Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Forward (+)

21193680 .. 21195790

Gene Structure 2111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTTCACAAATCTCTCAGCTTGCTTGTTTCTCATCCACCAATCGCCAATTTCACTTCCAAAGCCGATCGTTTCCATGCCCTATGATTCGTCCCCAGTCTTTTGTAGTTAAAAGTGTTGATGGGAATAGCTCTGAAACACCAGCTTCTCTAAGCTATACAGCTGAGGTTTCAAAACCTGTTGTTGAGAAAACATCCAAACCGTATTCCACTGTTGATGAAACTGCTACCAATAAAGAGAGCATCACAGAGCCAGTAGAGGAAGATGTTGCCACACAACCAATAAGAGCAGCAAAGATCCACGACTTCTGTTTCGGCATTCCTTATGGTGGTCTCGTTGTGAGTGGAGGGCTTCTTGGTTTTGCGTTTTCACGAAATCTTACAAGTTTAAGTACTGGTGTCCTCTATGGTGGTGGCCTTCTAGCCCTTAGTACACTGAGCTTAAAGATTTGGCGAGAGGGAAAATCTAGTTTCCCTTATATACTAGGACAAGCAGTGCTTTCAGCTGTCGTCTTCTGGAAGAACTTCACAGCTTATTCGATGACTAAGAAGCTGTTTCCGGCCGGGGTTTTTGCTGTCATCAGTGCTTGCATGTTGTGTTTCTATTCATATGTGGTGCTCTCTGGAGGAAACCCACCTCCAAAGAAATTGAAACCATCTGCGACTAGTCCTTCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

226

Amino Acids

24.35

Weight (kDa)

9.18

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	105 - 202	1.3e-17	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	561
AfaI	GTAC	2 cut(s)	394, 433
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	174, 652
AhlI	ACTAGT	1 cut(s)	665
AluBI	AGCT	9 cut(s)	22, 132, 146, 156, 164, 441, 506, 533, 553
AluI	AGCT	9 cut(s)	22, 132, 146, 156, 164, 441, 506, 533, 553
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	415, 561
ApeKI	GCWGC	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
Asp700I	GAANNNNTTC	1 cut(s)	524
AsuC2I	CCSGG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	116, 664
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	4 cut(s)	422, 468, 485, 666
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	565
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	3 cut(s)	97, 254, 400
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	35, 194
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	3 cut(s)	32, 156, 428
BseNI	ACTGG	3 cut(s)	97, 254, 400
BseX3I	CGGCCG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	302
Bsh1285I	CGRYCG	2 cut(s)	71, 564
BshFI	GGCC	2 cut(s)	417, 563
BsiEI	CGRYCG	2 cut(s)	71, 564
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	560, 564
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	417, 563
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	68, 297
BspANI	GGCC	2 cut(s)	417, 563
BspCNI	CTCAG	3 cut(s)	31, 157, 429
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	97, 254, 400
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	2 cut(s)	68, 297
Bst4CI	ACNGT	2 cut(s)	204, 214
BstC8I	GCNNGC	2 cut(s)	24, 589
BstDEI	CTNAG	6 cut(s)	18, 152, 165, 428, 437, 546
BstF5I	GGATG	2 cut(s)	35, 194
BstKTI	GATC	2 cut(s)	71, 300
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	68, 297
BstMCI	CGRYCG	2 cut(s)	71, 564
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	417, 563
BtsCI	GGATG	2 cut(s)	35, 194
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	4 cut(s)	210, 434, 501, 589
Cac8I	GCNNGC	2 cut(s)	24, 589
Csp6I	GTAC	2 cut(s)	393, 432
CviAII	CATG	2 cut(s)	78, 592
CviQI	GTAC	2 cut(s)	393, 432
DdeI	CTNAG	6 cut(s)	18, 152, 165, 428, 437, 546
DpnI	GATC	2 cut(s)	70, 299
DpnII	GATC	2 cut(s)	68, 297
EaeI	YGGCCR	1 cut(s)	561
EagI	CGGCCG	1 cut(s)	561
EclXI	CGGCCG	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	338
Eco52I	CGGCCG	1 cut(s)	561
FaeI	CATG	2 cut(s)	81, 595
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	77, 591
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	22, 181
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	4 cut(s)	422, 468, 485, 666
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	417, 563
HapII	CCGG	2 cut(s)	560, 564
Hin1II	CATG	2 cut(s)	81, 595
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	560, 564
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	372, 517, 624
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	428, 681
HpyCH4III	ACNGT	2 cut(s)	204, 214
HpyCH4V	TGCA	1 cut(s)	591
HpyF3I	CTNAG	6 cut(s)	18, 152, 165, 428, 437, 546
Hsp92II	CATG	2 cut(s)	81, 595
Kzo9I	GATC	2 cut(s)	68, 297
LpnPI	CCDG	9 cut(s)	110, 156, 192, 267, 381, 502, 573, 577, 609
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	4 cut(s)	422, 468, 485, 666
MalI	GATC	2 cut(s)	70, 299
MboI	GATC	2 cut(s)	68, 297
MboII	GAAGA	3 cut(s)	275, 505, 532
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	2 cut(s)	50, 647
MnlI	CCTC	7 cut(s)	160, 253, 341, 413, 451, 620, 648
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	3 cut(s)	111, 389, 443
MspA1I	CMGCKG	2 cut(s)	164, 506
MspI	CCGG	2 cut(s)	560, 564
MspR9I	CCNGG	1 cut(s)	565
Mva1269I	GAATGC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	565
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	2 cut(s)	68, 297
NlaIII	CATG	2 cut(s)	81, 595
NspI	RCATGY	1 cut(s)	595
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	297
PvuI	CGATCG	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	164, 506
RsaI	GTAC	2 cut(s)	394, 433
RsaNI	GTAC	2 cut(s)	393, 432
SaqAI	TTAA	3 cut(s)	111, 389, 443
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	68, 297
ScaI	AGTACT	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	252
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	2 cut(s)	50, 647
SspMI	CTAG	4 cut(s)	422, 468, 485, 666
StyD4I	CCNGG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	204, 214
TaqI	TCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	50, 647
TatI	WGTACW	2 cut(s)	392, 431
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	111, 389, 443
Tru9I	TTAA	3 cut(s)	111, 389, 443
TscAI	CASTG	4 cut(s)	217, 441, 501, 589
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	234, 597, 663
TspRI	CASTG	4 cut(s)	217, 441, 501, 589
XceI	RCATGY	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	4 cut(s)	422, 468, 485, 666
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.