Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026201.1

Orthogroup ID

OG0007970

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 447

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 440 bp

atggaattaagaagttgcatccatttgcacttcatcaagactctgactggtggcgtattgaaaaaaacactgaatgtgactcgtggaaaaccagtactcagattcaagaatgtgaaagacatatgtgaagaactagatgccaaaaatggtcatttgtttccaacaattccaccaaaagatgagttccggggcctgcatattgacagctctaggatcatgactgaaagcacagatacaggtaatgttggaaatataaaaatcaagagtgaacctgaagattctggctttgattgtaatgatggaggaaacagtgatttggattgctctggtaatatgacactgaagcagatcaagcagacatgcaagacaaagaaaagaaagcgttcaaagttcactgatttgaacgaacaattagaaacgtgctctcctgtaaaacaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

8.9

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56870 AT3G56870
fragaria_vesca	FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990 FvH4_2g39990
malus_domestica	MD08G1033800.v1.1 MD15G1030400.v1.1
prunus_persica	Prupe.1G381200_v2.0.a1
pyrus_communis	pycom08g02700 pycom15g02670
rosa_chinensis	RchiOBHm_Chr6g0300761
rosa_laevigata	RLG00000011304
rosa_multiflora	Rmu_co8197360.1_g000001 Rmu_sc0003626.1_g000001 Rmu_sc0026201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167440
rosa_rugosa	Rorug06G0298900 Rorug06G0299000
rosa_samantha	Rh6AG411800 Rh6BG419000 Rh6CG426500 Rh6DG411900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	294, 362
AfaI	GTAC	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	61, 106, 387, 403
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw21I	GWGCWC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	188
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	425
BccI	CCATC	1 cut(s)	293
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	134, 210
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	27, 127
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bse1I	ACTGG	2 cut(s)	52, 92
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	52, 92
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	187
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	213, 348
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	52, 92
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	213, 348
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	216, 351
BstMBI	GATC	2 cut(s)	213, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	68, 316, 338, 393
Cac8I	GCNNGC	1 cut(s)	194
CciI	TCATGA	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	2 cut(s)	217, 360
CviJI	RGCY	3 cut(s)	192, 207, 285
CviKI_1	RGCY	3 cut(s)	192, 207, 285
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	2 cut(s)	215, 350
DpnII	GATC	2 cut(s)	213, 348
Eco57I	CTGAAG	2 cut(s)	294, 362
EcoO109I	RGGNCCY	1 cut(s)	190
FaeI	CATG	2 cut(s)	220, 363
FaiI	YATR	7 cut(s)	122, 124, 198, 218, 254, 335, 361
FatI	CATG	2 cut(s)	216, 359
FauNDI	CATATG	1 cut(s)	122
FokI	GGATG	1 cut(s)	5
FspBI	CTAG	2 cut(s)	134, 210
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	2 cut(s)	220, 363
HinfI	GANTC	4 cut(s)	40, 79, 102, 278
HpaII	CCGG	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	269, 393
Hpy188I	TCNGA	2 cut(s)	45, 101
Hpy188III	TCNNGA	4 cut(s)	37, 106, 217, 262
Hpy8I	GTNNAC	2 cut(s)	269, 393
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	4 cut(s)	18, 28, 196, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	220, 363
Kzo9I	GATC	2 cut(s)	213, 348
LpnPI	CCDG	8 cut(s)	33, 105, 200, 206, 222, 267, 285, 312
LweI	GCATC	2 cut(s)	27, 127
MaeI	CTAG	2 cut(s)	134, 210
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	215, 350
MboI	GATC	2 cut(s)	213, 348
MboII	GAAGA	2 cut(s)	140, 287
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	5, 165, 410
MlyI	GAGTC	2 cut(s)	34, 73
MmeI	TCCRAC	2 cut(s)	185, 226
MnlI	CCTC	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	8
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	2 cut(s)	213, 348
NlaIII	CATG	2 cut(s)	220, 363
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	363
PagI	TCATGA	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	102, 278
PleI	GAGTC	2 cut(s)	34, 73
PpsI	GAGTC	2 cut(s)	34, 73
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	213, 348
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	2 cut(s)	34, 73
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	4 cut(s)	209, 241, 274, 422
SfaNI	GCATC	2 cut(s)	27, 127
Sse9I	AATT	3 cut(s)	5, 165, 410
SspMI	CTAG	2 cut(s)	134, 210
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	422
TasI	AATT	3 cut(s)	5, 165, 410
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	102, 278
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	4 cut(s)	75, 316, 345, 400
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	4 cut(s)	75, 316, 345, 400
XceI	RCATGY	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	2 cut(s)	134, 210
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.