AT3G57400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012276
Physical Location & Seq
Forward (+)
21238223 .. 21240228
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57400.1

Sequence Viewer

Length: 1425 bp
ATGGGTTTGATATCAGCGAAAGAGACGAAGAACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACAACAACGACGACTCTCCTTCTTCTTCTTCTTCTTCTCCGGCAACAACAACTCTCTTCCGCTCCAGATCTTCTCGTCTTCTCCTCTCCAAAGCTCAATCCACAATCTCAATCTGCATCCTCCTCCTCTTCCTCACTCTCTTCCTCTTCACTCTCTCCACCTTCGAACCTTCCTCTGGCTTTCCCGCCGTTTCTTCTTCTCGTCCTCACCGTCGATTTCTCCTCAACCGCGACATCTCCGCCTCTTCTGAATCTCGTCGTCGTTATAACCGATTCGCTCTCCAAGGTATGGGTACTCTGTTTCTCAGAGGAACCAAGAGCATGCACGATTTGATTGTTGTTCATATCTCTTCCGATACTACGGAAGACGATCTCCGTCTCTTCATGCGCTTGATCCACCGCTCCGGTGTCACTTCCAAATCCGACGTCGTTTTACTCTTCAATTCGGGTACGAGATTCACTGAAATGATCGAAGAAGAGAACGACTCGTTCTTAAAACTCGTTGATGTTCATCGGAATTCGTCGAATCAAATCGACTCCGTTTGGGGATTTAATCTCACGAAATTCATGAAGAAGCAATCGAAATCATCATCGTCTGAGCCAATTTGGGGGAAGAAGACGCATCGAGCTAATTACAACGATACGTCGTCGTTGAATAACTCGACCGAGTCAACCGAGTTGTTGACACATGGCTCAGTAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGAGTCAGTCCTCTTCTTCTCTAAACACAGTAGTAGTAGCAAGAAAAGCTCCGAGGTTAATCCGGCGATTCTGATCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGAAGAACTCGGTTACGGAATCGGTGGTGTTGAGCCAACTCGTTGGGAATGTTCACATGACGAAGAATTTTGAAGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAGTTAAGGACGAGAAACTCGGCGGCTTCGTCGATAAAGAATCATGATATAATACAAAGAGGTGGTGGTAATAGTAATAGTAATCATATTATTGATATTATGGCGATTATTATGAAACGTATTTGTTCTTGTGAATTAGATTCTTCTGTTTATAATTACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

474

Amino Acids

52.94

Weight (kDa)

9.7

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7780 PF25002 119 - 410 6.6e-124 Domain of unknown function (DUF7780)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57400 AT5G52500
fragaria_vesca FvH4_6g23940
malus_domestica MD12G1074600.v1.1 MD14G1072700.v1.1
prunus_persica Prupe.7G058900_v2.0.a1
pyrus_communis pycom12g06420 pycom14g06260
rosa_chinensis RchiOBHm_Chr3g0482601
rosa_laevigata RLG00000023338
rosa_multiflora Rmu_sc0000224.1_g000003 Rmu_sc0004687.1_g000003
rosa_roxburghii Rroxscaffold_6G00399090
rosa_rugosa Rorug03G0197500
rosa_samantha Rh3AG248600 Rh3BG284100 Rh3CG281600 Rh3DG277800
rosa_wichuraiana Rw3G022450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 348, 1413
AatII GACGTC 1 cut(s) 510
Acc65I GGTACC 1 cut(s) 1237
AccB1I GGYRCC 1 cut(s) 1237
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 2 cut(s) 144, 483
AccII CGCG 1 cut(s) 312
AciI CCGC 7 cut(s) 142, 267, 310, 321, 481, 956, 1283
AclWI GGATC 4 cut(s) 469, 800, 813, 843
AcsI RAATTY 3 cut(s) 598, 644, 1207
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 3 cut(s) 376, 532, 1239
AfiI CCNNNNNNNGG 3 cut(s) 257, 370, 689
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 4 cut(s) 523, 736, 907, 1214
AjiI CACGTC 1 cut(s) 793
AluBI AGCT 5 cut(s) 176, 710, 1032, 1067, 1092
AluI AGCT 5 cut(s) 176, 710, 1032, 1067, 1092
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 2 cut(s) 17, 464
AlwI GGATC 4 cut(s) 469, 800, 813, 843
ApeKI GCWGC 3 cut(s) 880, 1129, 1132
ApoI RAATTY 3 cut(s) 598, 644, 1207
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
Asp718I GGTACC 1 cut(s) 1237
AspLEI GCGC 1 cut(s) 471
AsuC2I CCSGG 2 cut(s) 826, 964
AsuHPI GGTGA 2 cut(s) 281, 962
AsuII TTCGAA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 1237
BanII GRGCYC 1 cut(s) 1094
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 4 cut(s) 55, 152, 453, 704
Bbv12I GWGCWC 1 cut(s) 1094
BbvI GCAGC 3 cut(s) 867, 1141, 1144
BccI CCATC 1 cut(s) 855
BceAI ACGGC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BcnI CCSGG 2 cut(s) 826, 964
BcoDI GTCTC 2 cut(s) 17, 464
BfaI CTAG 2 cut(s) 39, 884
BglII AGATCT 1 cut(s) 149
BisI GCNGC 4 cut(s) 881, 1130, 1133, 1284
BlsI GCNGC 4 cut(s) 882, 1131, 1134, 1285
Bme1390I CCNGG 2 cut(s) 826, 964
BmgBI CACGTC 1 cut(s) 793
BmiI GGNNCC 4 cut(s) 394, 807, 980, 1239
BmrFI CCNGG 2 cut(s) 826, 964
BmsI GCATC 3 cut(s) 207, 712, 1086
BpiI GAAGAC 4 cut(s) 55, 152, 453, 704
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 1004
BpuMI CCSGG 2 cut(s) 826, 964
BsaBI GATNNNNATC 2 cut(s) 591, 1055
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 364, 946, 1035
BsaWI WCCGGW 3 cut(s) 485, 975, 1240
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 370, 689
Bse1I ACTGG 1 cut(s) 1260
Bse8I GATNNNNATC 2 cut(s) 591, 1055
BseDI CCNNGG 3 cut(s) 364, 946, 1035
BseGI GGATG 1 cut(s) 198
BseJI GATNNNNATC 2 cut(s) 591, 1055
BseLI CCNNNNNNNGG 3 cut(s) 257, 370, 689
BseMII CTCAG 6 cut(s) 400, 669, 789, 789, 1095, 1251
BseNI ACTGG 1 cut(s) 1260
BseRI GAGGAG 4 cut(s) 155, 194, 197, 293
BseXI GCAGC 3 cut(s) 867, 1141, 1144
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 747
BshNI GGYRCC 1 cut(s) 1237
BsiEI CGRYCG 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 1094
BsiSI CCGG 7 cut(s) 122, 486, 825, 964, 976, 1046, 1241
BslI CCNNNNNNNGG 3 cut(s) 257, 370, 689
BsmAI GTCTC 2 cut(s) 17, 464
BsmBI CGTCTC 2 cut(s) 17, 464
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 1094
Bsp143I GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
BspACI CCGC 7 cut(s) 142, 267, 310, 321, 481, 956, 1283
BspCNI CTCAG 6 cut(s) 399, 670, 788, 790, 1096, 1252
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 2 cut(s) 648, 1303
BspLI GGNNCC 4 cut(s) 394, 807, 980, 1239
BspPI GGATC 4 cut(s) 469, 800, 813, 843
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 1237
BsrBI CCGCTC 2 cut(s) 144, 483
BsrI ACTGG 1 cut(s) 1260
BssECI CCNNGG 3 cut(s) 364, 946, 1035
BssMI GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 920
Bst4CI ACNGT 3 cut(s) 293, 1013, 1421
BstACI GRCGYC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 7 cut(s) 58, 386, 678, 775, 798, 1104, 1260
BstEII GGTNACC 1 cut(s) 950
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 8 cut(s) 152, 454, 477, 552, 808, 838, 1059, 1110
BstMAI GTCTC 2 cut(s) 17, 464
BstMBI GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
BstMCI CGRYCG 1 cut(s) 747
BstMWI GCNNNNNNNGC 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 950
BstSCI CCNGG 2 cut(s) 824, 962
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 867, 1141, 1144
BstV2I GAAGAC 4 cut(s) 55, 152, 453, 704
BstX2I RGATCY 2 cut(s) 149, 805
BstXI CCANNNNNNTGG 1 cut(s) 1184
BstYI RGATCY 2 cut(s) 149, 805
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 540, 1101, 1253
Cac8I GCNNGC 1 cut(s) 404
CciI TCATGA 2 cut(s) 648, 1303
CfoI GCGC 1 cut(s) 471
CseI GACGC 3 cut(s) 709, 906, 935
Csp6I GTAC 3 cut(s) 375, 531, 1238
CviAII CATG 6 cut(s) 403, 466, 649, 770, 1198, 1304
CviQI GTAC 3 cut(s) 375, 531, 1238
DdeI CTNAG 7 cut(s) 58, 386, 678, 775, 798, 1104, 1260
DpnI GATC 8 cut(s) 151, 453, 476, 551, 807, 837, 1058, 1109
DpnII GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 1092
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 1094
Eco32I GATATC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 1092
Eco91I GGTNACC 1 cut(s) 950
EcoICRI GAGCTC 1 cut(s) 1092
EcoO65I GGTNACC 1 cut(s) 950
EcoRI GAATTC 1 cut(s) 598
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 1094
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 2 cut(s) 17, 464
FaeI CATG 6 cut(s) 406, 469, 652, 773, 1201, 1307
FatI CATG 6 cut(s) 402, 465, 648, 769, 1197, 1303
FauI CCCGC 2 cut(s) 274, 963
Fnu4HI GCNGC 4 cut(s) 881, 1130, 1133, 1284
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 1094
Fsp4HI GCNGC 4 cut(s) 881, 1130, 1133, 1284
FspBI CTAG 2 cut(s) 39, 884
GlaI GCGC 1 cut(s) 470
GluI GCNGC 4 cut(s) 881, 1130, 1133, 1284
GsuI CTGGAG 1 cut(s) 130
HapII CCGG 7 cut(s) 122, 486, 825, 964, 976, 1046, 1241
HgaI GACGC 3 cut(s) 709, 906, 935
HhaI GCGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 6 cut(s) 406, 469, 652, 773, 1201, 1307
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 2 cut(s) 753, 765
HindII GTYRAC 2 cut(s) 753, 765
HpaII CCGG 7 cut(s) 122, 486, 825, 964, 976, 1046, 1241
HphI GGTGA 2 cut(s) 281, 962
Hpy166II GTNNAC 5 cut(s) 753, 765, 925, 1195, 1253
Hpy188I TCNGA 9 cut(s) 331, 389, 436, 505, 597, 679, 846, 1036, 1056
Hpy188III TCNNGA 7 cut(s) 147, 640, 649, 809, 1078, 1111, 1304
Hpy8I GTNNAC 5 cut(s) 753, 765, 925, 1195, 1253
HpyAV CCTTC 3 cut(s) 111, 253, 261
HpyCH4III ACNGT 3 cut(s) 293, 1013, 1421
HpyCH4IV ACGT 6 cut(s) 507, 725, 792, 840, 912, 1378
HpyCH4V TGCA 3 cut(s) 198, 406, 1099
HpyF10VI GCNNNNNNNGC 1 cut(s) 1029
HpyF3I CTNAG 7 cut(s) 58, 386, 678, 775, 798, 1104, 1260
HpySE526I ACGT 6 cut(s) 507, 725, 792, 840, 912, 1378
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 6 cut(s) 406, 469, 652, 773, 1201, 1307
HspAI GCGC 1 cut(s) 469
KpnI GGTACC 1 cut(s) 1241
Kzo9I GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
LmnI GCTCC 5 cut(s) 149, 488, 978, 1037, 1064
Lsp1109I GCAGC 3 cut(s) 867, 1141, 1144
LweI GCATC 3 cut(s) 207, 712, 1086
MaeI CTAG 2 cut(s) 39, 884
MaeII ACGT 6 cut(s) 507, 725, 792, 840, 912, 1378
MaeIII GTNAC 7 cut(s) 490, 793, 869, 950, 971, 1153, 1219
MalI GATC 8 cut(s) 151, 453, 476, 551, 807, 837, 1058, 1109
MbiI CCGCTC 2 cut(s) 144, 483
MboI GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
MflI RGATCY 2 cut(s) 149, 805
MhlI GDGCHC 1 cut(s) 1094
MluCI AATT 9 cut(s) 523, 598, 644, 684, 712, 901, 1207, 1394, 1414
MlyI GAGTC 6 cut(s) 89, 560, 611, 758, 995, 1238
MmeI TCCRAC 2 cut(s) 528, 783
MseI TTAA 4 cut(s) 575, 633, 1041, 1265
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 7 cut(s) 122, 486, 825, 964, 976, 1046, 1241
MspR9I CCNGG 2 cut(s) 826, 964
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 1029
NciI CCSGG 2 cut(s) 826, 964
NdeII GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
NlaIII CATG 6 cut(s) 406, 469, 652, 773, 1201, 1307
NlaIV GGNNCC 4 cut(s) 394, 807, 980, 1239
NmeAIII GCCGAG 1 cut(s) 1259
NmuCI GTSAC 3 cut(s) 490, 793, 950
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 246
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 2 cut(s) 648, 1303
PcsI WCGNNNNNNNCGW 4 cut(s) 289, 349, 918, 1286
PflFI GACNNNGTC 1 cut(s) 748
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 4 cut(s) 882, 1131, 1134, 1285
PleI GAGTC 6 cut(s) 89, 560, 611, 757, 994, 1237
PpsI GAGTC 6 cut(s) 89, 560, 611, 757, 994, 1237
PsiI TTATAA 2 cut(s) 348, 1413
Psp124BI GAGCTC 1 cut(s) 1094
PspEI GGTNACC 1 cut(s) 950
PspN4I GGNNCC 4 cut(s) 394, 807, 980, 1239
PsuI RGATCY 2 cut(s) 149, 805
PsyI GACNNNGTC 1 cut(s) 748
RsaI GTAC 3 cut(s) 376, 532, 1239
RsaNI GTAC 3 cut(s) 375, 531, 1238
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 1094
SaqAI TTAA 4 cut(s) 575, 633, 1041, 1265
SatI GCNGC 4 cut(s) 881, 1130, 1133, 1284
Sau3AI GATC 8 cut(s) 149, 451, 474, 549, 805, 835, 1056, 1107
SchI GAGTC 6 cut(s) 89, 560, 611, 758, 995, 1238
ScrFI CCNGG 2 cut(s) 826, 964
SduI GDGCHC 1 cut(s) 1094
SfaNI GCATC 3 cut(s) 207, 712, 1086
SfuI TTCGAA 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SphI GCATGC 1 cut(s) 406
Sse9I AATT 9 cut(s) 523, 598, 644, 684, 712, 901, 1207, 1394, 1414
SsiI CCGC 7 cut(s) 142, 267, 310, 321, 481, 956, 1283
SspMI CTAG 2 cut(s) 39, 884
SstI GAGCTC 1 cut(s) 1094
StyD4I CCNGG 2 cut(s) 824, 962
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 293, 1013, 1421
TaiI ACGT 6 cut(s) 510, 728, 795, 843, 915, 1381
TaqII GACCGA 1 cut(s) 761
TasI AATT 9 cut(s) 523, 598, 644, 684, 712, 901, 1207, 1394, 1414
TauI GCSGC 1 cut(s) 1286
Tru1I TTAA 4 cut(s) 575, 633, 1041, 1265
Tru9I TTAA 4 cut(s) 575, 633, 1041, 1265
TscAI CASTG 3 cut(s) 547, 1108, 1260
TseFI GTSAC 3 cut(s) 490, 793, 950
TseI GCWGC 3 cut(s) 880, 1129, 1132
Tsp45I GTSAC 3 cut(s) 490, 793, 950
TspDTI ATGAA 6 cut(s) 413, 454, 581, 637, 665, 1388
TspGWI ACGGA 4 cut(s) 446, 458, 610, 1172
TspRI CASTG 3 cut(s) 547, 1108, 1260
Tth111I GACNNNGTC 1 cut(s) 748
Van91I CCANNNNNTGG 1 cut(s) 370
XapI RAATTY 3 cut(s) 598, 644, 1207
XceI RCATGY 1 cut(s) 406
XspI CTAG 2 cut(s) 39, 884
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.