AT3G57790

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013425
Physical Location & Seq
Reverse (-)
21405283 .. 21407624
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57790.1

Sequence Viewer

Length: 1473 bp
ATGATGGGAAGCATATTATTGTTACTATTATTCTTTTCTCTGGTCCAATCACGTTCAGACACGTCATATTCAAAAATTCAACTTCCCGGCGATTCTCTGACCCTCTCCGTTACCGATTTCGGTGCTACCGGCGATGGTATCAACTACGATACTTCTGCGATTCAGTCAACCATTGACGCCTGCAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCTTCCGGCAACTATTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACGGAGAACGCCGTGCTTCTCGGTGGACCGAGAATCGAGGATTATTATCCGGCGGAGACTTCGTCGGATTGGTACGTGGTGGTGGCGAATAACGCTACGGATGTTGGAATCACTGGCGGAGGAGCGATTGATGGCCAAGGATCGAAGTTCGTGGTCAGATTCGACGAGAAGAAGAACGTGATGGTGAGCTGGAACCAAACCGGAGCTTGCTTGGGTGATGAGTGTAGACCCAGGCTTGTTGGATTCGTTGATTCTATAAACGTTGAGATCTGGAACATCACACTACGAGAGCCTGCGTATTGGTGTTTGCACATTGTGAGATGTGAGAACACATCAGTCCATGATGTATCGATCCTTGGGGACTTCAATACTCCAAATAACGATGGAATCGACATTGAAGATTCCAACAACACTGTTATAACTCGGTGTCATATCGATACTGGAGATGATGCAATCTGTCCCAAGACTTACACTGGTCCACTTTACAACTTAACCGCTACAGACTGTTGGATCCGGACCAAATCCTCAGCCATTAAACTCGGTAGTGCGAGCTGGTTTGATTTCAAAGGTCTTGTCTTTGATAACATCACTATTTTTGAATCTCACAGAGGACTTGGCATGCAAATACGCGATGGAGGAAATGTGAGTGACGTTACATTTTCAAACATAAACATTAGTACAAGATACTACGATCCTTCTTGGTGGGGAAGAGCAGAACCAATCTATATAACAACTTGCCCTCGTGACTCATCTGCAAAGGAAGGCTCAATCTCGAATCTCCTATTCGTAAACATAACAATCGATTCCGAAAACGGAGTCTTTTTATCAGGTTCACCAAACGGACTACTCTCAGATATAAAGTTCAAGAACATGAACCTTACTTTCAGAAGATGGAGTAATTACAGTGCAGGGCTTGTGGACTATAGACCTGGATGTCAAGGTCTAGTGAACCATAGAGCCACGTCTGGAATCATTATGGAGCATGTGAACGGGTTTCGCGTTGAGAATGTTGACCTGAAATGGTCAGATGATGATGATGTGAATGCTGCTTGGAATGTTCCTCTCGAATTTAGACCTTCCACTGTGAATAATGTCTCGTTTGTTGGTTTCACTTCTGGTCTTTACACGAAATTGTTTGAGTCTGATTACGTTATGGTTGGTGAAAACAACATTGCTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

490

Amino Acids

54.1

Weight (kDa)

4.79

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 36 - 287 1e-10 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 120 - 390 9.7e-21 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013425)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57790 AT3G57790
fragaria_vesca FvH4_6g22970
malus_domestica MD03G1162500.v1.1 MD12G1064100.v1.1
prunus_persica Prupe.7G070000_v2.0.a1
pyrus_communis pycom12g05590
rosa_chinensis RchiOBHm_Chr3g0480761
rosa_laevigata RLG00000023454
rosa_multiflora Rmu_co8289587.1_g000001 Rmu_sc0003902.1_g000012
rosa_roxburghii Rroxscaffold_6G00401090
rosa_rugosa Rorug03G0185600
rosa_samantha Rh3AG237700 Rh3BG271100 Rh3CG267200 Rh3DG263200
rosa_wichuraiana Rw3G021290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AasI GACNNNNNNGTC 1 cut(s) 1221
AccI GTMKAC 1 cut(s) 514
AccII CGCG 3 cut(s) 219, 918, 1287
AccIII TCCGGA 1 cut(s) 801
AciI CCGC 5 cut(s) 217, 249, 341, 405, 783
AclI AACGTT 1 cut(s) 549
AclWI GGATC 5 cut(s) 436, 634, 793, 806, 974
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 2 cut(s) 75, 1355
AcyI GRCGYC 2 cut(s) 177, 273
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 2 cut(s) 362, 967
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 8 cut(s) 72, 80, 655, 686, 853, 887, 951, 1153
AjiI CACGTC 2 cut(s) 63, 1251
AjnI CCWGG 2 cut(s) 518, 1216
AluBI AGCT 4 cut(s) 256, 477, 494, 840
AluI AGCT 4 cut(s) 256, 477, 494, 840
Alw26I GTCTC 2 cut(s) 338, 1387
AlwI GGATC 5 cut(s) 436, 634, 793, 806, 974
Aor13HI TCCGGA 1 cut(s) 801
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 1334
ApoI RAATTY 2 cut(s) 75, 1355
ArsI GACNNNNNNTTYG 4 cut(s) 846, 878, 1089, 1121
AspS9I GGNCC 4 cut(s) 43, 314, 764, 804
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 484, 515, 1113, 1460
AvaII GGWCC 4 cut(s) 43, 314, 764, 804
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 798
BauI CACGAG 1 cut(s) 1029
BbvCI CCTCAGC 1 cut(s) 814
BbvI GCAGC 1 cut(s) 1321
BccI CCATC 8 cut(s) 128, 218, 267, 413, 463, 665, 914, 1173
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 4 cut(s) 104, 137, 138, 171
BciT130I CCWGG 2 cut(s) 520, 1218
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 338, 1387
BfaI CTAG 1 cut(s) 1232
BfmI CTRYAG 2 cut(s) 786, 1210
BglII AGATCT 1 cut(s) 555
BisI GCNGC 2 cut(s) 217, 1335
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 2 cut(s) 218, 1336
Bme1390I CCNGG 3 cut(s) 87, 520, 1218
Bme18I GGWCC 4 cut(s) 43, 314, 764, 804
BmgBI CACGTC 2 cut(s) 63, 1251
BmgT120I GGNCC 4 cut(s) 43, 314, 764, 804
BmiI GGNNCC 2 cut(s) 482, 800
BmrFI CCNGG 3 cut(s) 87, 520, 1218
BmsI GCATC 1 cut(s) 727
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 814
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 87
Bsa29I ATCGAT 3 cut(s) 638, 723, 1089
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 2 cut(s) 177, 273
BsaJI CCNNGG 3 cut(s) 424, 518, 643
BsaWI WCCGGW 2 cut(s) 488, 801
BsaXI ACNNNNNCTCC 4 cut(s) 335, 365, 915, 945
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 406, 733, 766
Bse3DI GCAATG 1 cut(s) 1458
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 801
BseBI CCWGG 2 cut(s) 520, 1218
BseCI ATCGAT 3 cut(s) 638, 723, 1089
BseDI CCNNGG 3 cut(s) 424, 518, 643
BseGI GGATG 2 cut(s) 394, 1226
BseJI GATNNNNATC 1 cut(s) 333
BseMI GCAATG 1 cut(s) 1458
BseMII CTCAG 2 cut(s) 828, 1152
BseNI ACTGG 3 cut(s) 406, 733, 766
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 1 cut(s) 1321
BsgI GTGCAG 1 cut(s) 1215
Bsh1236I CGCG 3 cut(s) 219, 918, 1287
BshFI GGCC 1 cut(s) 423
BshVI ATCGAT 3 cut(s) 638, 723, 1089
BsiSI CCGG 6 cut(s) 87, 129, 234, 338, 489, 802
BslFI GGGAC 2 cut(s) 662, 732
BsmAI GTCTC 2 cut(s) 338, 1387
BsmFI GGGAC 2 cut(s) 662, 732
BsmI GAATGC 1 cut(s) 1336
BsnI GGCC 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 801
Bsp143I GATC 6 cut(s) 266, 428, 555, 639, 798, 979
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 5 cut(s) 217, 249, 341, 405, 783
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 2 cut(s) 827, 1151
BspDI ATCGAT 3 cut(s) 638, 723, 1089
BspEI TCCGGA 1 cut(s) 801
BspFNI CGCG 3 cut(s) 219, 918, 1287
BspLI GGNNCC 2 cut(s) 482, 800
BspPI GGATC 5 cut(s) 436, 634, 793, 806, 974
BspQI GCTCTTC 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 1458
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 406, 733, 766
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 424, 518, 643
BssMI GATC 6 cut(s) 266, 428, 555, 639, 798, 979
BssNI GRCGYC 2 cut(s) 177, 273
BssSI CACGAG 1 cut(s) 1029
BssT1I CCWWGG 2 cut(s) 424, 643
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 2 cut(s) 520, 1218
Bst4CI ACNGT 4 cut(s) 703, 794, 1193, 1372
Bst6I CTCTTC 1 cut(s) 991
BstACI GRCGYC 2 cut(s) 177, 273
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 5 cut(s) 181, 496, 582, 838, 908
BstDEI CTNAG 4 cut(s) 252, 814, 1138, 1470
BstF5I GGATG 2 cut(s) 394, 1226
BstFNI CGCG 3 cut(s) 219, 918, 1287
BstKTI GATC 6 cut(s) 269, 431, 558, 642, 801, 982
BstMAI GTCTC 2 cut(s) 338, 1387
BstMBI GATC 6 cut(s) 266, 428, 555, 639, 798, 979
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 2 cut(s) 520, 1218
BstNSI RCATGY 2 cut(s) 910, 1274
BstSCI CCNGG 3 cut(s) 85, 518, 1216
BstSFI CTRYAG 2 cut(s) 786, 1210
BstUI CGCG 3 cut(s) 219, 918, 1287
BstV1I GCAGC 1 cut(s) 1321
BstX2I RGATCY 2 cut(s) 555, 798
BstYI RGATCY 2 cut(s) 555, 798
Bsu15I ATCGAT 3 cut(s) 638, 723, 1089
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 3 cut(s) 638, 723, 1089
BtgZI GCGATG 2 cut(s) 147, 933
BtrI CACGTC 2 cut(s) 63, 1251
BtsCI GGATG 2 cut(s) 394, 1226
BtsIMutI CAGTG 5 cut(s) 399, 699, 759, 1198, 1368
Cac8I GCNNGC 5 cut(s) 181, 496, 582, 838, 908
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 43, 314, 764, 804
ClaI ATCGAT 3 cut(s) 638, 723, 1089
CseI GACGC 3 cut(s) 185, 208, 262
Csp6I GTAC 2 cut(s) 361, 966
CviAII CATG 4 cut(s) 629, 907, 1159, 1271
CviQI GTAC 2 cut(s) 361, 966
DdeI CTNAG 4 cut(s) 252, 814, 1138, 1470
DpnI GATC 6 cut(s) 268, 430, 557, 641, 800, 981
DpnII GATC 6 cut(s) 266, 428, 555, 639, 798, 979
DraIII CACNNNGTG 1 cut(s) 604
DrdI GACNNNNNNGTC 1 cut(s) 1221
DseDI GACNNNNNNGTC 1 cut(s) 1221
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 991
EciI GGCGGA 2 cut(s) 356, 420
Eco130I CCWWGG 2 cut(s) 424, 643
Eco47I GGWCC 4 cut(s) 43, 314, 764, 804
EcoRII CCWGG 2 cut(s) 518, 1216
EcoT14I CCWWGG 2 cut(s) 424, 643
ErhI CCWWGG 2 cut(s) 424, 643
FaeI CATG 4 cut(s) 632, 910, 1162, 1274
FaqI GGGAC 2 cut(s) 662, 732
FatI CATG 4 cut(s) 628, 906, 1158, 1270
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 217, 1335
FokI GGATG 2 cut(s) 401, 1233
Fsp4HI GCNGC 2 cut(s) 217, 1335
FspBI CTAG 1 cut(s) 1232
GluI GCNGC 2 cut(s) 217, 1335
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 1 cut(s) 423
HapII CCGG 6 cut(s) 87, 129, 234, 338, 489, 802
HgaI GACGC 3 cut(s) 185, 208, 262
Hin1I GRCGYC 2 cut(s) 177, 273
Hin1II CATG 4 cut(s) 632, 910, 1162, 1274
HincII GTYRAC 2 cut(s) 168, 1300
HindII GTYRAC 2 cut(s) 168, 1300
HpaII CCGG 6 cut(s) 87, 129, 234, 338, 489, 802
HphI GGTGA 4 cut(s) 484, 515, 1113, 1460
Hpy188III TCNNGA 8 cut(s) 281, 559, 802, 1031, 1060, 1153, 1254, 1352
Hpy99I CGWCG 3 cut(s) 224, 355, 455
HpyAV CCTTC 4 cut(s) 240, 993, 1043, 1374
HpyCH4III ACNGT 4 cut(s) 703, 794, 1193, 1372
HpyCH4IV ACGT 8 cut(s) 52, 62, 363, 465, 549, 939, 1250, 1437
HpyCH4V TGCA 6 cut(s) 183, 598, 740, 910, 1043, 1196
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 4 cut(s) 252, 814, 1138, 1470
HpySE526I ACGT 8 cut(s) 52, 62, 363, 465, 549, 939, 1250, 1437
Hsp92I GRCGYC 2 cut(s) 177, 273
Hsp92II CATG 4 cut(s) 632, 910, 1162, 1274
Kpn2I TCCGGA 1 cut(s) 801
Kzo9I GATC 6 cut(s) 266, 428, 555, 639, 798, 979
LguI GCTCTTC 1 cut(s) 991
LmnI GCTCC 4 cut(s) 261, 410, 491, 1267
Lsp1109I GCAGC 1 cut(s) 1321
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 1232
MaeII ACGT 8 cut(s) 52, 62, 363, 465, 549, 939, 1250, 1437
MaeIII GTNAC 7 cut(s) 21, 109, 188, 286, 935, 940, 1031
MalI GATC 6 cut(s) 268, 430, 557, 641, 800, 981
MboI GATC 6 cut(s) 266, 428, 555, 639, 798, 979
MboII GAAGA 6 cut(s) 198, 469, 472, 698, 1008, 1188
MflI RGATCY 2 cut(s) 555, 798
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 4 cut(s) 75, 1186, 1355, 1418
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 3 cut(s) 1028, 1113, 1436
MmeI TCCRAC 5 cut(s) 333, 373, 508, 717, 776
MnlI CCTC 8 cut(s) 113, 319, 401, 823, 890, 917, 1038, 1359
Mox20I TGGCCA 1 cut(s) 423
MroI TCCGGA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 423
MseI TTAA 2 cut(s) 779, 822
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 6 cut(s) 87, 129, 234, 338, 489, 802
MspR9I CCNGG 3 cut(s) 87, 520, 1218
Mva1269I GAATGC 1 cut(s) 1336
MvaI CCWGG 2 cut(s) 520, 1218
MvnI CGCG 3 cut(s) 219, 918, 1287
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 87
NdeII GATC 6 cut(s) 266, 428, 555, 639, 798, 979
NlaIII CATG 4 cut(s) 632, 910, 1162, 1274
NlaIV GGNNCC 2 cut(s) 482, 800
NmuCI GTSAC 4 cut(s) 188, 286, 935, 1031
NspI RCATGY 2 cut(s) 910, 1274
PaeI GCATGC 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 991
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 1284
PctI GAATGC 1 cut(s) 1336
PflFI GACNNNGTC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 218, 1336
PleI GAGTC 3 cut(s) 1028, 1112, 1435
PpsI GAGTC 3 cut(s) 1028, 1112, 1435
Ppu21I YACGTR 1 cut(s) 364
PsiI TTATAA 1 cut(s) 707
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 518, 1216
PspGI CCWGG 2 cut(s) 518, 1216
PspN4I GGNNCC 2 cut(s) 482, 800
PspPI GGNCC 4 cut(s) 43, 314, 764, 804
PsuI RGATCY 2 cut(s) 555, 798
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 2 cut(s) 362, 967
RsaNI GTAC 2 cut(s) 361, 966
SapI GCTCTTC 1 cut(s) 991
SaqAI TTAA 2 cut(s) 779, 822
SatI GCNGC 2 cut(s) 217, 1335
Sau3AI GATC 6 cut(s) 266, 428, 555, 639, 798, 979
Sau96I GGNCC 4 cut(s) 43, 314, 764, 804
SchI GAGTC 3 cut(s) 1028, 1113, 1436
ScrFI CCNGG 3 cut(s) 87, 520, 1218
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 2 cut(s) 786, 1210
SinI GGWCC 4 cut(s) 43, 314, 764, 804
SphI GCATGC 1 cut(s) 910
Sse9I AATT 4 cut(s) 75, 1186, 1355, 1418
SsiI CCGC 5 cut(s) 217, 249, 341, 405, 783
SspMI CTAG 1 cut(s) 1232
StyD4I CCNGG 3 cut(s) 85, 518, 1216
StyI CCWWGG 2 cut(s) 424, 643
TaaI ACNGT 4 cut(s) 703, 794, 1193, 1372
TaiI ACGT 8 cut(s) 55, 65, 366, 468, 552, 942, 1253, 1440
TaqII GACCGA 1 cut(s) 331
TasI AATT 4 cut(s) 75, 1186, 1355, 1418
TatI WGTACW 1 cut(s) 965
TauI GCSGC 1 cut(s) 219
Tru1I TTAA 2 cut(s) 779, 822
Tru9I TTAA 2 cut(s) 779, 822
TscAI CASTG 5 cut(s) 406, 706, 766, 1198, 1375
TseFI GTSAC 4 cut(s) 188, 286, 935, 1031
TseI GCWGC 1 cut(s) 1334
Tsp45I GTSAC 4 cut(s) 188, 286, 935, 1031
TspDTI ATGAA 1 cut(s) 1175
TspGWI ACGGA 5 cut(s) 97, 305, 401, 1116, 1143
TspRI CASTG 5 cut(s) 406, 706, 766, 1198, 1375
Tth111I GACNNNGTC 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 43, 314, 764, 804
XapI RAATTY 2 cut(s) 75, 1355
XceI RCATGY 2 cut(s) 910, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 514
XspI CTAG 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.