Rroxscaffold_2G00096820

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004600
Physical Location & Seq
Forward (+)
18142700 .. 18143992
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096820.1

Sequence Viewer

Length: 366 bp
ATGGGTGTTCTTGCAGCGATTGCCAAGAATTTGGACACACTAATCGGGCCCGGAGTCACACTTCTTTATCCTTTGATTCTAATATGGCCATATATGAAGCTATTGTTCTGCATCTGGCTGGTGCTGCCAATATTCAACGGGGCAGCCTATGTTTATGAGAATATTGTGAGAAAATATGTGAAGCCCGGGGACTATATCAATTGGAGCTCATCGTCATCATCAAAACACCCAGAGAGACAGAAGAAGGTTATCCAAATGTTGAGCCTCGATGGAAGGAAGTCGGTAGAGCGTTTTATCGATCACCATGGACCAGAGGCTTTCGAGAGGGTCGTCAAAGCGGCTGAAAGAGAAGCTAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

121

Amino Acids

13.85

Weight (kDa)

9.55

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 59 6.3e-09 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 28
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 3 cut(s) 100, 207, 353
AluI AGCT 3 cut(s) 100, 207, 353
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 47, 86
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 14, 124, 143
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 47, 48, 308
AsuC2I CCSGG 3 cut(s) 51, 186, 187
AsuHPI GGTGA 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 88
BanII GRGCYC 2 cut(s) 51, 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 26, 111, 155
BccI CCATC 1 cut(s) 263
BcnI CCSGG 3 cut(s) 51, 186, 187
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 354
BisI GCNGC 4 cut(s) 15, 125, 144, 339
BlsI GCNGC 4 cut(s) 16, 126, 145, 340
Bme1390I CCNGG 3 cut(s) 51, 186, 187
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 47, 48, 308
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 51, 186, 187
BmsI GCATC 1 cut(s) 120
BpuMI CCSGG 3 cut(s) 51, 186, 187
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 185, 186, 304
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 185, 186, 304
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 3 cut(s) 26, 111, 155
BshFI GGCC 2 cut(s) 49, 88
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 51, 186
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 49, 88
BsoBI CYCGRG 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 51, 209
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 49, 88
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 185, 186, 304
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 304
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 20, 124
BstSCI CCNGG 3 cut(s) 49, 184, 185
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 26, 111, 155
BstXI CCANNNNNNTGG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 2 cut(s) 49, 88
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 47, 48, 308
Cfr9I CCCGGG 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 1 cut(s) 305
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 51, 209
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 51, 209
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 1 cut(s) 308
FaiI YATR 9 cut(s) 85, 91, 93, 95, 150, 156, 177, 195, 306
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 15, 125, 144, 339
FriOI GRGCYC 2 cut(s) 51, 209
Fsp4HI GCNGC 4 cut(s) 15, 125, 144, 339
FspBI CTAG 1 cut(s) 354
GluI GCNGC 4 cut(s) 15, 125, 144, 339
HaeIII GGCC 2 cut(s) 49, 88
HapII CCGG 2 cut(s) 51, 186
Hin1II CATG 1 cut(s) 308
HinfI GANTC 2 cut(s) 54, 76
HpaII CCGG 2 cut(s) 51, 186
HphI GGTGA 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 238, 267
HpyCH4V TGCA 2 cut(s) 14, 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 124
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 64, 100, 104, 199, 243, 324
Lsp1109I GCAGC 3 cut(s) 26, 111, 155
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 253
MfeI CAATTG 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 51, 209
MlsI TGGCCA 1 cut(s) 88
MluCI AATT 2 cut(s) 28, 199
MluNI TGGCCA 1 cut(s) 88
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 3 cut(s) 275, 307, 318
Mox20I TGGCCA 1 cut(s) 88
MscI TGGCCA 1 cut(s) 88
Msp20I TGGCCA 1 cut(s) 88
MspI CCGG 2 cut(s) 51, 186
MspR9I CCNGG 3 cut(s) 51, 186, 187
MunI CAATTG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 20, 124
NciI CCSGG 3 cut(s) 51, 186, 187
NcoI CCATGG 1 cut(s) 304
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 4 cut(s) 16, 126, 145, 340
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 49
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 3 cut(s) 47, 48, 308
SacI GAGCTC 1 cut(s) 209
SatI GCNGC 4 cut(s) 15, 125, 144, 339
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 3 cut(s) 47, 48, 308
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 3 cut(s) 51, 186, 187
SduI GDGCHC 2 cut(s) 51, 209
SetI ASST 4 cut(s) 102, 209, 249, 355
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 187
Sse9I AATT 2 cut(s) 28, 199
SsiI CCGC 1 cut(s) 338
SspI AATATT 2 cut(s) 132, 163
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 49, 184, 185
StyI CCWWGG 1 cut(s) 304
TaqI TCGA 3 cut(s) 267, 297, 321
TasI AATT 2 cut(s) 28, 199
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 76
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 14, 124, 143
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 185
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.