Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000185.1

Orthogroup ID

OG0004600

Physical Location & Seq

Genomic Coordinates Reverse (-)

139517 .. 140678

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000185.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgggtgttcttgcaacgattgctaagaatttggatacattgatcgggccaggagtcacacttctttatcctttatatgcaacaatgagagcaatagagaacccttctgcactagacgatcagcagtggcttacatattgggttttatattctttgatcacattattcgagctattctgttggaaagtccttgcttggattccaatatggccatatttgaagctgtttttttgcatgtggttggtgttgccaaaattcaatggagctgcctacatctacgaaaatattgtgagaaaatatgtgaagcccagtgactatatcaattttatcagctcatcatcatcaaagcgcccagagggacagaataaggtcctccaaatgatgagcctggatgcaaggaaatcagtcgagcgttttatcgatcaatacggacccgaggctttcgaaagagtcgtcaaagcagctgaaagagaagcgaggaagcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

162

Amino Acids

18.88

Weight (kDa)

9.02

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42820
fragaria_vesca	FvH4_6g37830 FvH4_6g37840
malus_domestica	MD09G1155500.v1.1 MD17G1141500.v1.1
prunus_persica	Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1
pyrus_communis	pycom09g07440 pycom17g13490
rosa_chinensis	RchiOBHm_Chr2g0150951 RchiOBHm_Chr2g0150981
rosa_laevigata	RLG00000020519 RLG00000020520
rosa_multiflora	Rmu_sc0000185.1_g000031 Rmu_sc0000185.1_g000032
rosa_roxburghii	Rroxscaffold_2G00096800 Rroxscaffold_2G00096820
rosa_rugosa	Rorug02G0423400 Rorug02G0423400
rosa_samantha	Rh2AG484100 Rh2AG484200 Rh2BG496300 Rh2BG496400 Rh2CG470200 Rh2CG470300 Rh2DG507200
rosa_wichuraiana	Rw2G039670 Rw2G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	28, 254
AgsI	TTSAA	2 cut(s)	220, 259
AjnI	CCWGG	2 cut(s)	49, 387
AluBI	AGCT	5 cut(s)	172, 223, 266, 333, 464
AluI	AGCT	5 cut(s)	172, 223, 266, 333, 464
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	47, 209
ApeKI	GCWGC	2 cut(s)	266, 461
ApoI	RAATTY	2 cut(s)	28, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	47, 370, 431
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	370, 431
BalI	TGGCCA	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	253, 473
BciT130I	CCWGG	2 cut(s)	51, 389
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	156
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	267, 462
BlsI	GCNGC	2 cut(s)	268, 463
Bme1390I	CCNGG	2 cut(s)	51, 389
Bme18I	GGWCC	2 cut(s)	370, 431
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	3 cut(s)	47, 370, 431
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	51, 389
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	51, 389
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	253, 473
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	49, 211
BshVI	ATCGAT	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	49, 211
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	42, 118, 156, 421
BspANI	GGCC	2 cut(s)	49, 211
BspDI	ATCGAT	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	42, 118, 156, 421
Bst2UI	CCWGG	2 cut(s)	51, 389
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	45, 121, 159, 424
BstMBI	GATC	4 cut(s)	42, 118, 156, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	51, 389
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	49, 387
BstV1I	GCAGC	2 cut(s)	253, 473
Bsu15I	ATCGAT	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	49, 211
BsuTUI	ATCGAT	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	3 cut(s)	131, 316, 484
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	47, 370, 431
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	4 cut(s)	44, 120, 158, 423
DpnII	GATC	4 cut(s)	42, 118, 156, 421
EaeI	YGGCCR	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	370, 431
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	49, 387
FaeI	CATG	1 cut(s)	238
FaiI	YATR	9 cut(s)	76, 78, 136, 148, 208, 214, 236, 300, 318
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	267, 462
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	267, 462
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	267, 462
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	49, 211
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	54, 199, 450
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	14, 80, 110, 234, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	42, 118, 156, 421
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	36, 63, 322, 366, 374, 401
Lsp1109I	GCAGC	2 cut(s)	253, 473
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	55, 311
MalI	GATC	4 cut(s)	44, 120, 158, 423
MboI	GATC	4 cut(s)	42, 118, 156, 421
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	3 cut(s)	28, 254, 322
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	63, 459
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	349, 383, 430, 471
Mox20I	TGGCCA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	211
Msp20I	TGGCCA	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	51, 389
MvaI	CCWGG	2 cut(s)	51, 389
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	42, 118, 156, 421
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	55, 311
NspI	RCATGY	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	268, 463
PleI	GAGTC	2 cut(s)	62, 458
PpsI	GAGTC	2 cut(s)	62, 458
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	49, 387
PspGI	CCWGG	2 cut(s)	49, 387
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	47, 370, 431
PspPPI	RGGWCCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	464
SatI	GCNGC	2 cut(s)	267, 462
Sau3AI	GATC	4 cut(s)	42, 118, 156, 421
Sau96I	GGNCC	3 cut(s)	47, 370, 431
SchI	GAGTC	2 cut(s)	63, 459
ScrFI	CCNGG	2 cut(s)	51, 389
SetI	ASST	6 cut(s)	174, 225, 268, 335, 372, 466
SfaNI	GCATC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	2 cut(s)	370, 431
Sse9I	AATT	3 cut(s)	28, 254, 322
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	49, 387
TaqI	TCGA	4 cut(s)	168, 408, 420, 444
TasI	AATT	3 cut(s)	28, 254, 322
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	2 cut(s)	131, 316
TseFI	GTSAC	2 cut(s)	55, 311
TseI	GCWGC	2 cut(s)	266, 461
Tsp45I	GTSAC	2 cut(s)	55, 311
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	131, 316
VpaK11BI	GGWCC	2 cut(s)	370, 431
XapI	RAATTY	2 cut(s)	28, 254
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.