Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013493

Physical Location & Seq

Genomic Coordinates Reverse (-)

21101454 .. 21103719

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGACCATGATGATCATTACAGTGTTCTTAACAGTGATTGCAGCGGTTCTCGCAATCCTTGTCAAGAATTCTCAAACCGGTTCTGGCATCTTCGCACCGCCTGAAATCTCCGGTTCGCGTGATGTTTTCCCGTCGGCGAAAGTGGTTAACTTAACCGGAGCCTCTGGTCCTGAGAGTATAGCTTTCGATCCAGCAGGTGAAGGTCCGTACGTTGGTGTCTCAGATGGTCGTATCTTGAAATGGCGCGGTGAACCGCTTGGATGGTCAGATTTCGCTCACACATCGTCTAACAGGCAGGAGTGTGCTCGCCCATTTGCACCAGAGTTGGAGCATGTGTGTGGAAGGCCATTAGGGTTGCGGTTCGATAAGAAAACCGGAGATCTCTACATAGCGGATGCCTACTTTGGCCTTCTTGTTGTTGGTCCTGCTGGTGGTTTAGCCAAACCTCTGGTTACAGAAGCTGAGGGGCAGCCGTTTCGTTTCACTAATGATTTGGATATTGATGAGCAGGAAGATGTGATTTACTTTACAGATACTAGTGCCAGATTCCAGAGAAGGCAATTCTTAGCTGCTGTTTTGAACGTCGATAAGACTGGAAGGTTTATCAAGTATGATAGATCAAGCAAGAAAGCGACAGTCTTATTACAAGGCCTTGCATTTGCAAACGGCGTTGCACTAAGCAAAGACCGGTCTTTTGTATTGGTAGTCGAAACAACTACTTGCAAGATTCTAAGACTTTGGCTCTCTGGTCCAAACGCAGGAACACACCAAGTGTTTGCTGAGCTTCCGGGTTTCCCTGACAACATCAGAAGAAACTCGAATGGAGAATTCTGGGTCGCTTTACACTCAAAGAAAGGTCTTTTCGCGAAACTATCACTTACTCAAACTTGGTTCAGGGATTTGGTGCTTAGACTTCCGATCAGTCCCCAACGCCTGCACTCGCTGTTCACTGGAGGAATACCTCATGCTACAGCCATAAAGCTGAGTGAATCAGGTAAGGTTTTGGAGGTACTTGAGGATAAGGAAGGAAAGACATTGAGGTTTATAAGTGAAGTGGAAGAGAAAGACGGCAAGCTTTGGATTGGTTCTGTTCTCGTGCCTTTTCTTGGTGTCTATGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

374

Amino Acids

41.0

Weight (kDa)

7.71

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	114 - 285	3.1e-11	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	163 - 250	6.8e-33	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57030
fragaria_vesca	FvH4_7g24670 FvH4_7g24670 FvH4_7g24670
malus_domestica	MD14G1085600.v1.1
prunus_persica	Prupe.7G041500_v2.0.a1 Prupe.7G041500_v2.0.a1
pyrus_communis	pycom14g07530
rosa_chinensis	RchiOBHm_Chr2g0125411
rosa_laevigata	RLG00000018861
rosa_multiflora	Rmu_sc0000878.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118050
rosa_rugosa	Rorug02G0257100
rosa_samantha	Rh2AG315700 Rh2BG323500 Rh2CG305700 Rh2DG342000
rosa_wichuraiana	Rw2G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AccII	CGCG	3 cut(s)	118, 246, 866
AciI	CCGC	6 cut(s)	44, 98, 246, 254, 358, 392
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	67, 827
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	2 cut(s)	209, 1011
AfiI	CCNNNNNNNGG	4 cut(s)	212, 431, 758, 1106
AgeI	ACCGGT	2 cut(s)	77, 687
AgsI	TTSAA	2 cut(s)	238, 580
AhlI	ACTAGT	1 cut(s)	536
AluBI	AGCT	6 cut(s)	182, 461, 569, 784, 982, 1075
AluI	AGCT	6 cut(s)	182, 461, 569, 784, 982, 1075
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	344, 406, 649
ApeKI	GCWGC	3 cut(s)	41, 469, 569
ApoI	RAATTY	2 cut(s)	67, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AsiGI	ACCGGT	2 cut(s)	77, 687
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	4 cut(s)	167, 203, 422, 749
AsuC2I	CCSGG	1 cut(s)	789
AsuHPI	GGTGA	2 cut(s)	209, 260
AvaII	GGWCC	4 cut(s)	167, 203, 422, 749
BauI	CACGAG	1 cut(s)	1094
Bbv12I	GWGCWC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	53, 481, 556
BccI	CCATC	2 cut(s)	218, 255
BceAI	ACGGC	3 cut(s)	457, 682, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	789
BcoDI	GTCTC	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	3 cut(s)	42, 470, 570
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	3 cut(s)	43, 471, 571
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	4 cut(s)	167, 203, 422, 749
BmgT120I	GGNCC	4 cut(s)	167, 203, 422, 749
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	2 cut(s)	96, 385
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	1034
BpuMI	CCSGG	1 cut(s)	789
BsaWI	WCCGGW	5 cut(s)	77, 110, 155, 374, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 431, 758, 1106
Bse118I	RCCGGY	2 cut(s)	77, 687
Bse1I	ACTGG	2 cut(s)	598, 955
BseGI	GGATG	2 cut(s)	266, 400
BseLI	CCNNNNNNNGG	4 cut(s)	212, 431, 758, 1106
BseMII	CTCAG	5 cut(s)	162, 234, 453, 771, 974
BseNI	ACTGG	2 cut(s)	598, 955
BseXI	GCAGC	3 cut(s)	53, 481, 556
BsgI	GTGCAG	1 cut(s)	920
Bsh1236I	CGCG	3 cut(s)	118, 246, 866
BshFI	GGCC	3 cut(s)	346, 408, 651
BshTI	ACCGGT	2 cut(s)	77, 687
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	6 cut(s)	78, 111, 156, 375, 688, 788
BsiWI	CGTACG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	4 cut(s)	212, 431, 758, 1106
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	909
BsnI	GGCC	3 cut(s)	346, 408, 651
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	12, 187, 379, 617, 918
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	866
BspACI	CCGC	6 cut(s)	44, 98, 246, 254, 358, 392
BspANI	GGCC	3 cut(s)	346, 408, 651
BspCNI	CTCAG	5 cut(s)	163, 233, 454, 772, 975
BspFNI	CGCG	3 cut(s)	118, 246, 866
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	182
BsrFI	RCCGGY	2 cut(s)	77, 687
BsrI	ACTGG	2 cut(s)	598, 955
BssAI	RCCGGY	2 cut(s)	77, 687
BssMI	GATC	5 cut(s)	12, 187, 379, 617, 918
BssSI	CACGAG	1 cut(s)	1094
Bst2BI	CACGAG	1 cut(s)	1094
Bst4CI	ACNGT	3 cut(s)	22, 34, 637
Bst6I	CTCTTC	1 cut(s)	1053
BstC8I	GCNNGC	3 cut(s)	307, 935, 1073
BstDEI	CTNAG	9 cut(s)	171, 220, 462, 565, 677, 731, 780, 908, 983
BstF5I	GGATG	2 cut(s)	266, 400
BstFNI	CGCG	3 cut(s)	118, 246, 866
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	5 cut(s)	15, 190, 382, 620, 921
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	5 cut(s)	12, 187, 379, 617, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	787
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	3 cut(s)	118, 246, 866
BstV1I	GCAGC	3 cut(s)	53, 481, 556
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	346, 408, 651
BtsCI	GGATG	2 cut(s)	266, 400
BtsIMutI	CAGTG	3 cut(s)	27, 39, 948
BtuMI	TCGCGA	1 cut(s)	866
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	307, 935, 1073
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	77, 687
Cfr13I	GGNCC	4 cut(s)	167, 203, 422, 749
Csp6I	GTAC	2 cut(s)	208, 1010
CspAI	ACCGGT	2 cut(s)	77, 687
CviAII	CATG	3 cut(s)	7, 332, 965
CviQI	GTAC	2 cut(s)	208, 1010
DdeI	CTNAG	9 cut(s)	171, 220, 462, 565, 677, 731, 780, 908, 983
DpnI	GATC	5 cut(s)	14, 189, 381, 619, 920
DpnII	GATC	5 cut(s)	12, 187, 379, 617, 918
DraIII	CACNNNGTG	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	1053
EarI	CTCTTC	1 cut(s)	1053
Eco147I	AGGCCT	1 cut(s)	651
Eco47I	GGWCC	4 cut(s)	167, 203, 422, 749
EcoRI	GAATTC	2 cut(s)	67, 827
FaeI	CATG	3 cut(s)	10, 335, 968
FaiI	YATR	9 cut(s)	8, 179, 333, 389, 612, 966, 977, 1046, 1116
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	3 cut(s)	6, 331, 964
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	42, 470, 570
FokI	GGATG	2 cut(s)	273, 407
Fsp4HI	GCNGC	3 cut(s)	42, 470, 570
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	42, 470, 570
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	3 cut(s)	346, 408, 651
HapII	CCGG	6 cut(s)	78, 111, 156, 375, 688, 788
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	10, 335, 968
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	1073
HinfI	GANTC	3 cut(s)	546, 727, 989
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	6 cut(s)	78, 111, 156, 375, 688, 788
HphI	GGTGA	2 cut(s)	209, 260
Hpy166II	GTNNAC	3 cut(s)	148, 251, 948
Hpy188I	TCNGA	4 cut(s)	223, 268, 809, 918
Hpy188III	TCNNGA	5 cut(s)	64, 170, 235, 550, 865
Hpy8I	GTNNAC	3 cut(s)	148, 251, 948
Hpy99I	CGWCG	2 cut(s)	136, 587
HpyAV	CCTTC	6 cut(s)	194, 336, 419, 549, 591, 1019
HpyCH4III	ACNGT	3 cut(s)	22, 34, 637
HpyCH4IV	ACGT	2 cut(s)	210, 582
HpyCH4V	TGCA	7 cut(s)	41, 317, 656, 662, 674, 723, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	9 cut(s)	171, 220, 462, 565, 677, 731, 780, 908, 983
HpySE526I	ACGT	2 cut(s)	210, 582
Hsp92II	CATG	3 cut(s)	10, 335, 968
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	12
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	12, 187, 379, 617, 918
LmnI	GCTCC	2 cut(s)	158, 328
Lsp1109I	GCAGC	3 cut(s)	53, 481, 556
LweI	GCATC	2 cut(s)	96, 385
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	2 cut(s)	210, 582
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	5 cut(s)	14, 189, 381, 619, 920
MboI	GATC	5 cut(s)	12, 187, 379, 617, 918
MboII	GAAGA	4 cut(s)	82, 524, 822, 1070
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	67, 560, 827
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	172, 456, 457, 947, 972, 1000, 1009, 1032
MseI	TTAA	3 cut(s)	29, 147, 152
MslI	CAYNNNNRTG	2 cut(s)	20, 336
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	6 cut(s)	78, 111, 156, 375, 688, 788
MspR9I	CCNGG	1 cut(s)	789
MvnI	CGCG	3 cut(s)	118, 246, 866
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	789
NdeII	GATC	5 cut(s)	12, 187, 379, 617, 918
NlaIII	CATG	3 cut(s)	10, 335, 968
NlaIV	GGNNCC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	866
NspI	RCATGY	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	546, 727, 989
Pfl23II	CGTACG	1 cut(s)	207
PinAI	ACCGGT	2 cut(s)	77, 687
PkrI	GCNGC	3 cut(s)	43, 471, 571
PsiI	TTATAA	1 cut(s)	1046
PspLI	CGTACG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	167, 203, 422, 749
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	379
RruI	TCGCGA	1 cut(s)	866
RsaI	GTAC	2 cut(s)	209, 1011
RsaNI	GTAC	2 cut(s)	208, 1010
RseI	CAYNNNNRTG	2 cut(s)	20, 336
SaqAI	TTAA	3 cut(s)	29, 147, 152
SatI	GCNGC	3 cut(s)	42, 470, 570
Sau3AI	GATC	5 cut(s)	12, 187, 379, 617, 918
Sau96I	GGNCC	4 cut(s)	167, 203, 422, 749
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	96, 385
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	4 cut(s)	167, 203, 422, 749
SmiMI	CAYNNNNRTG	2 cut(s)	20, 336
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	3 cut(s)	67, 560, 827
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	6 cut(s)	44, 98, 246, 254, 358, 392
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	3 cut(s)	22, 34, 637
TaiI	ACGT	2 cut(s)	213, 585
TaqI	TCGA	5 cut(s)	186, 363, 585, 708, 818
TasI	AATT	3 cut(s)	67, 560, 827
TfiI	GAWTC	3 cut(s)	546, 727, 989
Tru1I	TTAA	3 cut(s)	29, 147, 152
Tru9I	TTAA	3 cut(s)	29, 147, 152
TscAI	CASTG	3 cut(s)	27, 39, 955
TseI	GCWGC	3 cut(s)	41, 469, 569
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	3 cut(s)	27, 39, 955
VpaK11BI	GGWCC	4 cut(s)	167, 203, 422, 749
XapI	RAATTY	2 cut(s)	67, 827
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.