FvH4_6g37830

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004600
Physical Location & Seq
Reverse (-)
29791548 .. 29793210
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37830.t1

Sequence Viewer

Length: 498 bp
ATGGGTGTTCTTGCAGCGATTGCTAAGAATTTGGATACACTAATCGGGCCGGGAGTGACACTTCTTTATCCTTTATATGCAACAATGAGAGCAATAGAGAGCGCTTCCACACTAGACGATCAGCAGTGGCTAACATATTGGGTGCTGTACTCTTTCATCACATTATTCGAGCTCTTCTGTTGGAAAGTCCTCGCTTGGATTCCAATATGGCCATATATGAAGTTGTTGTTCTGCATCTGGCTGGTATTTCCAACATTCAACGGGGCAGCCTATGTTTACGAAAATATTGTGAGAAAATATGTGAAGCCTGGAAACTATATCAATTGGAGCTCATCATCATCATCATCATCCTCAAAACACCCAGAGGGACAGAAGAAGGTCATCCAAATGATGAGCCTCGACGGAAGGAAGTCGGTAGAGAGTTTTATCGATCACCATGGACCAGAGGCCTTCGAAAGGGTTGTCAAAGCGGCTGAAAGAGAAGCTAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

8.82

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 2e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 149
AfeI AGCGCT 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 3 cut(s) 172, 330, 485
AluI AGCT 3 cut(s) 172, 330, 485
Alw21I GWGCWC 2 cut(s) 174, 332
Aor51HI AGCGCT 1 cut(s) 103
AoxI GGCC 3 cut(s) 47, 209, 447
ApeKI GCWGC 2 cut(s) 14, 266
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 447, 479
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 47, 440
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 2 cut(s) 174, 332
Bbv12I GWGCWC 2 cut(s) 174, 332
BbvI GCAGC 2 cut(s) 26, 278
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 51
BfaI CTAG 2 cut(s) 113, 486
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 15, 267, 471
BlsI GCNGC 3 cut(s) 16, 268, 472
Bme1390I CCNGG 2 cut(s) 51, 309
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 47, 440
BmrFI CCNGG 2 cut(s) 51, 309
BmsI GCATC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 2 cut(s) 347, 381
BseLI CCNNNNNNNGG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 26, 278
BshFI GGCC 3 cut(s) 49, 211, 449
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 174, 332
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 3 cut(s) 49, 211, 449
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 2 cut(s) 174, 332
Bsp143I GATC 2 cut(s) 118, 430
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 1 cut(s) 470
BspANI GGCC 3 cut(s) 49, 211, 449
BspDI ATCGAT 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 2 cut(s) 118, 430
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 436
BstENI CCTNNNNNAGG 1 cut(s) 454
BstF5I GGATG 2 cut(s) 347, 381
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 121, 433
BstMBI GATC 2 cut(s) 118, 430
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 49, 307
BstV1I GCAGC 2 cut(s) 26, 278
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 49, 211, 449
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 2 cut(s) 347, 381
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 493
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 47, 440
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 437
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 120, 432
DpnII GATC 2 cut(s) 118, 430
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 172, 330
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 174, 332
Eco47I GGWCC 1 cut(s) 440
Eco47III AGCGCT 1 cut(s) 103
Eco53kI GAGCTC 2 cut(s) 172, 330
EcoICRI GAGCTC 2 cut(s) 172, 330
EcoNI CCTNNNNNAGG 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 2 cut(s) 174, 332
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 1 cut(s) 440
FaqI GGGAC 1 cut(s) 381
FatI CATG 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 15, 267, 471
FokI GGATG 2 cut(s) 334, 368
FriOI GRGCYC 2 cut(s) 174, 332
Fsp4HI GCNGC 3 cut(s) 15, 267, 471
FspBI CTAG 2 cut(s) 113, 486
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 15, 267, 471
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 49, 211, 449
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 440
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 370, 399, 460
HpyCH4V TGCA 3 cut(s) 14, 80, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 1 cut(s) 440
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 118, 430
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 7 cut(s) 63, 223, 227, 294, 321, 375, 456
Lsp1109I GCAGC 2 cut(s) 26, 278
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 113, 486
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 120, 432
MboI GATC 2 cut(s) 118, 430
MboII GAAGA 2 cut(s) 166, 385
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 174, 332
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 2 cut(s) 28, 322
MluNI TGGCCA 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 161, 275
MnlI CCTC 5 cut(s) 200, 358, 361, 407, 439
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 211
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 51, 309
MunI CAATTG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 436
NdeII GATC 2 cut(s) 118, 430
NlaIII CATG 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 453
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 3 cut(s) 16, 268, 472
Psp124BI GAGCTC 2 cut(s) 174, 332
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 47, 440
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 2 cut(s) 174, 332
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 3 cut(s) 15, 267, 471
Sau3AI GATC 2 cut(s) 118, 430
Sau96I GGNCC 2 cut(s) 47, 440
ScrFI CCNGG 2 cut(s) 51, 309
SduI GDGCHC 2 cut(s) 174, 332
SetI ASST 4 cut(s) 174, 332, 381, 487
SfaNI GCATC 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 2 cut(s) 28, 322
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 1 cut(s) 470
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 113, 486
SstI GAGCTC 2 cut(s) 174, 332
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 49, 307
StyI CCWWGG 1 cut(s) 436
TaqI TCGA 4 cut(s) 168, 399, 429, 453
TasI AATT 2 cut(s) 28, 322
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 14, 266
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 145, 233
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 454
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 113, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.