Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Forward (+)

45037750 .. 45039667

Gene Structure 1918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGAACAATGGCAGCAGGGACAACCTTGCAGCTCTCGTGCTTCTCTGCAATGAATCGCCACCTCCACCTCTCAAGACGTCCTTCACTCCTTTGCACAAGCACTCTTCGCCCAAAGTCTCTGTCTATTCTTGCTATGAGTCTTGAAAGCGGTTCAAAGACCAAGATTAGTGCTAGTTACACAGGGGATGCATCACCTGCAAAGTCGGATCCCATTTTAGATGATGATCAAGTTGTTCAACCGAAACGTGCAGCCAAGATTCATGATTTCTGTTTCGGAATTCCATTTGGTGGGATGGTTCTGAGTGGTGGACTTCTTGGTTTTGTTTTCACCAGAAATCCTGCCACACTGGGATCCGGCATCCTGTTTGGAGGGGCATTGCTAGCCCTTAGCATCTTTAGCTTAAAGATCTGGAGGCAAGGAAAATCCAGTTTACCCTTCATTGTAGGACAAGCCGCTTTGGCTGCGGTTCTTCTATGGAAAAACCTTCAGACCTACGCAGTGACAAAGAAGGTGTTTCCTACAGGATTTTATGCTGCTGTTAGTGCTGCAATGATCTGCTTCTATTCATATGTCCTTCTCTCTGGAGGAAACCCACCGCCAAAGAAGTTGAAGACATCGGCAACTGTCGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

212

Amino Acids

22.48

Weight (kDa)

10.07

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	92 - 189	1.5e-16	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
AatII	GACGTC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	4 cut(s)	150, 456, 467, 599
AclWI	GGATC	4 cut(s)	203, 216, 348, 361
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	146, 156, 239, 613
AluBI	AGCT	2 cut(s)	34, 402
AluI	AGCT	2 cut(s)	34, 402
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	203, 216, 348, 361
ApeKI	GCWGC	6 cut(s)	14, 31, 251, 464, 536, 548
ApoI	RAATTY	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsuHPI	GGTGA	2 cut(s)	186, 322
AsuNHI	GCTAGC	1 cut(s)	382
BamHI	GGATCC	2 cut(s)	208, 353
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	6 cut(s)	26, 43, 263, 451, 523, 535
BccI	CCATC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	174, 383
BfmI	CTRYAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	7 cut(s)	15, 32, 252, 456, 465, 537, 549
BlsI	GCNGC	7 cut(s)	16, 33, 253, 457, 466, 538, 550
BmiI	GGNNCC	2 cut(s)	210, 355
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	178, 200, 369, 402
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	2 cut(s)	433, 606
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	354, 429
Bse3DI	GCAATG	3 cut(s)	57, 377, 558
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	3 cut(s)	193, 300, 360
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	3 cut(s)	57, 377, 558
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	354, 429
BseXI	GCAGC	6 cut(s)	26, 43, 263, 451, 523, 535
BsgI	GTGCAG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	208, 226, 353, 408, 555
BspACI	CCGC	4 cut(s)	150, 456, 467, 599
BspCNI	CTCAG	1 cut(s)	294
BspHI	TCATGA	2 cut(s)	262, 635
BspLI	GGNNCC	2 cut(s)	210, 355
BspMI	ACCTGC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	4 cut(s)	203, 216, 348, 361
BsrDI	GCAATG	3 cut(s)	57, 377, 558
BsrI	ACTGG	2 cut(s)	354, 429
BssMI	GATC	5 cut(s)	208, 226, 353, 408, 555
BssNI	GRCGYC	1 cut(s)	79
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	302, 389
BstF5I	GGATG	3 cut(s)	193, 300, 360
BstKTI	GATC	5 cut(s)	211, 229, 356, 411, 558
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	5 cut(s)	208, 226, 353, 408, 555
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 197, 383, 399, 461, 464, 545, 629
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	6 cut(s)	26, 43, 263, 451, 523, 535
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	3 cut(s)	208, 353, 408
BstYI	RGATCY	3 cut(s)	208, 353, 408
BtsCI	GGATG	3 cut(s)	193, 300, 360
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	347, 507
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	2 cut(s)	262, 635
CviAII	CATG	2 cut(s)	263, 636
CviJI	RGCY	6 cut(s)	34, 254, 386, 402, 455, 464
CviKI_1	RGCY	6 cut(s)	34, 254, 386, 402, 455, 464
DdeI	CTNAG	2 cut(s)	302, 389
DpnI	GATC	5 cut(s)	210, 228, 355, 410, 557
DpnII	GATC	5 cut(s)	208, 226, 353, 408, 555
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	2 cut(s)	266, 639
FaiI	YATR	7 cut(s)	137, 264, 478, 534, 571, 573, 637
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	262, 635
FauNDI	CATATG	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	7 cut(s)	15, 32, 252, 456, 465, 537, 549
FokI	GGATG	3 cut(s)	200, 307, 347
Fsp4HI	GCNGC	7 cut(s)	15, 32, 252, 456, 465, 537, 549
FspBI	CTAG	2 cut(s)	174, 383
GluI	GCNGC	7 cut(s)	15, 32, 252, 456, 465, 537, 549
GsuI	CTGGAG	2 cut(s)	433, 606
HapII	CCGG	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	266, 639
HinfI	GANTC	3 cut(s)	55, 139, 259
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	186, 322
Hpy166II	GTNNAC	2 cut(s)	311, 434
Hpy188I	TCNGA	4 cut(s)	208, 278, 303, 492
Hpy188III	TCNNGA	6 cut(s)	75, 143, 263, 412, 585, 636
Hpy8I	GTNNAC	2 cut(s)	311, 434
HpyAV	CCTTC	5 cut(s)	93, 448, 497, 505, 587
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	2 cut(s)	79, 247
HpyCH4V	TGCA	7 cut(s)	31, 50, 96, 191, 200, 251, 551
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 197, 383, 399, 461, 464, 545, 629
HpyF3I	CTNAG	2 cut(s)	302, 389
HpySE526I	ACGT	2 cut(s)	79, 247
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	266, 639
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	208, 226, 353, 408, 555
Lsp1109I	GCAGC	6 cut(s)	26, 43, 263, 451, 523, 535
LweI	GCATC	4 cut(s)	178, 200, 369, 402
MaeI	CTAG	2 cut(s)	174, 383
MaeII	ACGT	2 cut(s)	79, 247
MaeIII	GTNAC	2 cut(s)	176, 502
MalI	GATC	5 cut(s)	210, 228, 355, 410, 557
MboI	GATC	5 cut(s)	208, 226, 353, 408, 555
MboII	GAAGA	3 cut(s)	98, 464, 625
MflI	RGATCY	3 cut(s)	208, 353, 408
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	74, 80, 365, 408, 581
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	404
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	8 cut(s)	108, 197, 383, 399, 461, 464, 545, 629
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	5 cut(s)	208, 226, 353, 408, 555
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	266, 639
NlaIV	GGNNCC	2 cut(s)	210, 355
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	193
PagI	TCATGA	2 cut(s)	262, 635
PaqCI	CACCTGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	55, 259
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	7 cut(s)	16, 33, 253, 457, 466, 538, 550
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	210, 355
PsuI	RGATCY	3 cut(s)	208, 353, 408
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	7 cut(s)	15, 32, 252, 456, 465, 537, 549
Sau3AI	GATC	5 cut(s)	208, 226, 353, 408, 555
SchI	GAGTC	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	178, 200, 369, 402
SfcI	CTRYAG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	150, 456, 467, 599
SspMI	CTAG	2 cut(s)	174, 383
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	2 cut(s)	82, 250
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	55, 259
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	354, 507
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	6 cut(s)	14, 31, 251, 464, 536, 548
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	68, 251, 430, 558
TspRI	CASTG	2 cut(s)	354, 507
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	2 cut(s)	174, 383
ZraI	GACGTC	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.