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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58770 |
| fragaria_vesca | FvH4_6g37820 FvH4_6g37820 |
| malus_domestica | MD09G1155600.v1.1 MD17G1141700.v1.1 |
| prunus_persica | Prupe.3G170300_v2.0.a1 |
| pyrus_communis | pycom17g13500 |
| rosa_chinensis | RchiOBHm_Chr2g0150941 |
| rosa_laevigata | RLG00000020518 |
| rosa_multiflora | Rmu_sc0000185.1_g000030 |
| rosa_roxburghii | Rroxscaffold_2G00096830 |
| rosa_rugosa | Rorug02G0423400 Rorug02G0423400 Rorug02G0423400 |
| rosa_samantha | Rh2AG484000 Rh2BG496200 Rh2CG470100 Rh2DG507100 |
| rosa_wichuraiana | Rw2G039660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 421, 2635 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 386 |
| Acc36I | ACCTGC | 5 cut(s) | 421, 1357, 1435, 1930, 2635 |
| AccB1I | GGYRCC | 2 cut(s) | 446, 514 |
| AccBSI | CCGCTC | 1 cut(s) | 424 |
| AccI | GTMKAC | 3 cut(s) | 90, 378, 1176 |
| AccII | CGCG | 2 cut(s) | 44, 383 |
| AclWI | GGATC | 7 cut(s) | 268, 483, 688, 1140, 3183, 3245, 3555 |
| AcoI | YGGCCR | 1 cut(s) | 2936 |
| AcsI | RAATTY | 8 cut(s) | 721, 744, 878, 1972, 1990, 2386, 2485, 3364 |
| AcuI | CTGAAG | 3 cut(s) | 288, 993, 1692 |
| AcyI | GRCGYC | 2 cut(s) | 447, 515 |
| AdeI | CACNNNGTG | 1 cut(s) | 1838 |
| AfaI | GTAC | 5 cut(s) | 41, 965, 1347, 1703, 2178 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1171, 1556, 3234 |
| AflIII | ACRYGT | 1 cut(s) | 66 |
| AgeI | ACCGGT | 1 cut(s) | 2774 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 2 cut(s) | 2127, 2764 |
| Alw21I | GWGCWC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| Alw26I | GTCTC | 4 cut(s) | 227, 533, 912, 3452 |
| Alw44I | GTGCAC | 2 cut(s) | 2072, 2658 |
| AlwI | GGATC | 7 cut(s) | 268, 483, 688, 1140, 3183, 3245, 3555 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1660 |
| AoxI | GGCC | 6 cut(s) | 456, 1295, 2889, 2893, 2936, 3563 |
| ApaLI | GTGCAC | 2 cut(s) | 2072, 2658 |
| ApeKI | GCWGC | 7 cut(s) | 5, 769, 918, 1364, 2380, 2565, 2785 |
| ApoI | RAATTY | 8 cut(s) | 721, 744, 878, 1972, 1990, 2386, 2485, 3364 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AsiGI | ACCGGT | 1 cut(s) | 2774 |
| AspA2I | CCTAGG | 1 cut(s) | 1445 |
| AspLEI | GCGC | 3 cut(s) | 385, 449, 517 |
| AspS9I | GGNCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| AsuC2I | CCSGG | 2 cut(s) | 35, 2174 |
| AsuII | TTCGAA | 1 cut(s) | 1602 |
| AsuNHI | GCTAGC | 1 cut(s) | 2972 |
| AvaII | GGWCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| AvrII | CCTAGG | 1 cut(s) | 1445 |
| AxyI | CCTNAGG | 1 cut(s) | 2952 |
| BaeGI | GKGCMC | 2 cut(s) | 2076, 2662 |
| BanI | GGYRCC | 2 cut(s) | 446, 514 |
| BanII | GRGCYC | 2 cut(s) | 195, 868 |
| Bbv12I | GWGCWC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| BbvI | GCAGC | 7 cut(s) | 17, 756, 930, 1351, 2367, 2577, 2797 |
| BccI | CCATC | 9 cut(s) | 38, 104, 245, 286, 2312, 2326, 2400, 2869, 3428 |
| BceAI | ACGGC | 2 cut(s) | 287, 359 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 488, 522, 1513, 1547, 3306, 3340 |
| BciT130I | CCWGG | 2 cut(s) | 2129, 2766 |
| BciVI | GTATCC | 1 cut(s) | 1171 |
| BclI | TGATCA | 3 cut(s) | 1267, 1690, 1963 |
| BcnI | CCSGG | 2 cut(s) | 35, 2174 |
| BcoDI | GTCTC | 4 cut(s) | 227, 533, 912, 3452 |
| BfaI | CTAG | 9 cut(s) | 414, 1112, 1166, 1446, 1736, 2148, 2595, 2673, 2973 |
| BfmI | CTRYAG | 6 cut(s) | 1365, 1461, 2381, 3160, 3507, 3559 |
| BfoI | RGCGCY | 2 cut(s) | 450, 518 |
| BfuAI | ACCTGC | 5 cut(s) | 421, 1357, 1435, 1930, 2635 |
| BfuI | GTATCC | 1 cut(s) | 1171 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 455 |
| BlnI | CCTAGG | 1 cut(s) | 1445 |
| BlpI | GCTNAGC | 1 cut(s) | 2352 |
| Bme1390I | CCNGG | 4 cut(s) | 35, 2129, 2174, 2766 |
| Bme18I | GGWCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| BmiI | GGNNCC | 7 cut(s) | 185, 448, 516, 1516, 1906, 2205, 3493 |
| BmrFI | CCNGG | 4 cut(s) | 35, 2129, 2174, 2766 |
| BmrI | ACTGGG | 1 cut(s) | 3129 |
| BmsI | GCATC | 8 cut(s) | 210, 289, 790, 1033, 1974, 2147, 2797, 3429 |
| BmtI | GCTAGC | 1 cut(s) | 2976 |
| BmuI | ACTGGG | 1 cut(s) | 3129 |
| BpmI | CTGGAG | 1 cut(s) | 2487 |
| Bpu10I | CCTNAGC | 2 cut(s) | 453, 888 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2352 |
| Bpu14I | TTCGAA | 1 cut(s) | 1602 |
| BpuEI | CTTGAG | 4 cut(s) | 911, 1470, 2945, 3087 |
| BpuMI | CCSGG | 2 cut(s) | 35, 2174 |
| Bsa29I | ATCGAT | 1 cut(s) | 1533 |
| BsaAI | YACGTR | 3 cut(s) | 1273, 1616, 2369 |
| BsaBI | GATNNNNATC | 1 cut(s) | 396 |
| BsaHI | GRCGYC | 2 cut(s) | 447, 515 |
| BsaI | GGTCTC | 2 cut(s) | 227, 533 |
| BsaJI | CCNNGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| BsaWI | WCCGGW | 2 cut(s) | 1238, 2774 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2485, 2515 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1171, 1556, 3234 |
| Bse118I | RCCGGY | 4 cut(s) | 358, 2774, 2891, 2934 |
| Bse21I | CCTNAGG | 1 cut(s) | 2952 |
| Bse3DI | GCAATG | 3 cut(s) | 492, 1575, 2637 |
| Bse8I | GATNNNNATC | 1 cut(s) | 396 |
| BseBI | CCWGG | 2 cut(s) | 2129, 2766 |
| BseCI | ATCGAT | 1 cut(s) | 1533 |
| BseDI | CCNNGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| BseJI | GATNNNNATC | 1 cut(s) | 396 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1171, 1556, 3234 |
| BseMI | GCAATG | 3 cut(s) | 492, 1575, 2637 |
| BseMII | CTCAG | 8 cut(s) | 129, 1326, 2343, 2627, 2723, 2966, 3440, 3638 |
| BseSI | GKGCMC | 2 cut(s) | 2076, 2662 |
| BseXI | GCAGC | 7 cut(s) | 17, 756, 930, 1351, 2367, 2577, 2797 |
| BseYI | CCCAGC | 2 cut(s) | 1142, 1879 |
| BsgI | GTGCAG | 1 cut(s) | 1908 |
| Bsh1236I | CGCG | 2 cut(s) | 44, 383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 199 |
| BshFI | GGCC | 6 cut(s) | 458, 1297, 2891, 2895, 2938, 3565 |
| BshNI | GGYRCC | 2 cut(s) | 446, 514 |
| BshTI | ACCGGT | 1 cut(s) | 2774 |
| BshVI | ATCGAT | 1 cut(s) | 1533 |
| BsiEI | CGRYCG | 1 cut(s) | 199 |
| BsiHKAI | GWGCWC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| BsiSI | CCGG | 8 cut(s) | 34, 359, 1239, 1902, 2174, 2775, 2892, 2935 |
| BslFI | GGGAC | 6 cut(s) | 66, 169, 460, 2208, 3350, 3477 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1171, 1556, 3234 |
| BsmAI | GTCTC | 4 cut(s) | 227, 533, 912, 3452 |
| BsmFI | GGGAC | 6 cut(s) | 66, 169, 460, 2208, 3350, 3477 |
| BsmI | GAATGC | 3 cut(s) | 921, 1440, 1642 |
| BsnI | GGCC | 6 cut(s) | 458, 1297, 2891, 2895, 2938, 3565 |
| Bso31I | GGTCTC | 2 cut(s) | 227, 533 |
| Bsp119I | TTCGAA | 1 cut(s) | 1602 |
| Bsp1286I | GDGCHC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| Bsp1407I | TGTACA | 1 cut(s) | 963 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2352 |
| Bsp19I | CCATGG | 1 cut(s) | 1555 |
| BspANI | GGCC | 6 cut(s) | 458, 1297, 2891, 2895, 2938, 3565 |
| BspCNI | CTCAG | 8 cut(s) | 130, 1327, 2344, 2626, 2722, 2965, 3439, 3637 |
| BspDI | ATCGAT | 1 cut(s) | 1533 |
| BspFNI | CGCG | 2 cut(s) | 44, 383 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 7 cut(s) | 185, 448, 516, 1516, 1906, 2205, 3493 |
| BspMAI | CTGCAG | 4 cut(s) | 1369, 2385, 3511, 3563 |
| BspMI | ACCTGC | 5 cut(s) | 421, 1357, 1435, 1930, 2635 |
| BspOI | GCTAGC | 1 cut(s) | 2976 |
| BspPI | GGATC | 7 cut(s) | 268, 483, 688, 1140, 3183, 3245, 3555 |
| BspT104I | TTCGAA | 1 cut(s) | 1602 |
| BspT107I | GGYRCC | 2 cut(s) | 446, 514 |
| BspTNI | GGTCTC | 2 cut(s) | 227, 533 |
| BsrBI | CCGCTC | 1 cut(s) | 424 |
| BsrDI | GCAATG | 3 cut(s) | 492, 1575, 2637 |
| BsrFI | RCCGGY | 4 cut(s) | 358, 2774, 2891, 2934 |
| BsrGI | TGTACA | 1 cut(s) | 963 |
| BssAI | RCCGGY | 4 cut(s) | 358, 2774, 2891, 2934 |
| BssECI | CCNNGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| BssNI | GRCGYC | 2 cut(s) | 447, 515 |
| BssT1I | CCWWGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| Bst2UI | CCWGG | 2 cut(s) | 2129, 2766 |
| Bst4CI | ACNGT | 7 cut(s) | 163, 532, 1761, 1851, 2166, 2440, 2700 |
| Bst6I | CTCTTC | 7 cut(s) | 264, 479, 644, 663, 848, 1177, 3623 |
| BstACI | GRCGYC | 2 cut(s) | 447, 515 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 11, 2110 |
| BstAUI | TGTACA | 1 cut(s) | 963 |
| BstBAI | YACGTR | 3 cut(s) | 1273, 1616, 2369 |
| BstBI | TTCGAA | 1 cut(s) | 1602 |
| BstDSI | CCRYGG | 1 cut(s) | 1555 |
| BstEII | GGTNACC | 1 cut(s) | 3072 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1169, 3232 |
| BstFNI | CGCG | 2 cut(s) | 44, 383 |
| BstH2I | RGCGCY | 2 cut(s) | 450, 518 |
| BstHHI | GCGC | 3 cut(s) | 385, 449, 517 |
| BstMAI | GTCTC | 4 cut(s) | 227, 533, 912, 3452 |
| BstMCI | CGRYCG | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 11, 353, 380, 455, 739, 898, 2110, 2920, 2935 |
| BstNI | CCWGG | 2 cut(s) | 2129, 2766 |
| BstNSI | RCATGY | 4 cut(s) | 389, 1025, 1304, 2918 |
| BstPI | GGTNACC | 1 cut(s) | 3072 |
| BstSCI | CCNGG | 4 cut(s) | 33, 2127, 2172, 2764 |
| BstSFI | CTRYAG | 6 cut(s) | 1365, 1461, 2381, 3160, 3507, 3559 |
| BstSLI | GKGCMC | 2 cut(s) | 2076, 2662 |
| BstSNI | TACGTA | 1 cut(s) | 1616 |
| BstUI | CGCG | 2 cut(s) | 44, 383 |
| BstV1I | GCAGC | 7 cut(s) | 17, 756, 930, 1351, 2367, 2577, 2797 |
| BstX2I | RGATCY | 4 cut(s) | 273, 488, 693, 3175 |
| BstYI | RGATCY | 4 cut(s) | 273, 488, 693, 3175 |
| Bsu15I | ATCGAT | 1 cut(s) | 1533 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2952 |
| BsuI | GTATCC | 1 cut(s) | 1171 |
| BsuRI | GGCC | 6 cut(s) | 458, 1297, 2891, 2895, 2938, 3565 |
| BsuTUI | ATCGAT | 1 cut(s) | 1533 |
| BtgI | CCRYGG | 1 cut(s) | 1555 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsI | GCAGTG | 1 cut(s) | 2470 |
| BtsIMutI | CAGTG | 7 cut(s) | 159, 264, 909, 1206, 1413, 1766, 2470 |
| BveI | ACCTGC | 5 cut(s) | 421, 1357, 1435, 1930, 2635 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1660 |
| CciI | TCATGA | 1 cut(s) | 100 |
| CfoI | GCGC | 3 cut(s) | 385, 449, 517 |
| Cfr10I | RCCGGY | 4 cut(s) | 358, 2774, 2891, 2934 |
| Cfr13I | GGNCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| ClaI | ATCGAT | 1 cut(s) | 1533 |
| CseI | GACGC | 3 cut(s) | 389, 1535, 2102 |
| CsiI | ACCWGGT | 1 cut(s) | 2764 |
| Csp6I | GTAC | 5 cut(s) | 40, 964, 1346, 1702, 2177 |
| CspAI | ACCGGT | 1 cut(s) | 2774 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3294, 3329 |
| CviQI | GTAC | 5 cut(s) | 40, 964, 1346, 1702, 2177 |
| DinI | GGCGCC | 2 cut(s) | 448, 516 |
| DraIII | CACNNNGTG | 1 cut(s) | 1838 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 386 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 386 |
| EaeI | YGGCCR | 1 cut(s) | 2936 |
| Eam1104I | CTCTTC | 7 cut(s) | 264, 479, 644, 663, 848, 1177, 3623 |
| EarI | CTCTTC | 7 cut(s) | 264, 479, 644, 663, 848, 1177, 3623 |
| EciI | GGCGGA | 2 cut(s) | 362, 434 |
| Ecl136II | GAGCTC | 2 cut(s) | 193, 866 |
| Eco105I | TACGTA | 1 cut(s) | 1616 |
| Eco130I | CCWWGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| Eco24I | GRGCYC | 2 cut(s) | 195, 868 |
| Eco31I | GGTCTC | 2 cut(s) | 227, 533 |
| Eco32I | GATATC | 1 cut(s) | 1455 |
| Eco47I | GGWCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| Eco53kI | GAGCTC | 2 cut(s) | 193, 866 |
| Eco57I | CTGAAG | 3 cut(s) | 288, 993, 1692 |
| Eco81I | CCTNAGG | 1 cut(s) | 2952 |
| Eco91I | GGTNACC | 1 cut(s) | 3072 |
| EcoICRI | GAGCTC | 2 cut(s) | 193, 866 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1169, 3232 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3491 |
| EcoO65I | GGTNACC | 1 cut(s) | 3072 |
| EcoRII | CCWGG | 2 cut(s) | 2127, 2764 |
| EcoRV | GATATC | 1 cut(s) | 1455 |
| EcoT14I | CCWWGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| EcoT38I | GRGCYC | 2 cut(s) | 195, 868 |
| EgeI | GGCGCC | 2 cut(s) | 448, 516 |
| EheI | GGCGCC | 2 cut(s) | 448, 516 |
| ErhI | CCWWGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| FaqI | GGGAC | 6 cut(s) | 66, 169, 460, 2208, 3350, 3477 |
| FauNDI | CATATG | 1 cut(s) | 1432 |
| FbaI | TGATCA | 3 cut(s) | 1267, 1690, 1963 |
| FblI | GTMKAC | 3 cut(s) | 90, 378, 1176 |
| FriOI | GRGCYC | 2 cut(s) | 195, 868 |
| FseI | GGCCGGCC | 1 cut(s) | 2895 |
| FspBI | CTAG | 9 cut(s) | 414, 1112, 1166, 1446, 1736, 2148, 2595, 2673, 2973 |
| GlaI | GCGC | 3 cut(s) | 384, 448, 516 |
| GsaI | CCCAGC | 2 cut(s) | 1146, 1883 |
| GsuI | CTGGAG | 1 cut(s) | 2487 |
| HaeII | RGCGCY | 2 cut(s) | 450, 518 |
| HaeIII | GGCC | 6 cut(s) | 458, 1297, 2891, 2895, 2938, 3565 |
| HapII | CCGG | 8 cut(s) | 34, 359, 1239, 1902, 2174, 2775, 2892, 2935 |
| HgaI | GACGC | 3 cut(s) | 389, 1535, 2102 |
| HhaI | GCGC | 3 cut(s) | 385, 449, 517 |
| Hin1I | GRCGYC | 2 cut(s) | 447, 515 |
| Hin6I | GCGC | 3 cut(s) | 383, 447, 515 |
| HinP1I | GCGC | 3 cut(s) | 383, 447, 515 |
| HincII | GTYRAC | 2 cut(s) | 91, 379 |
| HindII | GTYRAC | 2 cut(s) | 91, 379 |
| HpaII | CCGG | 8 cut(s) | 34, 359, 1239, 1902, 2174, 2775, 2892, 2935 |
| Hpy99I | CGWCG | 6 cut(s) | 92, 95, 98, 290, 380, 383 |
| HpyCH4III | ACNGT | 7 cut(s) | 163, 532, 1761, 1851, 2166, 2440, 2700 |
| HpyCH4IV | ACGT | 5 cut(s) | 66, 1272, 1615, 1717, 2368 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 11, 353, 380, 455, 739, 898, 2110, 2920, 2935 |
| HpySE526I | ACGT | 5 cut(s) | 66, 1272, 1615, 1717, 2368 |
| Hsp92I | GRCGYC | 2 cut(s) | 447, 515 |
| HspAI | GCGC | 3 cut(s) | 383, 447, 515 |
| KasI | GGCGCC | 2 cut(s) | 446, 514 |
| KroI | GCCGGC | 1 cut(s) | 2891 |
| KroNI | GCCGGC | 1 cut(s) | 2893 |
| Ksp22I | TGATCA | 3 cut(s) | 1267, 1690, 1963 |
| LmnI | GCTCC | 8 cut(s) | 57, 421, 863, 1592, 1904, 2506, 2953, 3512 |
| Lsp1109I | GCAGC | 7 cut(s) | 17, 756, 930, 1351, 2367, 2577, 2797 |
| LweI | GCATC | 8 cut(s) | 210, 289, 790, 1033, 1974, 2147, 2797, 3429 |
| MabI | ACCWGGT | 1 cut(s) | 2764 |
| MaeI | CTAG | 9 cut(s) | 414, 1112, 1166, 1446, 1736, 2148, 2595, 2673, 2973 |
| MaeII | ACGT | 5 cut(s) | 66, 1272, 1615, 1717, 2368 |
| MbiI | CCGCTC | 1 cut(s) | 424 |
| MflI | RGATCY | 4 cut(s) | 273, 488, 693, 3175 |
| MhlI | GDGCHC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| Mly113I | GGCGCC | 2 cut(s) | 447, 515 |
| MlyI | GAGTC | 1 cut(s) | 149 |
| MmeI | TCCRAC | 6 cut(s) | 234, 241, 306, 551, 2881, 3374 |
| MroNI | GCCGGC | 1 cut(s) | 2891 |
| MseI | TTAA | 2 cut(s) | 2261, 3498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 105 |
| MspA1I | CMGCKG | 3 cut(s) | 8, 1879, 2233 |
| MspI | CCGG | 8 cut(s) | 34, 359, 1239, 1902, 2174, 2775, 2892, 2935 |
| MspR9I | CCNGG | 4 cut(s) | 35, 2129, 2174, 2766 |
| Mva1269I | GAATGC | 3 cut(s) | 921, 1440, 1642 |
| MvaI | CCWGG | 2 cut(s) | 2129, 2766 |
| MvnI | CGCG | 2 cut(s) | 44, 383 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 11, 353, 380, 455, 739, 898, 2110, 2920, 2935 |
| NaeI | GCCGGC | 1 cut(s) | 2893 |
| NarI | GGCGCC | 2 cut(s) | 447, 515 |
| NciI | CCSGG | 2 cut(s) | 35, 2174 |
| NcoI | CCATGG | 1 cut(s) | 1555 |
| NdeI | CATATG | 1 cut(s) | 1432 |
| NgoMIV | GCCGGC | 1 cut(s) | 2891 |
| NheI | GCTAGC | 1 cut(s) | 2972 |
| NlaIV | GGNNCC | 7 cut(s) | 185, 448, 516, 1516, 1906, 2205, 3493 |
| NmeAIII | GCCGAG | 1 cut(s) | 523 |
| NmuCI | GTSAC | 5 cut(s) | 163, 751, 1662, 2616, 3072 |
| NspI | RCATGY | 4 cut(s) | 389, 1025, 1304, 2918 |
| NspV | TTCGAA | 1 cut(s) | 1602 |
| PaeI | GCATGC | 1 cut(s) | 2918 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PaqCI | CACCTGC | 2 cut(s) | 421, 2635 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 93, 294, 387, 573 |
| PctI | GAATGC | 3 cut(s) | 921, 1440, 1642 |
| PdiI | GCCGGC | 1 cut(s) | 2893 |
| PfeI | GAWTC | 9 cut(s) | 523, 931, 1469, 2242, 2302, 2681, 3257, 3386, 3410 |
| PfoI | TCCNGGA | 1 cut(s) | 33 |
| PinAI | ACCGGT | 1 cut(s) | 2774 |
| PleI | GAGTC | 1 cut(s) | 148 |
| PluTI | GGCGCC | 2 cut(s) | 450, 518 |
| PpsI | GAGTC | 1 cut(s) | 148 |
| Ppu21I | YACGTR | 3 cut(s) | 1273, 1616, 2369 |
| PpuMI | RGGWCCY | 1 cut(s) | 3491 |
| Psp124BI | GAGCTC | 2 cut(s) | 195, 868 |
| Psp5II | RGGWCCY | 1 cut(s) | 3491 |
| Psp6I | CCWGG | 2 cut(s) | 2127, 2764 |
| PspEI | GGTNACC | 1 cut(s) | 3072 |
| PspFI | CCCAGC | 2 cut(s) | 1142, 1879 |
| PspGI | CCWGG | 2 cut(s) | 2127, 2764 |
| PspN4I | GGNNCC | 7 cut(s) | 185, 448, 516, 1516, 1906, 2205, 3493 |
| PspPI | GGNCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| PspPPI | RGGWCCY | 1 cut(s) | 3491 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1596, 1628 |
| PstI | CTGCAG | 4 cut(s) | 1369, 2385, 3511, 3563 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1660 |
| PsuI | RGATCY | 4 cut(s) | 273, 488, 693, 3175 |
| PvuII | CAGCTG | 2 cut(s) | 8, 1879 |
| RigI | GGCCGGCC | 1 cut(s) | 2895 |
| RsaI | GTAC | 5 cut(s) | 41, 965, 1347, 1703, 2178 |
| RsaNI | GTAC | 5 cut(s) | 40, 964, 1346, 1702, 2177 |
| RseI | CAYNNNNRTG | 1 cut(s) | 105 |
| SacI | GAGCTC | 2 cut(s) | 195, 868 |
| SalI | GTCGAC | 2 cut(s) | 89, 377 |
| SaqAI | TTAA | 2 cut(s) | 2261, 3498 |
| Sau96I | GGNCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| SchI | GAGTC | 1 cut(s) | 149 |
| ScrFI | CCNGG | 4 cut(s) | 35, 2129, 2174, 2766 |
| SduI | GDGCHC | 7 cut(s) | 195, 266, 868, 2059, 2076, 2662, 3376 |
| SexAI | ACCWGGT | 1 cut(s) | 2764 |
| SfaNI | GCATC | 8 cut(s) | 210, 289, 790, 1033, 1974, 2147, 2797, 3429 |
| SfcI | CTRYAG | 6 cut(s) | 1365, 1461, 2381, 3160, 3507, 3559 |
| SfoI | GGCGCC | 2 cut(s) | 448, 516 |
| SfuI | TTCGAA | 1 cut(s) | 1602 |
| SgrAI | CRCCGGYG | 1 cut(s) | 358 |
| SgrDI | CGTCGACG | 2 cut(s) | 89, 377 |
| SinI | GGWCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 105 |
| SmlI | CTYRAG | 4 cut(s) | 926, 1485, 2924, 3102 |
| SmoI | CTYRAG | 4 cut(s) | 926, 1485, 2924, 3102 |
| SnaBI | TACGTA | 1 cut(s) | 1616 |
| SphI | GCATGC | 1 cut(s) | 2918 |
| SspDI | GGCGCC | 2 cut(s) | 446, 514 |
| SspI | AATATT | 3 cut(s) | 839, 3205, 3346 |
| SspMI | CTAG | 9 cut(s) | 414, 1112, 1166, 1446, 1736, 2148, 2595, 2673, 2973 |
| SstI | GAGCTC | 2 cut(s) | 195, 868 |
| StyD4I | CCNGG | 4 cut(s) | 33, 2127, 2172, 2764 |
| StyI | CCWWGG | 4 cut(s) | 1058, 1445, 1555, 2903 |
| TaaI | ACNGT | 7 cut(s) | 163, 532, 1761, 1851, 2166, 2440, 2700 |
| TaiI | ACGT | 5 cut(s) | 69, 1275, 1618, 1720, 2371 |
| TaqI | TCGA | 9 cut(s) | 90, 195, 297, 378, 390, 1533, 1602, 1944, 3282 |
| TatI | WGTACW | 1 cut(s) | 963 |
| TauI | GCSGC | 5 cut(s) | 47, 452, 520, 1300, 2233 |
| TfiI | GAWTC | 9 cut(s) | 523, 931, 1469, 2242, 2302, 2681, 3257, 3386, 3410 |
| Tru1I | TTAA | 2 cut(s) | 2261, 3498 |
| Tru9I | TTAA | 2 cut(s) | 2261, 3498 |
| TscAI | CASTG | 7 cut(s) | 166, 271, 909, 1213, 1420, 1766, 2470 |
| TseFI | GTSAC | 5 cut(s) | 163, 751, 1662, 2616, 3072 |
| TseI | GCWGC | 7 cut(s) | 5, 769, 918, 1364, 2380, 2565, 2785 |
| Tsp45I | GTSAC | 5 cut(s) | 163, 751, 1662, 2616, 3072 |
| TspGWI | ACGGA | 4 cut(s) | 399, 1689, 1802, 2506 |
| TspRI | CASTG | 7 cut(s) | 166, 271, 909, 1213, 1420, 1766, 2470 |
| VneI | GTGCAC | 2 cut(s) | 2072, 2658 |
| VpaK11BI | GGWCC | 5 cut(s) | 183, 1055, 1697, 3491, 3614 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1169, 3232 |
| XapI | RAATTY | 8 cut(s) | 721, 744, 878, 1972, 1990, 2386, 2485, 3364 |
| XbaI | TCTAGA | 1 cut(s) | 2672 |
| XceI | RCATGY | 4 cut(s) | 389, 1025, 1304, 2918 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1758 |
| XmaJI | CCTAGG | 1 cut(s) | 1445 |
| XmiI | GTMKAC | 3 cut(s) | 90, 378, 1176 |
| XspI | CTAG | 9 cut(s) | 414, 1112, 1166, 1446, 1736, 2148, 2595, 2673, 2973 |