Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Forward (+)

11590869 .. 11592766

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGAACAATGGCAGCAGGGACAACCTCGCAGCTCTCATGCTTCTCTGCAATGAATCGCCACCTCCATATGTCAAGACATCCCTCAATTCTTTGCACAAGCACTCTTCACCCAAAGTCTTTGTCAAGTCTTGCTATGAACCTTGCAAGCAGTTCAAAGACAAGGATTTGTGCTAGTTACACAGGGGATGCATCCCCTGCAAATTCGGATCCCATTTTAGATGATGAACAAGTTGGACCACCGAAACGAGCAGCCAAGATTCATGATTTCTGTTTCGGGATTCCATTTGGTGGGATGGTTCTGAGTGGTGGACTTCTTGGTTTTGTTTTCTCCAGAAATCCTGCCACACTGGGCACCGGCATCATGTTTGGAGGGGCACTTCTAGCCCTTAGCATCTTTAGCTTAAAGATCTGGAGGCAAGGAAAATCTAGTTTACCCTTCATTGTCGGACAAGCCGCTCTGGCCGTGGTCCTTCTATGGAAAAACCTTCAGACCTACGCAGTGACAAAGAAAGTATTTCCAACAGGCTTTTACGCTGCTGTTAGTGCTGCAATGATCTGCTTCTATTCATATGTCCTTCTCTCTGGAGGAAACCCACCACCAAAGAATCTTAAGACATCAGCGACTGTCGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

213

Amino Acids

22.41

Weight (kDa)

9.84

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	92 - 189	3.6e-16	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	458
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	2 cut(s)	203, 216
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	156
AluBI	AGCT	2 cut(s)	34, 402
AluI	AGCT	2 cut(s)	34, 402
AlwI	GGATC	2 cut(s)	203, 216
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	5 cut(s)	14, 31, 251, 536, 548
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	2 cut(s)	236, 469
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	236, 469
BaeGI	GKGCMC	2 cut(s)	356, 379
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	26, 43, 263, 523, 535
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	449
BfaI	CTAG	3 cut(s)	174, 383, 429
BfrI	CTTAAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	6 cut(s)	15, 32, 252, 456, 537, 549
BlsI	GCNGC	6 cut(s)	16, 33, 253, 457, 538, 550
Bme18I	GGWCC	2 cut(s)	236, 469
BmgT120I	GGNCC	2 cut(s)	236, 469
BmiI	GGNNCC	2 cut(s)	210, 355
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	178, 200, 369, 402
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	3 cut(s)	316, 433, 606
Bpu10I	CCTNAGC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	57, 558
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	4 cut(s)	79, 191, 193, 300
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	57, 558
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	354
BseSI	GKGCMC	2 cut(s)	356, 379
BseXI	GCAGC	5 cut(s)	26, 43, 263, 523, 535
BshFI	GGCC	1 cut(s)	464
BshNI	GGYRCC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	356, 379
Bsp143I	GATC	3 cut(s)	208, 408, 555
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	294
BspHI	TCATGA	2 cut(s)	262, 635
BspLI	GGNNCC	2 cut(s)	210, 355
BspPI	GGATC	2 cut(s)	203, 216
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	57, 558
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	3 cut(s)	208, 408, 555
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	302, 389
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	79, 191, 193, 300
BstKTI	GATC	3 cut(s)	211, 411, 558
BstMBI	GATC	3 cut(s)	208, 408, 555
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 383, 399, 461, 545, 629
BstSLI	GKGCMC	2 cut(s)	356, 379
BstV1I	GCAGC	5 cut(s)	26, 43, 263, 523, 535
BstX2I	RGATCY	2 cut(s)	208, 408
BstYI	RGATCY	2 cut(s)	208, 408
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	4 cut(s)	79, 191, 193, 300
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	347, 507
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	626
CciI	TCATGA	2 cut(s)	262, 635
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	236, 469
CviAII	CATG	4 cut(s)	39, 263, 364, 636
CviJI	RGCY	7 cut(s)	34, 254, 386, 402, 455, 464, 528
CviKI_1	RGCY	7 cut(s)	34, 254, 386, 402, 455, 464, 528
DdeI	CTNAG	2 cut(s)	302, 389
DpnI	GATC	3 cut(s)	210, 410, 557
DpnII	GATC	3 cut(s)	208, 408, 555
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	236, 469
Eco57I	CTGAAG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	4 cut(s)	42, 266, 367, 639
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	38, 262, 363, 635
FauNDI	CATATG	2 cut(s)	69, 571
Fnu4HI	GCNGC	6 cut(s)	15, 32, 252, 456, 537, 549
FokI	GGATG	4 cut(s)	66, 178, 200, 307
Fsp4HI	GCNGC	6 cut(s)	15, 32, 252, 456, 537, 549
FspBI	CTAG	3 cut(s)	174, 383, 429
GluI	GCNGC	6 cut(s)	15, 32, 252, 456, 537, 549
GsuI	CTGGAG	3 cut(s)	316, 433, 606
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	4 cut(s)	42, 266, 367, 639
HinfI	GANTC	4 cut(s)	55, 259, 280, 607
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	311, 434
Hpy188I	TCNGA	4 cut(s)	208, 303, 449, 492
Hpy188III	TCNNGA	7 cut(s)	75, 263, 277, 333, 412, 585, 636
Hpy8I	GTNNAC	2 cut(s)	311, 434
HpyAV	CCTTC	4 cut(s)	448, 482, 497, 587
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	6 cut(s)	50, 96, 146, 191, 200, 551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 383, 399, 461, 545, 629
HpyF3I	CTNAG	2 cut(s)	302, 389
Hsp92II	CATG	4 cut(s)	42, 266, 367, 639
Kzo9I	GATC	3 cut(s)	208, 408, 555
Lsp1109I	GCAGC	5 cut(s)	26, 43, 263, 523, 535
LweI	GCATC	4 cut(s)	178, 200, 369, 402
MaeI	CTAG	3 cut(s)	174, 383, 429
MaeIII	GTNAC	2 cut(s)	176, 502
MalI	GATC	3 cut(s)	210, 410, 557
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	3 cut(s)	208, 408, 555
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	2 cut(s)	208, 408
MhlI	GDGCHC	2 cut(s)	356, 379
MluCI	AATT	2 cut(s)	87, 202
MmeI	TCCRAC	3 cut(s)	214, 427, 545
MnlI	CCTC	6 cut(s)	37, 74, 94, 365, 408, 581
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	404, 612
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	6 cut(s)	197, 383, 399, 461, 545, 629
NdeI	CATATG	2 cut(s)	69, 571
NdeII	GATC	3 cut(s)	208, 408, 555
NlaIII	CATG	4 cut(s)	42, 266, 367, 639
NlaIV	GGNNCC	2 cut(s)	210, 355
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	193
PagI	TCATGA	2 cut(s)	262, 635
PfeI	GAWTC	4 cut(s)	55, 259, 280, 607
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	6 cut(s)	16, 33, 253, 457, 538, 550
PspN4I	GGNNCC	2 cut(s)	210, 355
PspPI	GGNCC	2 cut(s)	236, 469
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	208, 408
SaqAI	TTAA	2 cut(s)	404, 612
SatI	GCNGC	6 cut(s)	15, 32, 252, 456, 537, 549
Sau3AI	GATC	3 cut(s)	208, 408, 555
Sau96I	GGNCC	2 cut(s)	236, 469
SduI	GDGCHC	2 cut(s)	356, 379
SetI	ASST	7 cut(s)	29, 36, 66, 144, 404, 489, 497
SfaNI	GCATC	4 cut(s)	178, 200, 369, 402
SinI	GGWCC	2 cut(s)	236, 469
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	2 cut(s)	87, 202
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	3 cut(s)	174, 383, 429
TaaI	ACNGT	1 cut(s)	628
TasI	AATT	2 cut(s)	87, 202
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	4 cut(s)	55, 259, 280, 607
Tru1I	TTAA	2 cut(s)	404, 612
Tru9I	TTAA	2 cut(s)	404, 612
TscAI	CASTG	2 cut(s)	354, 507
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	5 cut(s)	14, 31, 251, 536, 548
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	6 cut(s)	68, 152, 240, 251, 430, 558
TspRI	CASTG	2 cut(s)	354, 507
Van91I	CCANNNNNTGG	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	236, 469
XapI	RAATTY	1 cut(s)	202
XspI	CTAG	3 cut(s)	174, 383, 429
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.