Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308743.1

Orthogroup ID

OG0015843

Physical Location & Seq

Genomic Coordinates Reverse (-)

519 .. 863

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggttctgagtggtggacttcttggttttgttttcaccagaaatcctgccacactgggatccggcatcctgtttggaggggcattgctagcacttagcatctttagcttaaagatctggaggcaaggaaaatccagtttacccttcattgtaggacaagccgctttggctgcggttcttctatggaaaaaccttcagacctacgcagtgacaaagaaggtgtttccaacaggattttatgctgctgttagtgctgcaatgatctgcttctattcatatgtccttctctctggaggaaacccgccgccaaagaagttgaagacatcagcaactgtcgcatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009555 GO:0009653 GO:0009664 GO:0009706 GO:0009832 GO:0009941 GO:0009987 GO:0010208 GO:0010876 GO:0010927 GO:0015075 GO:0015245 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016043 GO:0019866 GO:0022607 GO:0022857 GO:0030198 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034220 GO:0042170 GO:0042546 GO:0042592 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046942 GO:0046943 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0051179 GO:0051234 GO:0055085 GO:0055088 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071702 GO:0071840 GO:0085029 GO:0098656 GO:1902001 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

114

Amino Acids

11.96

Weight (kDa)

10.3

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57280
fragaria_vesca	FvH4_7g12800 FvH4_7g12800
prunus_persica	Prupe.2G152500_v2.0.a1
pyrus_communis	pycom07g11840
rosa_chinensis	RchiOBHm_Chr1g0351831
rosa_multiflora	Rmu_co8308743.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303500
rosa_rugosa	Rorug01G0222000 Rorug01G0222100
rosa_samantha	Rh1AG236000 Rh1BG206500 Rh1CG220500 Rh1DG233500
rosa_wichuraiana	Rw1G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	162, 173, 302, 305
AclWI	GGATC	2 cut(s)	54, 67
AcuI	CTGAAG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
AlwI	GGATC	2 cut(s)	54, 67
AlwNI	CAGNNNCTG	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	170, 242, 254
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	157, 229, 241
BfaI	CTAG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	5 cut(s)	162, 171, 243, 255, 305
BlsI	GCNGC	5 cut(s)	163, 172, 244, 256, 306
BmiI	GGNNCC	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	75, 108
BmtI	GCTAGC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	139, 312
Bse1I	ACTGG	2 cut(s)	60, 135
Bse3DI	GCAATG	2 cut(s)	83, 264
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	83, 264
BseNI	ACTGG	2 cut(s)	60, 135
BseXI	GCAGC	3 cut(s)	157, 229, 241
BsiSI	CCGG	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	59, 114, 261
BspACI	CCGC	4 cut(s)	162, 173, 302, 305
BspHI	TCATGA	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	54, 67
BsrDI	GCAATG	2 cut(s)	83, 264
BsrI	ACTGG	2 cut(s)	60, 135
BssMI	GATC	3 cut(s)	59, 114, 261
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	8, 95
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	62, 117, 264
BstMBI	GATC	3 cut(s)	59, 114, 261
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 105, 167, 170, 251, 335
BstV1I	GCAGC	3 cut(s)	157, 229, 241
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	2 cut(s)	59, 114
BstYI	RGATCY	2 cut(s)	59, 114
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	53, 213
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	341
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	3 cut(s)	108, 161, 170
CviKI_1	RGCY	3 cut(s)	108, 161, 170
DdeI	CTNAG	2 cut(s)	8, 95
DpnI	GATC	3 cut(s)	61, 116, 263
DpnII	GATC	3 cut(s)	59, 114, 261
Eco57I	CTGAAG	1 cut(s)	179
FaeI	CATG	1 cut(s)	345
FaiI	YATR	5 cut(s)	184, 240, 277, 279, 343
FatI	CATG	1 cut(s)	341
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	162, 171, 243, 255, 305
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	162, 171, 243, 255, 305
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	5 cut(s)	162, 171, 243, 255, 305
GsuI	CTGGAG	2 cut(s)	139, 312
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	345
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	17, 140
Hpy188I	TCNGA	2 cut(s)	9, 198
Hpy188III	TCNNGA	3 cut(s)	118, 291, 342
Hpy8I	GTNNAC	2 cut(s)	17, 140
HpyAV	CCTTC	4 cut(s)	154, 203, 211, 293
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 105, 167, 170, 251, 335
HpyF3I	CTNAG	2 cut(s)	8, 95
Hsp92II	CATG	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	59, 114, 261
LpnPI	CCDG	9 cut(s)	41, 52, 60, 76, 83, 103, 148, 216, 276
Lsp1109I	GCAGC	3 cut(s)	157, 229, 241
LweI	GCATC	2 cut(s)	75, 108
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	61, 116, 263
MboI	GATC	3 cut(s)	59, 114, 261
MboII	GAAGA	2 cut(s)	170, 331
MflI	RGATCY	2 cut(s)	59, 114
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	71, 114, 287
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	89, 105, 167, 170, 251, 335
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	59, 114, 261
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	163, 172, 244, 256, 306
PspN4I	GGNNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	59, 114
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	5 cut(s)	162, 171, 243, 255, 305
Sau3AI	GATC	3 cut(s)	59, 114, 261
SetI	ASST	4 cut(s)	110, 195, 203, 222
SfaNI	GCATC	2 cut(s)	75, 108
SsiI	CCGC	4 cut(s)	162, 173, 302, 305
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	334
TauI	GCSGC	2 cut(s)	164, 307
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	60, 213
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	170, 242, 254
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	136, 264
TspRI	CASTG	2 cut(s)	60, 213
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.