BstKTI | GATC | 9 cut(s) | 357, 484, 970, 1090, 1425, 1530, 1684, 1689, 2236 |
| BstMAI | GTCTC | 7 cut(s) | 356, 574, 585, 626, 797, 1148, 1419 |
| BstMBI | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1320, 1809, 1958, 1988, 1997, 2162 |
| BstNI | CCWGG | 2 cut(s) | 826, 1160 |
| BstNSI | RCATGY | 1 cut(s) | 369 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1160 |
| BstPI | GGTNACC | 1 cut(s) | 834 |
| BstSCI | CCNGG | 4 cut(s) | 824, 1158, 1417, 2218 |
| BstSFI | CTRYAG | 1 cut(s) | 1785 |
| BstUI | CGCG | 1 cut(s) | 1795 |
| BstV1I | GCAGC | 7 cut(s) | 416, 796, 1324, 1327, 1501, 1771, 1799 |
| BstV2I | GAAGAC | 1 cut(s) | 888 |
| BstX2I | RGATCY | 1 cut(s) | 1422 |
| BstYI | RGATCY | 1 cut(s) | 1422 |
| Bsu36I | CCTNAGG | 1 cut(s) | 940 |
| BsuRI | GGCC | 2 cut(s) | 91, 1677 |
| BtgI | CCRYGG | 1 cut(s) | 1353 |
| BtgZI | GCGATG | 2 cut(s) | 1065, 1595 |
| BtsIMutI | CAGTG | 3 cut(s) | 344, 995, 1205 |
| Cac8I | GCNNGC | 4 cut(s) | 551, 1235, 1282, 1288 |
| CaiI | CAGNNNCTG | 1 cut(s) | 812 |
| CciI | TCATGA | 1 cut(s) | 2085 |
| CfoI | GCGC | 1 cut(s) | 1286 |
| Cfr10I | RCCGGY | 2 cut(s) | 58, 2070 |
| Cfr13I | GGNCC | 3 cut(s) | 1162, 1208, 1676 |
| Csp6I | GTAC | 3 cut(s) | 228, 240, 889 |
| CspAI | ACCGGT | 2 cut(s) | 58, 2070 |
| CviQI | GTAC | 3 cut(s) | 228, 240, 889 |
| DdeI | CTNAG | 9 cut(s) | 453, 497, 543, 801, 940, 1122, 1239, 1359, 2118 |
| DpnI | GATC | 9 cut(s) | 356, 483, 969, 1089, 1424, 1529, 1683, 1688, 2235 |
| DpnII | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| Eam1104I | CTCTTC | 2 cut(s) | 307, 465 |
| EarI | CTCTTC | 2 cut(s) | 307, 465 |
| Eco130I | CCWWGG | 1 cut(s) | 1353 |
| Eco24I | GRGCYC | 1 cut(s) | 1316 |
| Eco31I | GGTCTC | 1 cut(s) | 1148 |
| Eco32I | GATATC | 1 cut(s) | 1597 |
| Eco47I | GGWCC | 2 cut(s) | 1162, 1208 |
| Eco47III | AGCGCT | 1 cut(s) | 1285 |
| Eco57I | CTGAAG | 2 cut(s) | 368, 690 |
| Eco81I | CCTNAGG | 1 cut(s) | 940 |
| Eco91I | GGTNACC | 1 cut(s) | 834 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1208, 1676 |
| EcoO65I | GGTNACC | 1 cut(s) | 834 |
| EcoRI | GAATTC | 1 cut(s) | 1720 |
| EcoRII | CCWGG | 2 cut(s) | 824, 1158 |
| EcoRV | GATATC | 1 cut(s) | 1597 |
| EcoT14I | CCWWGG | 1 cut(s) | 1353 |
| EcoT22I | ATGCAT | 1 cut(s) | 1869 |
| EcoT38I | GRGCYC | 1 cut(s) | 1316 |
| ErhI | CCWWGG | 1 cut(s) | 1353 |
| FaqI | GGGAC | 2 cut(s) | 1221, 2075 |
| FauI | CCCGC | 1 cut(s) | 760 |
| FauNDI | CATATG | 1 cut(s) | 122 |
| FbaI | TGATCA | 1 cut(s) | 1681 |
| Fnu4HI | GCNGC | 7 cut(s) | 430, 810, 1338, 1341, 1490, 1785, 1788 |
| FriOI | GRGCYC | 1 cut(s) | 1316 |
| Fsp4HI | GCNGC | 7 cut(s) | 430, 810, 1338, 1341, 1490, 1785, 1788 |
| FspBI | CTAG | 3 cut(s) | 1287, 1460, 2034 |
| GlaI | GCGC | 1 cut(s) | 1285 |
| GluI | GCNGC | 7 cut(s) | 430, 810, 1338, 1341, 1490, 1785, 1788 |
| GsaI | CCCAGC | 1 cut(s) | 2169 |
| GsuI | CTGGAG | 1 cut(s) | 1692 |
| HaeII | RGCGCY | 1 cut(s) | 1287 |
| HaeIII | GGCC | 2 cut(s) | 91, 1677 |
| HapII | CCGG | 5 cut(s) | 59, 629, 1418, 2071, 2219 |
| HhaI | GCGC | 1 cut(s) | 1286 |
| Hin6I | GCGC | 1 cut(s) | 1284 |
| HinP1I | GCGC | 1 cut(s) | 1284 |
| HinfI | GANTC | 8 cut(s) | 278, 701, 928, 1190, 1346, 1474, 1627, 1738 |
| HpaII | CCGG | 5 cut(s) | 59, 629, 1418, 2071, 2219 |
| HphI | GGTGA | 3 cut(s) | 161, 1040, 1527 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 1048 |
| Hpy188III | TCNNGA | 8 cut(s) | 106, 650, 692, 971, 1478, 1690, 2086, 2237 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 1048 |
| HpyAV | CCTTC | 4 cut(s) | 81, 520, 1019, 1912 |
| HpyCH4III | ACNGT | 6 cut(s) | 239, 244, 577, 1304, 1896, 2066 |
| HpyCH4IV | ACGT | 6 cut(s) | 271, 388, 1265, 1382, 1495, 2124 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1320, 1809, 1958, 1988, 1997, 2162 |
| HpyF3I | CTNAG | 9 cut(s) | 453, 497, 543, 801, 940, 1122, 1239, 1359, 2118 |
| HpySE526I | ACGT | 6 cut(s) | 271, 388, 1265, 1382, 1495, 2124 |
| HspAI | GCGC | 1 cut(s) | 1284 |
| Ksp22I | TGATCA | 1 cut(s) | 1681 |
| Kzo9I | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| LmnI | GCTCC | 2 cut(s) | 1295, 1667 |
| Lsp1109I | GCAGC | 7 cut(s) | 416, 796, 1324, 1327, 1501, 1771, 1799 |
| LweI | GCATC | 8 cut(s) | 127, 774, 1220, 1767, 1799, 1854, 2036, 2219 |
| MaeI | CTAG | 3 cut(s) | 1287, 1460, 2034 |
| MaeII | ACGT | 6 cut(s) | 271, 388, 1265, 1382, 1495, 2124 |
| MaeIII | GTNAC | 9 cut(s) | 755, 834, 983, 1219, 1261, 1298, 1581, 2011, 2066 |
| MalI | GATC | 9 cut(s) | 356, 483, 969, 1089, 1424, 1529, 1683, 1688, 2235 |
| MboI | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| MfeI | CAATTG | 2 cut(s) | 1575, 1659 |
| MflI | RGATCY | 1 cut(s) | 1422 |
| MhlI | GDGCHC | 1 cut(s) | 1316 |
| MlyI | GAGTC | 1 cut(s) | 1483 |
| Mph1103I | ATGCAT | 1 cut(s) | 1869 |
| MroXI | GAANNNNTTC | 1 cut(s) | 388 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2090 |
| MspA1I | CMGCKG | 1 cut(s) | 809 |
| MspI | CCGG | 5 cut(s) | 59, 629, 1418, 2071, 2219 |
| MspR9I | CCNGG | 4 cut(s) | 826, 1160, 1419, 2220 |
| MunI | CAATTG | 2 cut(s) | 1575, 1659 |
| Mva1269I | GAATGC | 1 cut(s) | 1847 |
| MvaI | CCWGG | 2 cut(s) | 826, 1160 |
| MvnI | CGCG | 1 cut(s) | 1795 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1320, 1809, 1958, 1988, 1997, 2162 |
| NciI | CCSGG | 2 cut(s) | 1419, 2220 |
| NcoI | CCATGG | 1 cut(s) | 1353 |
| NdeI | CATATG | 1 cut(s) | 122 |
| NdeII | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| NheI | GCTAGC | 1 cut(s) | 1286 |
| NlaIV | GGNNCC | 2 cut(s) | 690, 1209 |
| NmeAIII | GCCGAG | 1 cut(s) | 1675 |
| NmuCI | GTSAC | 2 cut(s) | 755, 1298 |
| NsiI | ATGCAT | 1 cut(s) | 1869 |
| NspI | RCATGY | 1 cut(s) | 369 |
| PagI | TCATGA | 1 cut(s) | 2085 |
| PctI | GAATGC | 1 cut(s) | 1847 |
| PdmI | GAANNNNTTC | 1 cut(s) | 388 |
| PfeI | GAWTC | 7 cut(s) | 278, 701, 928, 1190, 1346, 1627, 1738 |
| PfoI | TCCNGGA | 2 cut(s) | 824, 2218 |
| PinAI | ACCGGT | 2 cut(s) | 58, 2070 |
| PkrI | GCNGC | 7 cut(s) | 431, 811, 1339, 1342, 1491, 1786, 1789 |
| PleI | GAGTC | 1 cut(s) | 1482 |
| PpsI | GAGTC | 1 cut(s) | 1482 |
| PpuMI | RGGWCCY | 1 cut(s) | 1208 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1160 |
| PshBI | ATTAAT | 1 cut(s) | 1215 |
| Psp1406I | AACGTT | 3 cut(s) | 388, 1382, 2124 |
| Psp5II | RGGWCCY | 1 cut(s) | 1208 |
| Psp6I | CCWGG | 2 cut(s) | 824, 1158 |
| PspEI | GGTNACC | 1 cut(s) | 834 |
| PspFI | CCCAGC | 1 cut(s) | 2165 |
| PspGI | CCWGG | 2 cut(s) | 824, 1158 |
| PspN4I | GGNNCC | 2 cut(s) | 690, 1209 |
| PspPI | GGNCC | 3 cut(s) | 1162, 1208, 1676 |
| PspPPI | RGGWCCY | 1 cut(s) | 1208 |
| PstI | CTGCAG | 1 cut(s) | 1789 |
| PstNI | CAGNNNCTG | 1 cut(s) | 812 |
| PsuI | RGATCY | 1 cut(s) | 1422 |
| PvuII | CAGCTG | 1 cut(s) | 809 |
| RsaI | GTAC | 3 cut(s) | 229, 241, 890 |
| RsaNI | GTAC | 3 cut(s) | 228, 240, 889 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2090 |
| SatI | GCNGC | 7 cut(s) | 430, 810, 1338, 1341, 1490, 1785, 1788 |
| Sau3AI | GATC | 9 cut(s) | 354, 481, 967, 1087, 1422, 1527, 1681, 1686, 2233 |
| Sau96I | GGNCC | 3 cut(s) | 1162, 1208, 1676 |
| SchI | GAGTC | 1 cut(s) | 1483 |
| ScrFI | CCNGG | 4 cut(s) | 826, 1160, 1419, 2220 |
| SduI | GDGCHC | 1 cut(s) | 1316 |
| SfaNI | GCATC | 8 cut(s) | 127, 774, 1220, 1767, 1799, 1854, 2036, 2219 |
| SfcI | CTRYAG | 1 cut(s) | 1785 |
| SinI | GGWCC | 2 cut(s) | 1162, 1208 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2090 |
| SmlI | CTYRAG | 1 cut(s) | 1969 |
| SmoI | CTYRAG | 1 cut(s) | 1969 |
| SpeI | ACTAGT | 1 cut(s) | 1459 |
| SsiI | CCGC | 3 cut(s) | 767, 1793, 1928 |
| SspMI | CTAG | 3 cut(s) | 1287, 1460, 2034 |
| StyD4I | CCNGG | 4 cut(s) | 824, 1158, 1417, 2218 |
| StyI | CCWWGG | 1 cut(s) | 1353 |
| TaaI | ACNGT | 6 cut(s) | 239, 244, 577, 1304, 1896, 2066 |
| TaiI | ACGT | 6 cut(s) | 274, 391, 1268, 1385, 1498, 2127 |
| TaqI | TCGA | 1 cut(s) | 996 |
| TatI | WGTACW | 2 cut(s) | 227, 239 |
| TfiI | GAWTC | 7 cut(s) | 278, 701, 928, 1190, 1346, 1627, 1738 |
| TscAI | CASTG | 3 cut(s) | 351, 995, 1205 |
| TseFI | GTSAC | 2 cut(s) | 755, 1298 |
| TseI | GCWGC | 7 cut(s) | 429, 809, 1337, 1340, 1489, 1784, 1787 |
| Tsp45I | GTSAC | 2 cut(s) | 755, 1298 |
| TspGWI | ACGGA | 1 cut(s) | 1052 |
| TspRI | CASTG | 3 cut(s) | 351, 995, 1205 |
| VpaK11BI | GGWCC | 2 cut(s) | 1162, 1208 |
| VspI | ATTAAT | 1 cut(s) | 1215 |
| XapI | RAATTY | 4 cut(s) | 101, 1720, 2189, 2246 |
| XceI | RCATGY | 1 cut(s) | 369 |
| XmnI | GAANNNNTTC | 1 cut(s) | 388 |
| XspI | CTAG | 3 cut(s) | 1287, 1460, 2034 |
| Zsp2I | ATGCAT | 1 cut(s) | 1869 |