Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013493

Physical Location & Seq

Genomic Coordinates Reverse (-)

7742320 .. 7746283

Gene Structure 3964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAACTCAAAGTTAACTTTGATTGCAGCAACACTAGCTGTAGTGTCCGTAGTGTTGGCTCTGAACCCACTTTATTTGTTGAAGCTTTTTGGTAATGGAGTAGCTCCTATTTCAGGGTCCCATGACCTCCTCCACACTGCACAATTAATACAGGTACCCGGAGCCCTTGGCCCAGAGAGCCTTGCCTTCGACCCCAACGGCGGTGGGCCCTACACCGGCGTCGCCGACGGCCGTATTCTCAAGTGGGATCAAAACGACCGTCGTTGGACTGACTTTGCTGTCACCTCTTCTCAGAGGAAGGAGTGCATTCGCCCTTTTGCACCAGAACTGGAGCATGTTTGTGGAAGGCCTTTAGGACTAAAGTTTGATACGGAAACTGGAGATCTCTATATTGCTGATGCATACCTTGGCCTTCAAGTAGTAGGCCCTGCTGGAGGTTTGGCATCTCAAGTGGTCAGAGAAGTTGAAGGTCAGCCACTTCGCTTCACCAATGATATGGACATTGATGAGCATAAGGATGTGATTTACTTCACAGATTCAAGCACAGTATTCCACAGAAGGCAATTCATGTCATCAATCTTGAATGGAGACCGAACTGGCAGATTACTCAAATACAATAAATCAAACAAAGAAGTAACAGTTTTACTACGAGGTCTTGCCTTTGCCAACGGTGTTGCATTGAGCAAAGACCACTCTTTTGTGCTAGTGGCTGAAACAACTACTTGCAGGATCTTGAGGCTTTGGCTTCATGGTCCAAATGCCGGAAATACTGATACTTTTGCAGAGCTTCCAGGATTCCCAGACAACATAAGAAGGAACTCGAAAGGGGAATTTTGGGTTGCACTGCATGCAAAGAGGGGATTTTTCGCAAAGTGGTTTGTCTCTAACAGATTGGTTGGCAAGTCACTGCTAAAGCTTCCCCTTGATTTTAAACAACTGCATTCGCTACTAGTCGGAGGGAAGGCCCATGCAACTGCTATCAAGTTAAGCGAGACTGGTGAAATTTTGGAAGTTTTGGAAGATTGTGAGGGAAAGAATATGAGATTCATTAGTGAAGTGGAAGAGAAGGATGGCAAGCTGTGGATTGGGTCAGTTTTAATGCCATTTCTAGGCATTTATGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

376

Amino Acids

41.35

Weight (kDa)

6.8

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57030
fragaria_vesca	FvH4_7g24670 FvH4_7g24670 FvH4_7g24670
malus_domestica	MD14G1085600.v1.1
prunus_persica	Prupe.7G041500_v2.0.a1 Prupe.7G041500_v2.0.a1
pyrus_communis	pycom14g07530
rosa_chinensis	RchiOBHm_Chr2g0125411
rosa_laevigata	RLG00000018861
rosa_multiflora	Rmu_sc0000878.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118050
rosa_rugosa	Rorug02G0257100
rosa_samantha	Rh2AG315700 Rh2BG323500 Rh2CG305700 Rh2DG342000
rosa_wichuraiana	Rw2G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	255, 737
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	830, 1002
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	6 cut(s)	113, 200, 215, 434, 761, 1109
AgsI	TTSAA	5 cut(s)	82, 416, 467, 540, 583
AhlI	ACTAGT	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	6 cut(s)	38, 85, 104, 787, 916, 1078
AluI	AGCT	6 cut(s)	38, 85, 104, 787, 916, 1078
Alw26I	GTCTC	3 cut(s)	582, 886, 986
AlwI	GGATC	2 cut(s)	255, 737
AoxI	GGCC	7 cut(s)	169, 206, 229, 347, 409, 424, 963
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	830, 1002
ArsI	GACNNNNNNTTYG	4 cut(s)	244, 276, 680, 712
AseI	ATTAAT	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	154
AspS9I	GGNCC	7 cut(s)	117, 170, 206, 207, 425, 752, 964
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	274, 478, 1010
AvaII	GGWCC	2 cut(s)	117, 752
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	166, 210
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	1064
BceAI	ACGGC	3 cut(s)	214, 216, 244
BciT130I	CCWGG	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	582, 886, 986
BcuI	ACTAGT	1 cut(s)	949
BfaI	CTAG	4 cut(s)	35, 704, 950, 1109
BfmI	CTRYAG	2 cut(s)	39, 1124
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	159, 792
Bme18I	GGWCC	2 cut(s)	117, 752
BmgT120I	GGNCC	7 cut(s)	117, 170, 206, 207, 425, 752, 964
BmiI	GGNNCC	5 cut(s)	118, 119, 156, 163, 208
BmrFI	CCNGG	2 cut(s)	159, 792
BmsI	GCATC	2 cut(s)	388, 452
BpmI	CTGGAG	3 cut(s)	350, 399, 453
BpuEI	CTTGAG	3 cut(s)	224, 432, 754
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	166, 406
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 200, 215, 434, 761, 1109
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	4 cut(s)	333, 382, 601, 1000
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	2 cut(s)	166, 406
BseGI	GGATG	2 cut(s)	523, 1075
BseLI	CCNNNNNNNGG	6 cut(s)	113, 200, 215, 434, 761, 1109
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	4 cut(s)	333, 382, 601, 1000
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	232, 259
BshFI	GGCC	7 cut(s)	171, 208, 231, 349, 411, 426, 965
BshNI	GGYRCC	1 cut(s)	154
BsiEI	CGRYCG	2 cut(s)	232, 259
BsiSI	CCGG	3 cut(s)	159, 216, 762
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	6 cut(s)	113, 200, 215, 434, 761, 1109
BsmAI	GTCTC	3 cut(s)	582, 886, 986
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	306, 940
BsnI	GGCC	7 cut(s)	171, 208, 231, 349, 411, 426, 965
Bso31I	GGTCTC	1 cut(s)	582
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	166, 210
Bsp143I	GATC	3 cut(s)	247, 382, 729
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	7 cut(s)	171, 208, 231, 349, 411, 426, 965
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	5 cut(s)	118, 119, 156, 163, 208
BspPI	GGATC	2 cut(s)	255, 737
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	4 cut(s)	333, 382, 601, 1000
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	166, 406
BssMI	GATC	3 cut(s)	247, 382, 729
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	166, 406
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	5 cut(s)	260, 547, 640, 671, 1125
Bst6I	CTCTTC	2 cut(s)	292, 1056
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	849, 1076
BstDEI	CTNAG	1 cut(s)	291
BstENI	CCTNNNNNAGG	2 cut(s)	111, 432
BstF5I	GGATG	2 cut(s)	523, 1075
BstKTI	GATC	3 cut(s)	250, 385, 732
BstMAI	GTCTC	3 cut(s)	582, 886, 986
BstMBI	GATC	3 cut(s)	247, 382, 729
BstMCI	CGRYCG	2 cut(s)	232, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 177, 848
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	2 cut(s)	338, 851
BstSCI	CCNGG	2 cut(s)	157, 790
BstSFI	CTRYAG	2 cut(s)	39, 1124
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	382, 729
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	2 cut(s)	382, 729
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	7 cut(s)	171, 208, 231, 349, 411, 426, 965
BtsCI	GGATG	2 cut(s)	523, 1075
BtsI	GCAGTG	3 cut(s)	135, 842, 905
BtsIMutI	CAGTG	3 cut(s)	135, 842, 905
Cac8I	GCNNGC	2 cut(s)	849, 1076
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	7 cut(s)	117, 170, 206, 207, 425, 752, 964
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	155
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 184, 219
CviAII	CATG	6 cut(s)	122, 335, 568, 749, 848, 968
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	249, 384, 731
DpnII	GATC	3 cut(s)	247, 382, 729
DraI	TTTAAA	1 cut(s)	931
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	229
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	292, 1056
EarI	CTCTTC	2 cut(s)	292, 1056
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	166, 406
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	166, 210
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	117, 752
Eco52I	CGGCCG	1 cut(s)	229
EcoNI	CCTNNNNNAGG	2 cut(s)	111, 432
EcoO109I	RGGNCCY	3 cut(s)	117, 207, 425
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	166, 406
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	166, 210
ErhI	CCWWGG	2 cut(s)	166, 406
FaeI	CATG	6 cut(s)	125, 338, 571, 752, 851, 971
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	6 cut(s)	121, 334, 567, 748, 847, 967
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	530, 1082
FriOI	GRGCYC	2 cut(s)	166, 210
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	4 cut(s)	35, 704, 950, 1109
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	3 cut(s)	350, 399, 453
HaeIII	GGCC	7 cut(s)	171, 208, 231, 349, 411, 426, 965
HapII	CCGG	3 cut(s)	159, 216, 762
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	125, 338, 571, 752, 851, 971
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	2 cut(s)	83, 914
HinfI	GANTC	3 cut(s)	536, 795, 1044
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	3 cut(s)	159, 216, 762
HphI	GGTGA	3 cut(s)	274, 478, 1010
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	63, 294, 458, 956
Hpy188III	TCNNGA	2 cut(s)	580, 733
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	3 cut(s)	224, 230, 264
HpyAV	CCTTC	9 cut(s)	196, 292, 339, 422, 461, 552, 807, 955, 1060
HpyCH4III	ACNGT	5 cut(s)	260, 547, 640, 671, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 177, 848
HpyF3I	CTNAG	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	125, 338, 571, 752, 851, 971
KflI	GGGWCCC	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	158
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	247, 382, 729
LmnI	GCTCC	3 cut(s)	109, 161, 331
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	388, 452
MaeI	CTAG	4 cut(s)	35, 704, 950, 1109
MaeIII	GTNAC	3 cut(s)	280, 634, 903
MalI	GATC	3 cut(s)	249, 384, 731
MboI	GATC	3 cut(s)	247, 382, 729
MboII	GAAGA	3 cut(s)	279, 1031, 1073
MflI	RGATCY	2 cut(s)	382, 729
MhlI	GDGCHC	2 cut(s)	166, 210
MluCI	AATT	4 cut(s)	143, 563, 830, 1002
MmeI	TCCRAC	2 cut(s)	245, 934
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	5 cut(s)	14, 146, 930, 986, 1097
MslI	CAYNNNNRTG	2 cut(s)	339, 516
MspI	CCGG	3 cut(s)	159, 216, 762
MspR9I	CCNGG	2 cut(s)	159, 792
Mva1269I	GAATGC	2 cut(s)	306, 940
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	35, 177, 848
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	247, 382, 729
NlaIII	CATG	6 cut(s)	125, 338, 571, 752, 851, 971
NlaIV	GGNNCC	5 cut(s)	118, 119, 156, 163, 208
NmuCI	GTSAC	2 cut(s)	280, 903
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	338, 851
PaeI	GCATGC	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	349
PctI	GAATGC	2 cut(s)	306, 940
PfeI	GAWTC	3 cut(s)	536, 795, 1044
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	5 cut(s)	118, 119, 156, 163, 208
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	7 cut(s)	117, 170, 206, 207, 425, 752, 964
PspPPI	RGGWCCY	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	382, 729
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	2 cut(s)	339, 516
SaqAI	TTAA	5 cut(s)	14, 146, 930, 986, 1097
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	247, 382, 729
Sau96I	GGNCC	7 cut(s)	117, 170, 206, 207, 425, 752, 964
ScrFI	CCNGG	2 cut(s)	159, 792
SduI	GDGCHC	2 cut(s)	166, 210
SfaNI	GCATC	2 cut(s)	388, 452
SfcI	CTRYAG	2 cut(s)	39, 1124
SgrAI	CRCCGGYG	1 cut(s)	215
SinI	GGWCC	2 cut(s)	117, 752
SmiMI	CAYNNNNRTG	2 cut(s)	339, 516
SmlI	CTYRAG	3 cut(s)	239, 447, 733
SmoI	CTYRAG	3 cut(s)	239, 447, 733
SpeI	ACTAGT	1 cut(s)	949
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	4 cut(s)	143, 563, 830, 1002
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	4 cut(s)	35, 704, 950, 1109
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	157, 790
StyI	CCWWGG	2 cut(s)	166, 406
TaaI	ACNGT	5 cut(s)	260, 547, 640, 671, 1125
TaqI	TCGA	2 cut(s)	189, 821
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	4 cut(s)	143, 563, 830, 1002
TfiI	GAWTC	3 cut(s)	536, 795, 1044
Tru1I	TTAA	5 cut(s)	14, 146, 930, 986, 1097
Tru9I	TTAA	5 cut(s)	14, 146, 930, 986, 1097
TscAI	CASTG	3 cut(s)	142, 849, 912
TseFI	GTSAC	2 cut(s)	280, 903
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	280, 903
TspDTI	ATGAA	4 cut(s)	17, 556, 737, 1036
TspGWI	ACGGA	2 cut(s)	37, 386
TspRI	CASTG	3 cut(s)	142, 849, 912
VpaK11BI	GGWCC	2 cut(s)	117, 752
VspI	ATTAAT	1 cut(s)	146
XagI	CCTNNNNNAGG	2 cut(s)	111, 432
XapI	RAATTY	2 cut(s)	830, 1002
XceI	RCATGY	2 cut(s)	338, 851
XspI	CTAG	4 cut(s)	35, 704, 950, 1109
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.