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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58770 |
| fragaria_vesca | FvH4_6g37820 FvH4_6g37820 |
| malus_domestica | MD09G1155600.v1.1 MD17G1141700.v1.1 |
| prunus_persica | Prupe.3G170300_v2.0.a1 |
| pyrus_communis | pycom17g13500 |
| rosa_chinensis | RchiOBHm_Chr2g0150941 |
| rosa_laevigata | RLG00000020518 |
| rosa_multiflora | Rmu_sc0000185.1_g000030 |
| rosa_roxburghii | Rroxscaffold_2G00096830 |
| rosa_rugosa | Rorug02G0423400 Rorug02G0423400 Rorug02G0423400 |
| rosa_samantha | Rh2AG484000 Rh2BG496200 Rh2CG470100 Rh2DG507100 |
| rosa_wichuraiana | Rw2G039660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1983 |
| AccB1I | GGYRCC | 1 cut(s) | 277 |
| AccI | GTMKAC | 1 cut(s) | 740 |
| AccII | CGCG | 2 cut(s) | 996, 1877 |
| AciI | CCGC | 8 cut(s) | 803, 994, 996, 1292, 1392, 1479, 1537, 2203 |
| AclI | AACGTT | 1 cut(s) | 2184 |
| AclWI | GGATC | 5 cut(s) | 194, 280, 1019, 1610, 1757 |
| AcoI | YGGCCR | 1 cut(s) | 77 |
| AcsI | RAATTY | 7 cut(s) | 264, 362, 1225, 1235, 1838, 2053, 2291 |
| AcuI | CTGAAG | 2 cut(s) | 749, 1431 |
| AcyI | GRCGYC | 1 cut(s) | 278 |
| AfaI | GTAC | 8 cut(s) | 38, 628, 757, 947, 1010, 1177, 1316, 2050 |
| AfeI | AGCGCT | 1 cut(s) | 251 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 86, 135, 213, 357, 1641, 2157, 2267 |
| AgeI | ACCGGT | 1 cut(s) | 1402 |
| AgsI | TTSAA | 6 cut(s) | 526, 810, 914, 1688, 1707, 1758 |
| AhlI | ACTAGT | 2 cut(s) | 752, 1178 |
| AluBI | AGCT | 9 cut(s) | 154, 441, 616, 908, 953, 983, 1662, 1739, 1797 |
| AluI | AGCT | 9 cut(s) | 154, 441, 616, 908, 953, 983, 1662, 1739, 1797 |
| Alw21I | GWGCWC | 1 cut(s) | 315 |
| Alw26I | GTCTC | 9 cut(s) | 130, 187, 459, 637, 677, 932, 1136, 1337, 2006 |
| Alw44I | GTGCAC | 1 cut(s) | 311 |
| AlwI | GGATC | 5 cut(s) | 194, 280, 1019, 1610, 1757 |
| Aor51HI | AGCGCT | 1 cut(s) | 251 |
| AoxI | GGCC | 5 cut(s) | 77, 219, 1333, 1928, 2303 |
| ApaLI | GTGCAC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 2 cut(s) | 1268, 2257 |
| ApoI | RAATTY | 7 cut(s) | 264, 362, 1225, 1235, 1838, 2053, 2291 |
| AsiGI | ACCGGT | 1 cut(s) | 1402 |
| AspLEI | GCGC | 2 cut(s) | 252, 280 |
| AspS9I | GGNCC | 4 cut(s) | 836, 1610, 1644, 1928 |
| AsuHPI | GGTGA | 5 cut(s) | 365, 1008, 1130, 1498, 1607 |
| AvaII | GGWCC | 3 cut(s) | 836, 1610, 1644 |
| BaeGI | GKGCMC | 1 cut(s) | 315 |
| BanI | GGYRCC | 1 cut(s) | 277 |
| BanII | GRGCYC | 1 cut(s) | 2086 |
| Bbv12I | GWGCWC | 1 cut(s) | 315 |
| BbvI | GCAGC | 2 cut(s) | 1280, 2244 |
| BccI | CCATC | 3 cut(s) | 263, 1376, 1537 |
| BceAI | ACGGC | 2 cut(s) | 64, 291 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 251, 285 |
| BciVI | GTATCC | 1 cut(s) | 2235 |
| BclI | TGATCA | 2 cut(s) | 592, 745 |
| BcoDI | GTCTC | 9 cut(s) | 130, 187, 459, 637, 677, 932, 1136, 1337, 2006 |
| BcuI | ACTAGT | 2 cut(s) | 752, 1178 |
| BfaI | CTAG | 8 cut(s) | 234, 753, 1106, 1124, 1179, 1326, 2016, 2061 |
| BfmI | CTRYAG | 3 cut(s) | 1112, 1200, 1623 |
| BfoI | RGCGCY | 2 cut(s) | 253, 281 |
| BfuI | GTATCC | 1 cut(s) | 2235 |
| BglII | AGATCT | 2 cut(s) | 91, 1108 |
| BisI | GCNGC | 4 cut(s) | 1269, 1393, 1538, 2258 |
| BlsI | GCNGC | 4 cut(s) | 1270, 1394, 1539, 2259 |
| BmcAI | AGTACT | 1 cut(s) | 1316 |
| Bme18I | GGWCC | 3 cut(s) | 836, 1610, 1644 |
| BmgT120I | GGNCC | 4 cut(s) | 836, 1610, 1644, 1928 |
| BmiI | GGNNCC | 4 cut(s) | 279, 1100, 1427, 1645 |
| BmsI | GCATC | 6 cut(s) | 859, 1035, 1120, 1205, 1606, 2002 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 925, 957 |
| BpmI | CTGGAG | 1 cut(s) | 638 |
| BpuEI | CTTGAG | 2 cut(s) | 888, 1509 |
| BsaAI | YACGTR | 1 cut(s) | 1748 |
| BsaBI | GATNNNNATC | 1 cut(s) | 198 |
| BsaHI | GRCGYC | 1 cut(s) | 278 |
| BsaI | GGTCTC | 3 cut(s) | 187, 1337, 2006 |
| BsaJI | CCNNGG | 5 cut(s) | 832, 994, 1421, 1912, 2078 |
| BsaWI | WCCGGW | 5 cut(s) | 135, 178, 350, 1402, 1612 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 160, 190 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 86, 135, 213, 357, 1641, 2157, 2267 |
| Bse118I | RCCGGY | 1 cut(s) | 1402 |
| Bse1I | ACTGG | 2 cut(s) | 289, 1242 |
| Bse3DI | GCAATG | 1 cut(s) | 1001 |
| Bse8I | GATNNNNATC | 1 cut(s) | 198 |
| BseDI | CCNNGG | 5 cut(s) | 832, 994, 1421, 1912, 2078 |
| BseGI | GGATG | 5 cut(s) | 409, 874, 1050, 1558, 1621 |
| BseJI | GATNNNNATC | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 86, 135, 213, 357, 1641, 2157, 2267 |
| BseMI | GCAATG | 1 cut(s) | 1001 |
| BseMII | CTCAG | 7 cut(s) | 492, 626, 704, 1590, 1884, 1963, 2088 |
| BseNI | ACTGG | 2 cut(s) | 289, 1242 |
| BseRI | GAGGAG | 3 cut(s) | 568, 1438, 2234 |
| BseSI | GKGCMC | 1 cut(s) | 315 |
| BseXI | GCAGC | 2 cut(s) | 1280, 2244 |
| BseYI | CCCAGC | 2 cut(s) | 1662, 2132 |
| Bsh1236I | CGCG | 2 cut(s) | 996, 1877 |
| BshFI | GGCC | 5 cut(s) | 79, 221, 1335, 1930, 2305 |
| BshNI | GGYRCC | 1 cut(s) | 277 |
| BshTI | ACCGGT | 1 cut(s) | 1402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 315 |
| BsiSI | CCGG | 6 cut(s) | 87, 136, 179, 351, 1403, 1613 |
| BslFI | GGGAC | 3 cut(s) | 1012, 1657, 2231 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 86, 135, 213, 357, 1641, 2157, 2267 |
| BsmAI | GTCTC | 9 cut(s) | 130, 187, 459, 637, 677, 932, 1136, 1337, 2006 |
| BsmBI | CGTCTC | 1 cut(s) | 637 |
| BsmFI | GGGAC | 3 cut(s) | 1012, 1657, 2231 |
| BsnI | GGCC | 5 cut(s) | 79, 221, 1335, 1930, 2305 |
| Bso31I | GGTCTC | 3 cut(s) | 187, 1337, 2006 |
| Bsp1286I | GDGCHC | 2 cut(s) | 315, 2086 |
| Bsp19I | CCATGG | 1 cut(s) | 1912 |
| BspACI | CCGC | 8 cut(s) | 803, 994, 996, 1292, 1392, 1479, 1537, 2203 |
| BspANI | GGCC | 5 cut(s) | 79, 221, 1335, 1930, 2305 |
| BspCNI | CTCAG | 7 cut(s) | 493, 625, 703, 1589, 1885, 1962, 2089 |
| BspFNI | CGCG | 2 cut(s) | 996, 1877 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspLI | GGNNCC | 4 cut(s) | 279, 1100, 1427, 1645 |
| BspPI | GGATC | 5 cut(s) | 194, 280, 1019, 1610, 1757 |
| BspT107I | GGYRCC | 1 cut(s) | 277 |
| BspTNI | GGTCTC | 3 cut(s) | 187, 1337, 2006 |
| BsrDI | GCAATG | 1 cut(s) | 1001 |
| BsrFI | RCCGGY | 1 cut(s) | 1402 |
| BsrI | ACTGG | 2 cut(s) | 289, 1242 |
| BssAI | RCCGGY | 1 cut(s) | 1402 |
| BssECI | CCNNGG | 5 cut(s) | 832, 994, 1421, 1912, 2078 |
| BssNI | GRCGYC | 1 cut(s) | 278 |
| BssT1I | CCWWGG | 3 cut(s) | 832, 1912, 2078 |
| Bst4CI | ACNGT | 7 cut(s) | 17, 124, 240, 631, 760, 1940, 2067 |
| BstACI | GRCGYC | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1274 |
| BstBAI | YACGTR | 1 cut(s) | 1748 |
| BstC8I | GCNNGC | 9 cut(s) | 77, 156, 801, 1871, 1875, 1955, 2138, 2303, 2307 |
| BstDSI | CCRYGG | 2 cut(s) | 994, 1912 |
| BstEII | GGTNACC | 1 cut(s) | 1118 |
| BstF5I | GGATG | 5 cut(s) | 409, 874, 1050, 1558, 1621 |
| BstFNI | CGCG | 2 cut(s) | 996, 1877 |
| BstH2I | RGCGCY | 2 cut(s) | 253, 281 |
| BstHHI | GCGC | 2 cut(s) | 252, 280 |
| BstMAI | GTCTC | 9 cut(s) | 130, 187, 459, 637, 677, 932, 1136, 1337, 2006 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1274, 2263 |
| BstNSI | RCATGY | 1 cut(s) | 1079 |
| BstPI | GGTNACC | 1 cut(s) | 1118 |
| BstSFI | CTRYAG | 3 cut(s) | 1112, 1200, 1623 |
| BstSLI | GKGCMC | 1 cut(s) | 315 |
| BstUI | CGCG | 2 cut(s) | 996, 1877 |
| BstV1I | GCAGC | 2 cut(s) | 1280, 2244 |
| BstX2I | RGATCY | 4 cut(s) | 91, 285, 1108, 1762 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1717, 1919 |
| BstYI | RGATCY | 4 cut(s) | 91, 285, 1108, 1762 |
| BsuI | GTATCC | 1 cut(s) | 2235 |
| BsuRI | GGCC | 5 cut(s) | 79, 221, 1335, 1930, 2305 |
| BtgI | CCRYGG | 2 cut(s) | 994, 1912 |
| BtsCI | GGATG | 5 cut(s) | 409, 874, 1050, 1558, 1621 |
| BtsIMutI | CAGTG | 2 cut(s) | 245, 1249 |
| Cac8I | GCNNGC | 9 cut(s) | 77, 156, 801, 1871, 1875, 1955, 2138, 2303, 2307 |
| CciI | TCATGA | 1 cut(s) | 493 |
| CfoI | GCGC | 2 cut(s) | 252, 280 |
| Cfr10I | RCCGGY | 1 cut(s) | 1402 |
| Cfr13I | GGNCC | 4 cut(s) | 836, 1610, 1644, 1928 |
| Cfr42I | CCGCGG | 1 cut(s) | 997 |
| CseI | GACGC | 1 cut(s) | 1866 |
| Csp6I | GTAC | 8 cut(s) | 37, 627, 756, 946, 1009, 1176, 1315, 2049 |
| CspAI | ACCGGT | 1 cut(s) | 1402 |
| CviAII | CATG | 6 cut(s) | 149, 494, 578, 1076, 1863, 1913 |
| CviQI | GTAC | 8 cut(s) | 37, 627, 756, 946, 1009, 1176, 1315, 2049 |
| DinI | GGCGCC | 1 cut(s) | 279 |
| DraI | TTTAAA | 2 cut(s) | 1062, 1494 |
| EaeI | YGGCCR | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 3 cut(s) | 832, 1912, 2078 |
| Eco147I | AGGCCT | 1 cut(s) | 1335 |
| Eco24I | GRGCYC | 1 cut(s) | 2086 |
| Eco31I | GGTCTC | 3 cut(s) | 187, 1337, 2006 |
| Eco47I | GGWCC | 3 cut(s) | 836, 1610, 1644 |
| Eco47III | AGCGCT | 1 cut(s) | 251 |
| Eco57I | CTGAAG | 2 cut(s) | 749, 1431 |
| Eco91I | GGTNACC | 1 cut(s) | 1118 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1644 |
| EcoO65I | GGTNACC | 1 cut(s) | 1118 |
| EcoRI | GAATTC | 1 cut(s) | 362 |
| EcoT14I | CCWWGG | 3 cut(s) | 832, 1912, 2078 |
| EcoT22I | ATGCAT | 2 cut(s) | 768, 874 |
| EcoT38I | GRGCYC | 1 cut(s) | 2086 |
| EgeI | GGCGCC | 1 cut(s) | 279 |
| EheI | GGCGCC | 1 cut(s) | 279 |
| ErhI | CCWWGG | 3 cut(s) | 832, 1912, 2078 |
| Esp3I | CGTCTC | 1 cut(s) | 637 |
| FaeI | CATG | 6 cut(s) | 152, 497, 581, 1079, 1866, 1916 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2155, 2187, 2280, 2312 |
| FaqI | GGGAC | 3 cut(s) | 1012, 1657, 2231 |
| FatI | CATG | 6 cut(s) | 148, 493, 577, 1075, 1862, 1912 |
| FauI | CCCGC | 2 cut(s) | 989, 2196 |
| FauNDI | CATATG | 2 cut(s) | 1819, 1975 |
| FbaI | TGATCA | 2 cut(s) | 592, 745 |
| FblI | GTMKAC | 1 cut(s) | 740 |
| Fnu4HI | GCNGC | 4 cut(s) | 1269, 1393, 1538, 2258 |
| FokI | GGATG | 5 cut(s) | 416, 881, 1057, 1565, 1628 |
| FriOI | GRGCYC | 1 cut(s) | 2086 |
| Fsp4HI | GCNGC | 4 cut(s) | 1269, 1393, 1538, 2258 |
| FspBI | CTAG | 8 cut(s) | 234, 753, 1106, 1124, 1179, 1326, 2016, 2061 |
| GlaI | GCGC | 2 cut(s) | 251, 279 |
| GluI | GCNGC | 4 cut(s) | 1269, 1393, 1538, 2258 |
| GsaI | CCCAGC | 2 cut(s) | 1666, 2136 |
| GsuI | CTGGAG | 1 cut(s) | 638 |
| HaeII | RGCGCY | 2 cut(s) | 253, 281 |
| HaeIII | GGCC | 5 cut(s) | 79, 221, 1335, 1930, 2305 |
| HapII | CCGG | 6 cut(s) | 87, 136, 179, 351, 1403, 1613 |
| HgaI | GACGC | 1 cut(s) | 1866 |
| HhaI | GCGC | 2 cut(s) | 252, 280 |
| Hin1I | GRCGYC | 1 cut(s) | 278 |
| Hin1II | CATG | 6 cut(s) | 152, 497, 581, 1079, 1866, 1916 |
| Hin6I | GCGC | 2 cut(s) | 250, 278 |
| HinP1I | GCGC | 2 cut(s) | 250, 278 |
| HincII | GTYRAC | 3 cut(s) | 379, 741, 2128 |
| HindII | GTYRAC | 3 cut(s) | 379, 741, 2128 |
| HpaI | GTTAAC | 1 cut(s) | 379 |
| HpaII | CCGG | 6 cut(s) | 87, 136, 179, 351, 1403, 1613 |
| HphI | GGTGA | 5 cut(s) | 365, 1008, 1130, 1498, 1607 |
| Hpy166II | GTNNAC | 8 cut(s) | 39, 313, 379, 741, 851, 1514, 1784, 2128 |
| Hpy188III | TCNNGA | 8 cut(s) | 359, 494, 560, 1106, 1685, 1812, 1829, 1855 |
| Hpy8I | GTNNAC | 8 cut(s) | 39, 313, 379, 741, 851, 1514, 1784, 2128 |
| Hpy99I | CGWCG | 3 cut(s) | 216, 263, 277 |
| HpyAV | CCTTC | 8 cut(s) | 40, 211, 463, 724, 969, 1357, 1854, 2161 |
| HpyCH4III | ACNGT | 7 cut(s) | 17, 124, 240, 631, 760, 1940, 2067 |
| HpyCH4IV | ACGT | 3 cut(s) | 1747, 2147, 2184 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1274, 2263 |
| HpySE526I | ACGT | 3 cut(s) | 1747, 2147, 2184 |
| Hsp92I | GRCGYC | 1 cut(s) | 278 |
| Hsp92II | CATG | 6 cut(s) | 152, 497, 581, 1079, 1866, 1916 |
| HspAI | GCGC | 2 cut(s) | 250, 278 |
| KasI | GGCGCC | 1 cut(s) | 277 |
| Ksp22I | TGATCA | 2 cut(s) | 592, 745 |
| KspAI | GTTAAC | 1 cut(s) | 379 |
| KspI | CCGCGG | 1 cut(s) | 997 |
| LmnI | GCTCC | 2 cut(s) | 257, 1425 |
| Lsp1109I | GCAGC | 2 cut(s) | 1280, 2244 |
| LweI | GCATC | 6 cut(s) | 859, 1035, 1120, 1205, 1606, 2002 |
| MaeI | CTAG | 8 cut(s) | 234, 753, 1106, 1124, 1179, 1326, 2016, 2061 |
| MaeII | ACGT | 3 cut(s) | 1747, 2147, 2184 |
| MaeIII | GTNAC | 4 cut(s) | 862, 1118, 1571, 2067 |
| MboII | GAAGA | 9 cut(s) | 101, 295, 311, 331, 334, 709, 1909, 2163, 2245 |
| MflI | RGATCY | 4 cut(s) | 91, 285, 1108, 1762 |
| MhlI | GDGCHC | 2 cut(s) | 315, 2086 |
| Mly113I | GGCGCC | 1 cut(s) | 278 |
| MlyI | GAGTC | 4 cut(s) | 565, 679, 934, 2068 |
| MmeI | TCCRAC | 2 cut(s) | 194, 2167 |
| Mph1103I | ATGCAT | 2 cut(s) | 768, 874 |
| MseI | TTAA | 9 cut(s) | 378, 432, 1061, 1259, 1296, 1367, 1493, 2276, 2286 |
| MspA1I | CMGCKG | 3 cut(s) | 616, 983, 996 |
| MspI | CCGG | 6 cut(s) | 87, 136, 179, 351, 1403, 1613 |
| MvnI | CGCG | 2 cut(s) | 996, 1877 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1274, 2263 |
| NarI | GGCGCC | 1 cut(s) | 278 |
| NcoI | CCATGG | 1 cut(s) | 1912 |
| NdeI | CATATG | 2 cut(s) | 1819, 1975 |
| NlaIII | CATG | 6 cut(s) | 152, 497, 581, 1079, 1866, 1916 |
| NlaIV | GGNNCC | 4 cut(s) | 279, 1100, 1427, 1645 |
| NmuCI | GTSAC | 2 cut(s) | 1118, 2067 |
| NsiI | ATGCAT | 2 cut(s) | 768, 874 |
| NspI | RCATGY | 1 cut(s) | 1079 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PceI | AGGCCT | 1 cut(s) | 1335 |
| PinAI | ACCGGT | 1 cut(s) | 1402 |
| PkrI | GCNGC | 4 cut(s) | 1270, 1394, 1539, 2259 |
| PleI | GAGTC | 4 cut(s) | 564, 678, 934, 2068 |
| PluTI | GGCGCC | 1 cut(s) | 281 |
| PpsI | GAGTC | 4 cut(s) | 564, 678, 934, 2068 |
| Ppu21I | YACGTR | 1 cut(s) | 1748 |
| PpuMI | RGGWCCY | 1 cut(s) | 1644 |
| PsiI | TTATAA | 1 cut(s) | 1983 |
| Psp1406I | AACGTT | 1 cut(s) | 2184 |
| Psp5II | RGGWCCY | 1 cut(s) | 1644 |
| PspEI | GGTNACC | 1 cut(s) | 1118 |
| PspFI | CCCAGC | 2 cut(s) | 1662, 2132 |
| PspN4I | GGNNCC | 4 cut(s) | 279, 1100, 1427, 1645 |
| PspPI | GGNCC | 4 cut(s) | 836, 1610, 1644, 1928 |
| PspPPI | RGGWCCY | 1 cut(s) | 1644 |
| PsuI | RGATCY | 4 cut(s) | 91, 285, 1108, 1762 |
| PvuII | CAGCTG | 2 cut(s) | 616, 983 |
| RsaI | GTAC | 8 cut(s) | 38, 628, 757, 947, 1010, 1177, 1316, 2050 |
| RsaNI | GTAC | 8 cut(s) | 37, 627, 756, 946, 1009, 1176, 1315, 2049 |
| SacII | CCGCGG | 1 cut(s) | 997 |
| SalI | GTCGAC | 1 cut(s) | 739 |
| SaqAI | TTAA | 9 cut(s) | 378, 432, 1061, 1259, 1296, 1367, 1493, 2276, 2286 |
| SatI | GCNGC | 4 cut(s) | 1269, 1393, 1538, 2258 |
| Sau96I | GGNCC | 4 cut(s) | 836, 1610, 1644, 1928 |
| ScaI | AGTACT | 1 cut(s) | 1316 |
| SchI | GAGTC | 4 cut(s) | 565, 679, 934, 2068 |
| SduI | GDGCHC | 2 cut(s) | 315, 2086 |
| SfaNI | GCATC | 6 cut(s) | 859, 1035, 1120, 1205, 1606, 2002 |
| SfcI | CTRYAG | 3 cut(s) | 1112, 1200, 1623 |
| SfoI | GGCGCC | 1 cut(s) | 279 |
| Sfr303I | CCGCGG | 1 cut(s) | 997 |
| SgrBI | CCGCGG | 1 cut(s) | 997 |
| SinI | GGWCC | 3 cut(s) | 836, 1610, 1644 |
| SmlI | CTYRAG | 2 cut(s) | 903, 1524 |
| SmoI | CTYRAG | 2 cut(s) | 903, 1524 |
| SpeI | ACTAGT | 2 cut(s) | 752, 1178 |
| SseBI | AGGCCT | 1 cut(s) | 1335 |
| SsiI | CCGC | 8 cut(s) | 803, 994, 996, 1292, 1392, 1479, 1537, 2203 |
| SspDI | GGCGCC | 1 cut(s) | 277 |
| SspI | AATATT | 1 cut(s) | 1716 |
| SspMI | CTAG | 8 cut(s) | 234, 753, 1106, 1124, 1179, 1326, 2016, 2061 |
| StuI | AGGCCT | 1 cut(s) | 1335 |
| StyI | CCWWGG | 3 cut(s) | 832, 1912, 2078 |
| TaaI | ACNGT | 7 cut(s) | 17, 124, 240, 631, 760, 1940, 2067 |
| TaiI | ACGT | 3 cut(s) | 1750, 2150, 2187 |
| TaqI | TCGA | 4 cut(s) | 261, 740, 932, 2045 |
| TaqII | GACCGA | 1 cut(s) | 1152 |
| TatI | WGTACW | 5 cut(s) | 36, 755, 1175, 1314, 2048 |
| TauI | GCSGC | 2 cut(s) | 1395, 1540 |
| Tru1I | TTAA | 9 cut(s) | 378, 432, 1061, 1259, 1296, 1367, 1493, 2276, 2286 |
| Tru9I | TTAA | 9 cut(s) | 378, 432, 1061, 1259, 1296, 1367, 1493, 2276, 2286 |
| TscAI | CASTG | 2 cut(s) | 245, 1249 |
| TseFI | GTSAC | 2 cut(s) | 1118, 2067 |
| TseI | GCWGC | 2 cut(s) | 1268, 2257 |
| Tsp45I | GTSAC | 2 cut(s) | 1118, 2067 |
| TspDTI | ATGAA | 4 cut(s) | 78, 674, 2082, 2246 |
| TspGWI | ACGGA | 5 cut(s) | 56, 192, 550, 881, 933 |
| TspRI | CASTG | 2 cut(s) | 245, 1249 |
| VneI | GTGCAC | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 3 cut(s) | 836, 1610, 1644 |
| XapI | RAATTY | 7 cut(s) | 264, 362, 1225, 1235, 1838, 2053, 2291 |
| XbaI | TCTAGA | 1 cut(s) | 1105 |
| XceI | RCATGY | 1 cut(s) | 1079 |
| XmiI | GTMKAC | 1 cut(s) | 740 |
| XspI | CTAG | 8 cut(s) | 234, 753, 1106, 1124, 1179, 1326, 2016, 2061 |
| ZrmI | AGTACT | 1 cut(s) | 1316 |
| Zsp2I | ATGCAT | 2 cut(s) | 768, 874 |