Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Forward (+)

20713501 .. 20714476

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGCAGCAACGACTTCGCAGCTCTCATGCTTCTCTGCTATGAATCGCCACCTCAACCTCCCCAGACATTCGCTCCTTTGCCCAACCATTCTTCGTCCCAAGTCCTTGTCAACTACTGTTATGAGTCTTGAAGGCGGTTCCAAGACCAAGACTAGTTTAAGTTACACTAGCGATGCACCAAAAGCAAAGTCGGATCCCCTTTTAGATGATGAACAAATTGCTGAACCGAAAAGAGCGGCCAAGATTCATGATTTCTGTTTCGGCATTCCATTTGGCGGGATTGTTCTAAGTGGTGGACTTATTGGCTTCATCTTTTCTAGAAATCCTGCCACTTTGAGCACTGGCGTCTTGTATGGAGCAGCATTGCTAGCCCTTAGTACCTTCAGCTTGAAGATCTGGAGGCAAGGAAAATCCAGTTTACCCTTCATTCTAGGGCAAGCAGCTTTGGCGGCAGTCCTCCTGTGGAAGCACGTTCAGACCTACTCATTGACGAAGAAAGTATTTCCAACAGGCTTCTATGCTGTCATCAGTGCAGCAATGTTATGCTTCTATTCATATGTCGTCCTGTCTGGAGGAAACCCACCACCGAAGAAGTTGAAGCCATCTGCAAGTGTTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

209

Amino Acids

22.14

Weight (kDa)

9.83

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	239
AciI	CCGC	4 cut(s)	138, 239, 279, 452
AclWI	GGATC	2 cut(s)	191, 204
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	134, 394, 601
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	3 cut(s)	25, 390, 446
AluI	AGCT	3 cut(s)	25, 390, 446
Alw21I	GWGCWC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	191, 204
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	6 cut(s)	5, 8, 22, 362, 443, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuNHI	GCTAGC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	6 cut(s)	17, 20, 34, 374, 455, 548
BccI	CCATC	1 cut(s)	613
BcgI	CGANNNNNNTGC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	5 cut(s)	156, 171, 321, 371, 434
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	8 cut(s)	6, 9, 23, 240, 363, 444, 453, 537
BlsI	GCNGC	8 cut(s)	7, 10, 24, 241, 364, 445, 454, 538
BmiI	GGNNCC	2 cut(s)	142, 198
BmsI	GCATC	1 cut(s)	166
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	2 cut(s)	421, 594
BsaHI	GRCGYC	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	349, 417
Bse3DI	GCAATG	2 cut(s)	365, 546
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	2 cut(s)	365, 546
BseNI	ACTGG	2 cut(s)	349, 417
BseXI	GCAGC	6 cut(s)	17, 20, 34, 374, 455, 548
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	196, 396
BspACI	CCGC	4 cut(s)	138, 239, 279, 452
BspANI	GGCC	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	142, 198
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	191, 204
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	365, 546
BsrI	ACTGG	2 cut(s)	349, 417
BssMI	GATC	2 cut(s)	196, 396
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	372, 441
BstDEI	CTNAG	2 cut(s)	290, 377
BstKTI	GATC	2 cut(s)	199, 399
BstMBI	GATC	2 cut(s)	196, 396
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 371, 449, 452, 617
BstV1I	GCAGC	6 cut(s)	17, 20, 34, 374, 455, 548
BstX2I	RGATCY	2 cut(s)	196, 396
BstYI	RGATCY	2 cut(s)	196, 396
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	342, 538
Cac8I	GCNNGC	2 cut(s)	372, 441
CciI	TCATGA	1 cut(s)	250
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	2 cut(s)	30, 251
CviJI	RGCY	8 cut(s)	25, 242, 309, 374, 390, 446, 516, 604
CviKI_1	RGCY	8 cut(s)	25, 242, 309, 374, 390, 446, 516, 604
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	290, 377
DpnI	GATC	2 cut(s)	198, 398
DpnII	GATC	2 cut(s)	196, 396
EaeI	YGGCCR	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	370
FaeI	CATG	2 cut(s)	33, 254
FaiI	YATR	9 cut(s)	31, 44, 125, 252, 357, 522, 547, 559, 561
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	29, 250
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	8 cut(s)	6, 9, 23, 240, 363, 444, 453, 537
Fsp4HI	GCNGC	8 cut(s)	6, 9, 23, 240, 363, 444, 453, 537
FspBI	CTAG	5 cut(s)	156, 171, 321, 371, 434
GluI	GCNGC	8 cut(s)	6, 9, 23, 240, 363, 444, 453, 537
GsuI	CTGGAG	2 cut(s)	421, 594
HaeIII	GGCC	1 cut(s)	242
HgaI	GACGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	33, 254
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	46, 127, 247
Hpy166II	GTNNAC	3 cut(s)	114, 299, 422
Hpy188I	TCNGA	2 cut(s)	196, 480
Hpy188III	TCNNGA	6 cut(s)	131, 251, 321, 400, 573, 624
Hpy8I	GTNNAC	3 cut(s)	114, 299, 422
HpyAV	CCTTC	3 cut(s)	128, 394, 436
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	4 cut(s)	179, 536, 611, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 371, 449, 452, 617
HpyF3I	CTNAG	2 cut(s)	290, 377
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	33, 254
Kzo9I	GATC	2 cut(s)	196, 396
LmnI	GCTCC	2 cut(s)	81, 359
LpnPI	CCDG	9 cut(s)	79, 330, 342, 385, 430, 476, 498, 558, 581
Lsp1109I	GCAGC	6 cut(s)	17, 20, 34, 374, 455, 548
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	5 cut(s)	156, 171, 321, 371, 434
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	198, 398
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	2 cut(s)	196, 396
MboII	GAAGA	4 cut(s)	86, 406, 508, 604
MflI	RGATCY	2 cut(s)	196, 396
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	174, 533
MnlI	CCTC	5 cut(s)	65, 71, 396, 470, 569
MseI	TTAA	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	267
MwoI	GCNNNNNNNGC	5 cut(s)	185, 371, 449, 452, 617
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	196, 396
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	33, 254
NlaIV	GGNNCC	2 cut(s)	142, 198
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	46, 247
PkrI	GCNGC	8 cut(s)	7, 10, 24, 241, 364, 445, 454, 538
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	142, 198
PsuI	RGATCY	2 cut(s)	196, 396
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	8 cut(s)	6, 9, 23, 240, 363, 444, 453, 537
Sau3AI	GATC	2 cut(s)	196, 396
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	8 cut(s)	27, 57, 63, 386, 392, 448, 477, 485
SfaNI	GCATC	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	138, 239, 279, 452
SspMI	CTAG	5 cut(s)	156, 171, 321, 371, 434
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	477
TasI	AATT	1 cut(s)	219
TauI	GCSGC	2 cut(s)	242, 455
TfiI	GAWTC	2 cut(s)	46, 247
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	349, 538
TseI	GCWGC	6 cut(s)	5, 8, 22, 362, 443, 536
TspDTI	ATGAA	6 cut(s)	59, 228, 239, 301, 418, 546
TspRI	CASTG	2 cut(s)	349, 538
XbaI	TCTAGA	1 cut(s)	320
XspI	CTAG	5 cut(s)	156, 171, 321, 371, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.