Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004600

Physical Location & Seq

Genomic Coordinates Reverse (-)

54440099 .. 54448379

Gene Structure 8281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0423400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGGGAGGCACCGCATTCCGCGTGAACCCATGATTGACCGGCGTGGCTACCCTCTTGAAGGACCTTATGGTAGAGCCCCTCCTGTGCCTCGGCAGCTGCCCCATCCTGCGTTGTTGGAGGAAGAACTTGAAATGCAGCATGCTGAGATTCGGAGGCTCTTAGCTGATAACCGGAGGCTGGTGGAGGACCGAATGGCATTGCAGCATGATCTTGGTGCTGCCAAGGAAGAAATTCATCGCATGAATATTGCCTTTTCTGATATTCGCGCCGAGGAAGAACTGCAGTCGAGGGAGCTCTTTGAGAAAGCAAGAAAATTGGAAGCTGATCTTCGGGGAGCTGAGCCGTTTAAAAATGAGGCTAAACAACTACGCGGTGAAGTTCAGAAGCTGAATGGCGTTAGGAAGGAACTTTCCACACAAGTGCAGACTCTCACACAGGACCTTGTAAAGTTGCAAGCTGATAATCAACAGATTCCTTTGCTAAAGTCTGAGATTGATGGTCTGCACCAGGAGCTTATGCATGCTAGAAGTGCAATTGATTATGAAAAGAAGGCAAATATTGAGCTTATGGAACAGAGACAGGCAATGGAGAATAACCTAGTTTCTATGGCTCGTGAAGTTGAGAAACTTCGTGCAGAACTTGCTAGAGTTGATGGTAGACCGTGGGGTGCAGGTGGACAATATGGGATGAGTTTCAGCAGCCCAGATGGAAGCTTTCCTGCTCCGTATGGAGATGGATATGGGATGCATATGGGTATGCCTGATAAAGGACCGATGTATGGGCCAGGCCCAACTTTGTGGGGAGGTTCGGAAAAGCTGCGCATGCCTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

279

Amino Acids

31.75

Weight (kDa)

6.48

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42820
fragaria_vesca	FvH4_6g37830 FvH4_6g37840
malus_domestica	MD09G1155500.v1.1 MD17G1141500.v1.1
prunus_persica	Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1
pyrus_communis	pycom09g07440 pycom17g13490
rosa_chinensis	RchiOBHm_Chr2g0150951 RchiOBHm_Chr2g0150981
rosa_laevigata	RLG00000020519 RLG00000020520
rosa_multiflora	Rmu_sc0000185.1_g000031 Rmu_sc0000185.1_g000032
rosa_roxburghii	Rroxscaffold_2G00096800 Rroxscaffold_2G00096820
rosa_rugosa	Rorug02G0423400 Rorug02G0423400
rosa_samantha	Rh2AG484100 Rh2AG484200 Rh2BG496300 Rh2BG496400 Rh2CG470200 Rh2CG470300 Rh2DG507200
rosa_wichuraiana	Rw2G039670 Rw2G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	665
Acc16I	TGCGCA	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	3 cut(s)	25, 270, 375
AciI	CCGC	3 cut(s)	16, 23, 375
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	4 cut(s)	62, 181, 770, 782
AgsI	TTSAA	2 cut(s)	62, 134
AjnI	CCWGG	2 cut(s)	510, 787
AleI	CACNNNNGTG	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	785, 790
ApeKI	GCWGC	7 cut(s)	97, 100, 139, 205, 221, 702, 820
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	272, 825
AspS9I	GGNCC	6 cut(s)	65, 190, 442, 773, 785, 791
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	4 cut(s)	65, 190, 442, 773
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	82, 300
BauI	CACGAG	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 807
BccI	CCATC	5 cut(s)	114, 494, 650, 704, 731
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	512, 789
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	528, 602, 648
BfmI	CTRYAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	665
BisI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 821
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	7 cut(s)	99, 102, 141, 207, 223, 704, 822
Bme1390I	CCNGG	2 cut(s)	512, 789
Bme18I	GGWCC	4 cut(s)	65, 190, 442, 773
BmgT120I	GGNCC	6 cut(s)	65, 190, 442, 773, 785, 791
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	512, 789
BmsI	GCATC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaJI	CCNNGG	4 cut(s)	92, 225, 273, 665
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 181, 770, 782
Bse118I	RCCGGY	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	200, 594
BseBI	CCWGG	2 cut(s)	512, 789
BseDI	CCNNGG	4 cut(s)	92, 225, 273, 665
BseGI	GGATG	3 cut(s)	106, 696, 753
BseLI	CCNNNNNNNGG	4 cut(s)	62, 181, 770, 782
BseMI	GCAATG	2 cut(s)	200, 594
BseMII	CTCAG	3 cut(s)	138, 333, 483
BseXI	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 807
BsgI	GTGCAG	4 cut(s)	446, 491, 657, 693
Bsh1236I	CGCG	3 cut(s)	25, 270, 375
BshFI	GGCC	2 cut(s)	787, 792
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	43, 175
BslI	CCNNNNNNNGG	4 cut(s)	62, 181, 770, 782
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	787, 792
Bsp1286I	GDGCHC	2 cut(s)	82, 300
Bsp143I	GATC	2 cut(s)	211, 328
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	16, 23, 375
BspANI	GGCC	2 cut(s)	787, 792
BspCNI	CTCAG	3 cut(s)	139, 334, 484
BspFNI	CGCG	3 cut(s)	25, 270, 375
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	200, 594
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	92, 225, 273, 665
BssMI	GATC	2 cut(s)	211, 328
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	512, 789
Bst4CI	ACNGT	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	144, 459, 525, 827
BstDEI	CTNAG	4 cut(s)	147, 163, 342, 492
BstDSI	CCRYGG	1 cut(s)	665
BstENI	CCTNNNNNAGG	2 cut(s)	60, 768
BstF5I	GGATG	3 cut(s)	106, 696, 753
BstFNI	CGCG	3 cut(s)	25, 270, 375
BstHHI	GCGC	2 cut(s)	272, 825
BstKTI	GATC	2 cut(s)	214, 331
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	2 cut(s)	211, 328
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 826
BstNI	CCWGG	2 cut(s)	512, 789
BstNSI	RCATGY	3 cut(s)	146, 527, 829
BstSCI	CCNGG	2 cut(s)	510, 787
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	3 cut(s)	25, 270, 375
BstV1I	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 807
BstXI	CCANNNNNNTGG	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	787, 792
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	106, 696, 753
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	4 cut(s)	144, 459, 525, 827
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	2 cut(s)	272, 825
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	6 cut(s)	65, 190, 442, 773, 785, 791
CviAII	CATG	6 cut(s)	34, 143, 209, 244, 524, 826
DdeI	CTNAG	4 cut(s)	147, 163, 342, 492
DpnI	GATC	2 cut(s)	213, 330
DpnII	GATC	2 cut(s)	211, 328
DraI	TTTAAA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	82, 300
Eco47I	GGWCC	4 cut(s)	65, 190, 442, 773
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	2 cut(s)	60, 768
EcoO109I	RGGNCCY	2 cut(s)	65, 442
EcoRII	CCWGG	2 cut(s)	510, 787
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	2 cut(s)	525, 753
EcoT38I	GRGCYC	2 cut(s)	82, 300
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	6 cut(s)	37, 146, 212, 247, 527, 829
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	6 cut(s)	33, 142, 208, 243, 523, 825
FauNDI	CATATG	1 cut(s)	753
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 821
FokI	GGATG	3 cut(s)	93, 703, 760
FriOI	GRGCYC	2 cut(s)	82, 300
Fsp4HI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 821
FspBI	CTAG	3 cut(s)	528, 602, 648
FspI	TGCGCA	1 cut(s)	824
GlaI	GCGC	2 cut(s)	271, 824
GluI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 821
HaeIII	GGCC	2 cut(s)	787, 792
HapII	CCGG	2 cut(s)	43, 175
HhaI	GCGC	2 cut(s)	272, 825
Hin1II	CATG	6 cut(s)	37, 146, 212, 247, 527, 829
Hin6I	GCGC	2 cut(s)	270, 823
HinP1I	GCGC	2 cut(s)	270, 823
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	3 cut(s)	151, 430, 475
HpaII	CCGG	2 cut(s)	43, 175
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	29, 662, 680
Hpy188I	TCNGA	5 cut(s)	156, 262, 387, 493, 814
Hpy188III	TCNNGA	2 cut(s)	59, 617
Hpy8I	GTNNAC	3 cut(s)	29, 662, 680
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	3 cut(s)	56, 400, 547
HpyCH4III	ACNGT	1 cut(s)	666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 826
HpyF3I	CTNAG	4 cut(s)	147, 163, 342, 492
Hsp92II	CATG	6 cut(s)	37, 146, 212, 247, 527, 829
HspAI	GCGC	2 cut(s)	270, 823
Kzo9I	GATC	2 cut(s)	211, 328
LmnI	GCTCC	4 cut(s)	295, 338, 514, 730
Lsp1109I	GCAGC	7 cut(s)	87, 109, 151, 208, 217, 714, 807
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	3 cut(s)	528, 602, 648
MalI	GATC	2 cut(s)	213, 330
MboI	GATC	2 cut(s)	211, 328
MboII	GAAGA	4 cut(s)	137, 242, 290, 323
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	2 cut(s)	82, 300
MluCI	AATT	3 cut(s)	234, 317, 537
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	525, 753
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	2 cut(s)	43, 175
MspR9I	CCNGG	2 cut(s)	512, 789
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	512, 789
MvnI	CGCG	3 cut(s)	25, 270, 375
MwoI	GCNNNNNNNGC	5 cut(s)	97, 514, 533, 644, 826
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	2 cut(s)	211, 328
NlaIII	CATG	6 cut(s)	37, 146, 212, 247, 527, 829
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	2 cut(s)	73, 298
NsbI	TGCGCA	1 cut(s)	824
NsiI	ATGCAT	2 cut(s)	525, 753
NspI	RCATGY	3 cut(s)	146, 527, 829
OliI	CACNNNNGTG	1 cut(s)	422
PaeI	GCATGC	3 cut(s)	146, 527, 829
PaqCI	CACCTGC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	151, 475
PkrI	GCNGC	7 cut(s)	99, 102, 141, 207, 223, 704, 822
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	2 cut(s)	65, 442
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	2 cut(s)	65, 442
Psp6I	CCWGG	2 cut(s)	510, 787
PspGI	CCWGG	2 cut(s)	510, 787
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	6 cut(s)	65, 190, 442, 773, 785, 791
PspPPI	RGGWCCY	2 cut(s)	65, 442
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	7 cut(s)	98, 101, 140, 206, 222, 703, 821
Sau3AI	GATC	2 cut(s)	211, 328
Sau96I	GGNCC	6 cut(s)	65, 190, 442, 773, 785, 791
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	512, 789
SduI	GDGCHC	2 cut(s)	82, 300
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	4 cut(s)	65, 190, 442, 773
SmiMI	CAYNNNNRTG	1 cut(s)	422
SphI	GCATGC	3 cut(s)	146, 527, 829
Sse9I	AATT	3 cut(s)	234, 317, 537
SsiI	CCGC	3 cut(s)	16, 23, 375
SspI	AATATT	2 cut(s)	250, 562
SspMI	CTAG	3 cut(s)	528, 602, 648
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	510, 787
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	290
TaqII	GACCGA	2 cut(s)	207, 790
TasI	AATT	3 cut(s)	234, 317, 537
TfiI	GAWTC	2 cut(s)	151, 475
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	7 cut(s)	97, 100, 139, 205, 221, 702, 820
TspDTI	ATGAA	3 cut(s)	227, 260, 561
TspGWI	ACGGA	1 cut(s)	717
VpaK11BI	GGWCC	4 cut(s)	65, 190, 442, 773
XagI	CCTNNNNNAGG	2 cut(s)	60, 768
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	3 cut(s)	146, 527, 829
XmiI	GTMKAC	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	528, 602, 648
Zsp2I	ATGCAT	2 cut(s)	525, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.