Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Forward (+)

13151363 .. 13151992

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCGCAGCGACGACTTCACAGCTCTCATGCTTCTCTGCCATGAATTGCCAGCTCCACCTCTTGAGACGTGCACTCCTTTGCCCAACCACTGCTCATCCCAAGTCTTTGTCGCTTGTTATCATGAGTCTTGAAGGTGGTTCCAAGACCAAGACTAATTTGAGTTACACAAGCGATGCATCAAAAGCAAAGTCGGATCCCATTTTAGATGATGAACTTGTTGCTCAGCCGAAGAGAGCAGCCAAGATTCATGATTTCTGTTTTGGGATTCCATTTGGCGGGATTGTTCTAGGTAGTGGACTTACTGGATTTATCTTTTCCAGAAATCCTGCCACTTTGAGCTCTGGTGTGCTGTTTGGTGGGGCATTGCTAGCCCTTAGCACCTTTAGCTTAAAGATCTGGAGGCAGGGAAAGTCCAGTTTACCGTTCATTCTAGGACAAGCAACTTTGGCGGCAGTCCTCCTGTGGAATAACTTTCAGACTTACGCATTGACGAAGAAAGTATTTCCAACAGGCTGCTATGCTGCCATTAGTGCTGCAATGTTATGCTTCTATTCATATGTCGTCCTCAGTGGAGGAAACCCGCCACCAAAGAAGTTGAGGCCATCTGCAAGTGCTGCATCGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

210

Amino Acids

22.07

Weight (kDa)

9.7

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	88 - 185	9.4e-15	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	6, 279, 452, 584
AclWI	GGATC	2 cut(s)	191, 204
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	134
AjiI	CACGTC	1 cut(s)	71
AluBI	AGCT	4 cut(s)	25, 55, 342, 390
AluI	AGCT	4 cut(s)	25, 55, 342, 390
Alw21I	GWGCWC	2 cut(s)	76, 344
Alw26I	GTCTC	1 cut(s)	61
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	191, 204
AoxI	GGCC	2 cut(s)	3, 602
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	6 cut(s)	8, 239, 516, 524, 536, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuNHI	GCTAGC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	2 cut(s)	76, 344
BbvI	GCAGC	6 cut(s)	20, 251, 503, 511, 523, 604
BccI	CCATC	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	290, 371, 434
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	8 cut(s)	6, 9, 240, 453, 517, 525, 537, 618
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	8 cut(s)	7, 10, 241, 454, 518, 526, 538, 619
BmgBI	CACGTC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	142, 198
BmsI	GCATC	2 cut(s)	166, 188
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	310, 417
Bse3DI	GCAATG	2 cut(s)	365, 546
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	2 cut(s)	365, 546
BseMII	CTCAG	2 cut(s)	239, 583
BseNI	ACTGG	2 cut(s)	310, 417
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	6 cut(s)	20, 251, 503, 511, 523, 604
BshFI	GGCC	2 cut(s)	5, 604
BsiHKAI	GWGCWC	2 cut(s)	76, 344
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	5, 604
Bsp1286I	GDGCHC	2 cut(s)	76, 344
Bsp143I	GATC	2 cut(s)	196, 396
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	4 cut(s)	6, 279, 452, 584
BspANI	GGCC	2 cut(s)	5, 604
BspCNI	CTCAG	2 cut(s)	238, 582
BspHI	TCATGA	2 cut(s)	123, 250
BspLI	GGNNCC	2 cut(s)	142, 198
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	191, 204
BsrDI	GCAATG	2 cut(s)	365, 546
BsrI	ACTGG	2 cut(s)	310, 417
BssMI	GATC	2 cut(s)	196, 396
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	53, 372
BstDEI	CTNAG	3 cut(s)	225, 377, 569
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	199, 399
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	196, 396
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 371, 387, 449, 533, 617
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	6 cut(s)	20, 251, 503, 511, 523, 604
BstX2I	RGATCY	2 cut(s)	196, 396
BstYI	RGATCY	2 cut(s)	196, 396
BsuRI	GGCC	2 cut(s)	5, 604
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 577
Cac8I	GCNNGC	2 cut(s)	53, 372
CciI	TCATGA	2 cut(s)	123, 250
CviAII	CATG	4 cut(s)	30, 43, 124, 251
DdeI	CTNAG	3 cut(s)	225, 377, 569
DpnI	GATC	2 cut(s)	198, 398
DpnII	GATC	2 cut(s)	196, 396
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	4 cut(s)	33, 46, 127, 254
FaiI	YATR	9 cut(s)	31, 44, 125, 252, 522, 547, 559, 561, 628
FatI	CATG	4 cut(s)	29, 42, 123, 250
FauI	CCCGC	2 cut(s)	272, 591
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	8 cut(s)	6, 9, 240, 453, 517, 525, 537, 618
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	8 cut(s)	6, 9, 240, 453, 517, 525, 537, 618
FspBI	CTAG	3 cut(s)	290, 371, 434
GluI	GCNGC	8 cut(s)	6, 9, 240, 453, 517, 525, 537, 618
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	5, 604
Hin1II	CATG	4 cut(s)	33, 46, 127, 254
HinfI	GANTC	3 cut(s)	127, 247, 268
Hpy166II	GTNNAC	3 cut(s)	74, 299, 422
Hpy188I	TCNGA	2 cut(s)	196, 480
Hpy188III	TCNNGA	6 cut(s)	64, 124, 131, 251, 321, 400
Hpy8I	GTNNAC	3 cut(s)	74, 299, 422
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	74, 179, 539, 611, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 371, 387, 449, 533, 617
HpyF3I	CTNAG	3 cut(s)	225, 377, 569
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	33, 46, 127, 254
Kzo9I	GATC	2 cut(s)	196, 396
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	6 cut(s)	20, 251, 503, 511, 523, 604
LweI	GCATC	2 cut(s)	166, 188
MaeI	CTAG	3 cut(s)	290, 371, 434
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	198, 398
MboI	GATC	2 cut(s)	196, 396
MboII	GAAGA	2 cut(s)	244, 508
MflI	RGATCY	2 cut(s)	196, 396
MhlI	GDGCHC	2 cut(s)	76, 344
MluCI	AATT	2 cut(s)	46, 157
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	174, 533
MnlI	CCTC	6 cut(s)	71, 396, 470, 569, 578, 594
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	1 cut(s)	392
MwoI	GCNNNNNNNGC	6 cut(s)	185, 371, 387, 449, 533, 617
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	196, 396
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	4 cut(s)	33, 46, 127, 254
NlaIV	GGNNCC	2 cut(s)	142, 198
NsiI	ATGCAT	1 cut(s)	181
PagI	TCATGA	2 cut(s)	123, 250
PfeI	GAWTC	2 cut(s)	247, 268
PkrI	GCNGC	8 cut(s)	7, 10, 241, 454, 518, 526, 538, 619
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	142, 198
PsuI	RGATCY	2 cut(s)	196, 396
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	8 cut(s)	6, 9, 240, 453, 517, 525, 537, 618
Sau3AI	GATC	2 cut(s)	196, 396
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	76, 344
SetI	ASST	9 cut(s)	27, 57, 63, 73, 139, 295, 344, 386, 392
SfaNI	GCATC	2 cut(s)	166, 188
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	46, 157
SsiI	CCGC	4 cut(s)	6, 279, 452, 584
SspMI	CTAG	3 cut(s)	290, 371, 434
SstI	GAGCTC	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	1 cut(s)	73
TasI	AATT	2 cut(s)	46, 157
TauI	GCSGC	2 cut(s)	8, 455
TfiI	GAWTC	2 cut(s)	247, 268
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	97, 577
TseI	GCWGC	6 cut(s)	8, 239, 516, 524, 536, 617
TspDTI	ATGAA	5 cut(s)	59, 228, 239, 418, 546
TspRI	CASTG	2 cut(s)	97, 577
VneI	GTGCAC	1 cut(s)	72
XspI	CTAG	3 cut(s)	290, 371, 434
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.