Rorug03G0197500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012276
Physical Location & Seq
Forward (+)
17329807 .. 17335467
5661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0197500.1

Sequence Viewer

Length: 1017 bp
ATGGCCAAAGCTCTGAACCTAATACCCACCTCAACTTTCCCGCCATTTTCATGCCCCAGAATACCCACAAGGAGATTACTCTCTGTTAGAGCCACAACAGAGTCCCCTGAGACCCCCACAAGTTCATCAGCTTCAGTTCAGACCAAACCAGAAGTAAAGCCTGAACCTTTAACATTTGCTCCTCCACCCAATTTCAAGGCTCCGGAGCCCAAGCGGTTCGGAGTCCGACCCGATAAGAGTTTGGACGTGTTGGGTGCTTCTCTTGCCTTGTTCTTCCGATTGGGCTGTGGCGTTTTCGTTTCTGGGTATTCGTTTTCGTTTGTTCCGAAGGATGAGATTCCTCCAGACCAGTATGCTCTCGATTATAATGATTCCAAGGTCAAGGAGACTTCAAAATTAGGACCCCGGCCAGAGAAGCCTGTTGAGATATATGAGTTTGAAGGCTGTCCATTCTGCCGAAAGGTTAGGGAAATTGTTGCAGTACTGGACCTTGATGTTATATTTTATCCGTGCCCAAGAAATGGTCCAAACTTCCGTCCAAAGGTTGGGGAGATGGGCGGCAAAAAGCAGTTTCCTTACATGGTGGATCCAAACACTGGAGTTTCAATGTACGAATCAGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAAATGTTCCTATTGCATTGTCACTTGGTTTGTTGACGACTTTGACCGCTGGCCTTGCTCTGATTGGTCGCTCGGGAAAGGGAAGTATCTATACTCCATCAAAACTACCGCCCAAACCACTAGAAATATGGGCATATGAGGGATCCCCTTTTTGCAAACTTGTACGTGAAGTACTCGTAGAGTTAGAACTGCCGCACTTATATCGCAGCTGTGCTCGTGGCAGCCCCAAACGACAGATACTATATCAGAAAGTCGGACGTTTTCAGGCACCATACCTGGAAGATCCCAATACTGGGGTGAACATGTTTGAAAGTGCAGAAATTATCGAATATCTAAAAGCAACTTATGCTCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.47

Weight (kDa)

8.79

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N_3 PF13417 144 - 218 1.6e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 149 - 213 1.4e-07 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 265 - 336 6.7e-12 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57400 AT5G52500
fragaria_vesca FvH4_6g23940
malus_domestica MD12G1074600.v1.1 MD14G1072700.v1.1
prunus_persica Prupe.7G058900_v2.0.a1
pyrus_communis pycom12g06420 pycom14g06260
rosa_chinensis RchiOBHm_Chr3g0482601
rosa_laevigata RLG00000023338
rosa_multiflora Rmu_sc0000224.1_g000003 Rmu_sc0004687.1_g000003
rosa_roxburghii Rroxscaffold_6G00399090
rosa_rugosa Rorug03G0197500
rosa_samantha Rh3AG248600 Rh3BG284100 Rh3CG281600 Rh3DG277800
rosa_wichuraiana Rw3G022450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 925
AccB7I CCANNNNNTGG 3 cut(s) 521, 545, 596
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 6 cut(s) 41, 214, 558, 705, 767, 851
AclWI GGATC 5 cut(s) 581, 594, 795, 808, 935
AcoI YGGCCR 2 cut(s) 3, 407
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 5 cut(s) 483, 611, 635, 822, 831
AfiI CCNNNNNNNGG 6 cut(s) 521, 541, 545, 596, 950, 951
AflIII ACRYGT 2 cut(s) 246, 960
AgsI TTSAA 6 cut(s) 196, 393, 440, 606, 968, 1013
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 933
AluBI AGCT 3 cut(s) 11, 131, 867
AluI AGCT 3 cut(s) 11, 131, 867
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 2 cut(s) 104, 380
AlwI GGATC 5 cut(s) 581, 594, 795, 808, 935
Ama87I CYCGRG 1 cut(s) 730
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 3 cut(s) 3, 407, 709
ApeKI GCWGC 2 cut(s) 864, 879
AspS9I GGNCC 3 cut(s) 401, 487, 524
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 665, 967
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 3 cut(s) 401, 487, 524
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 586, 800
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BauI CACGAG 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 2 cut(s) 876, 891
BccI CCATC 3 cut(s) 547, 650, 763
BcgI CGANNNNNNTGC 2 cut(s) 842, 876
BciT130I CCWGG 1 cut(s) 935
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 104, 380
BfaI CTAG 1 cut(s) 779
BisI GCNGC 4 cut(s) 559, 851, 865, 880
BlsI GCNGC 4 cut(s) 560, 852, 866, 881
BmcAI AGTACT 3 cut(s) 483, 635, 831
Bme1390I CCNGG 2 cut(s) 406, 935
Bme18I GGWCC 3 cut(s) 401, 487, 524
BmeT110I CYCGRG 1 cut(s) 730
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 401, 487, 524
BmiI GGNNCC 6 cut(s) 201, 207, 403, 588, 802, 927
BmrFI CCNGG 2 cut(s) 406, 935
BmrI ACTGGG 1 cut(s) 960
BmuI ACTGGG 1 cut(s) 960
BpmI CTGGAG 2 cut(s) 327, 618
BpuMI CCSGG 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 375, 404
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 6 cut(s) 521, 541, 545, 596, 950, 951
Bse1I ACTGG 4 cut(s) 349, 489, 601, 955
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 2 cut(s) 375, 404
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 6 cut(s) 521, 541, 545, 596, 950, 951
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 4 cut(s) 349, 489, 601, 955
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 2 cut(s) 876, 891
BsgI GTGCAG 1 cut(s) 993
BshFI GGCC 3 cut(s) 5, 409, 711
BshNI GGYRCC 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 874
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 2 cut(s) 203, 406
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 6 cut(s) 521, 541, 545, 596, 950, 951
BsmAI GTCTC 2 cut(s) 104, 380
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 3 cut(s) 5, 409, 711
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 730
Bsp1286I GDGCHC 3 cut(s) 210, 515, 874
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 586, 800, 940
BspACI CCGC 6 cut(s) 41, 214, 558, 705, 767, 851
BspANI GGCC 3 cut(s) 5, 409, 711
BspCNI CTCAG 1 cut(s) 100
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 6 cut(s) 201, 207, 403, 588, 802, 927
BspPI GGATC 5 cut(s) 581, 594, 795, 808, 935
BspQI GCTCTTC 1 cut(s) 1014
BspT107I GGYRCC 1 cut(s) 925
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 4 cut(s) 349, 489, 601, 955
BssECI CCNNGG 2 cut(s) 375, 404
BssMI GATC 3 cut(s) 586, 800, 940
BssSI CACGAG 1 cut(s) 873
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 935
Bst6I CTCTTC 1 cut(s) 1014
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 709
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 3 cut(s) 589, 803, 943
BstMAI GTCTC 2 cut(s) 104, 380
BstMBI GATC 3 cut(s) 586, 800, 940
BstMWI GCNNNNNNNGC 4 cut(s) 263, 415, 713, 1004
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 2 cut(s) 404, 933
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 2 cut(s) 876, 891
BstX2I RGATCY 3 cut(s) 586, 800, 940
BstYI RGATCY 3 cut(s) 586, 800, 940
BsuRI GGCC 3 cut(s) 5, 409, 711
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 709
Cfr13I GGNCC 3 cut(s) 401, 487, 524
Csp6I GTAC 5 cut(s) 482, 610, 634, 821, 830
CviAII CATG 3 cut(s) 51, 580, 961
CviQI GTAC 5 cut(s) 482, 610, 634, 821, 830
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 588, 802, 942
DpnII GATC 3 cut(s) 586, 800, 940
EaeI YGGCCR 2 cut(s) 3, 407
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 401, 487, 524
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 730
EcoO109I RGGNCCY 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 54, 583, 964
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 50, 579, 960
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 793
Fnu4HI GCNGC 4 cut(s) 559, 851, 865, 880
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 559, 851, 865, 880
FspBI CTAG 1 cut(s) 779
GluI GCNGC 4 cut(s) 559, 851, 865, 880
GsuI CTGGAG 2 cut(s) 327, 618
HaeIII GGCC 3 cut(s) 5, 409, 711
HapII CCGG 2 cut(s) 203, 406
Hin1II CATG 3 cut(s) 54, 583, 964
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 5 cut(s) 101, 222, 337, 371, 614
HpaII CCGG 2 cut(s) 203, 406
HphI GGTGA 2 cut(s) 665, 967
Hpy166II GTNNAC 2 cut(s) 693, 958
Hpy188III TCNNGA 4 cut(s) 203, 344, 359, 732
Hpy8I GTNNAC 2 cut(s) 693, 958
HpyAV CCTTC 2 cut(s) 322, 434
HpyCH4IV ACGT 3 cut(s) 246, 823, 916
HpyCH4V TGCA 4 cut(s) 479, 674, 813, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 415, 713, 1004
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 3 cut(s) 246, 823, 916
Hsp92II CATG 3 cut(s) 54, 583, 964
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 586, 800, 940
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 3 cut(s) 184, 205, 205
Lsp1109I GCAGC 2 cut(s) 876, 891
MaeI CTAG 1 cut(s) 779
MaeII ACGT 3 cut(s) 246, 823, 916
MaeIII GTNAC 1 cut(s) 678
MalI GATC 3 cut(s) 588, 802, 942
MboI GATC 3 cut(s) 586, 800, 940
MboII GAAGA 3 cut(s) 265, 950, 1001
MflI RGATCY 3 cut(s) 586, 800, 940
MhlI GDGCHC 3 cut(s) 210, 515, 874
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 190, 395, 471, 978
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 110, 231
MmeI TCCRAC 2 cut(s) 250, 892
MnlI CCTC 4 cut(s) 40, 192, 351, 790
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 202
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 49
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 707, 867
MspI CCGG 2 cut(s) 203, 406
MspR9I CCNGG 2 cut(s) 406, 935
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 4 cut(s) 263, 415, 713, 1004
NciI CCSGG 1 cut(s) 406
NdeI CATATG 1 cut(s) 793
NdeII GATC 3 cut(s) 586, 800, 940
NlaIII CATG 3 cut(s) 54, 583, 964
NlaIV GGNNCC 6 cut(s) 201, 207, 403, 588, 802, 927
NmuCI GTSAC 1 cut(s) 678
NspI RCATGY 1 cut(s) 964
PciI ACATGT 1 cut(s) 960
PciSI GCTCTTC 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PfeI GAWTC 3 cut(s) 337, 371, 614
PflMI CCANNNNNTGG 3 cut(s) 521, 545, 596
PkrI GCNGC 4 cut(s) 560, 852, 866, 881
PleI GAGTC 2 cut(s) 109, 230
PpsI GAGTC 2 cut(s) 109, 230
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 401
PscI ACATGT 1 cut(s) 960
PsiI TTATAA 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 933
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 6 cut(s) 201, 207, 403, 588, 802, 927
PspPI GGNCC 3 cut(s) 401, 487, 524
PspPPI RGGWCCY 1 cut(s) 401
PsuI RGATCY 3 cut(s) 586, 800, 940
PvuII CAGCTG 1 cut(s) 867
RsaI GTAC 5 cut(s) 483, 611, 635, 822, 831
RsaNI GTAC 5 cut(s) 482, 610, 634, 821, 830
RseI CAYNNNNRTG 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 1014
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 4 cut(s) 559, 851, 865, 880
Sau3AI GATC 3 cut(s) 586, 800, 940
Sau96I GGNCC 3 cut(s) 401, 487, 524
ScaI AGTACT 3 cut(s) 483, 635, 831
SchI GAGTC 2 cut(s) 110, 231
ScrFI CCNGG 2 cut(s) 406, 935
SduI GDGCHC 3 cut(s) 210, 515, 874
SinI GGWCC 3 cut(s) 401, 487, 524
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 4 cut(s) 190, 395, 471, 978
SsiI CCGC 6 cut(s) 41, 214, 558, 705, 767, 851
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 404, 933
StyI CCWWGG 1 cut(s) 375
TaiI ACGT 3 cut(s) 249, 826, 919
TaqI TCGA 2 cut(s) 360, 984
TasI AATT 4 cut(s) 190, 395, 471, 978
TatI WGTACW 3 cut(s) 481, 633, 829
TauI GCSGC 2 cut(s) 561, 853
TfiI GAWTC 3 cut(s) 337, 371, 614
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 678
TseI GCWGC 2 cut(s) 864, 879
Tsp45I GTSAC 1 cut(s) 678
TspDTI ATGAA 2 cut(s) 39, 114
TspGWI ACGGA 2 cut(s) 498, 524
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 3 cut(s) 521, 545, 596
VpaK11BI GGWCC 3 cut(s) 401, 487, 524
XceI RCATGY 1 cut(s) 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XspI CTAG 1 cut(s) 779
ZrmI AGTACT 3 cut(s) 483, 635, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.