Rh2BG496300

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004600
Physical Location & Seq
Reverse (-)
70209918 .. 70211044
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG496300.1

Sequence Viewer

Length: 366 bp
ATGGGTGTTCTTGCAGCGATTGCCAAGAATTTGGATACACTAATCGGGCCCGGAGTGACACTTCTCTATCCTTTGATTCCTATATGGCCATATATGAAGCTATTGTTCTGCATCTGGCTGGTGTTGCCAATATTCAACGGGGCAGCCTATGTTTATGAGAATATTGTGAGAAAATATGTGAAGCCCGGGGACTATATAAATTGGAGCTCATCGTCATCATCAAAACACCCAGAGGGACAGAAGAAGGTCATCCAAATGTTGAGCCTCGATGGAAGGAAGTCGGTAGAGCATTTTATCGATCACCATGGATCAGAGGCTTTCGAGAGGGTCGTCAAAACGGCTGAAAGAGAAGCTAGGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

9.24

Isoelectric Point (pI)

19.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 22 - 59 9.2e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 28
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 3 cut(s) 100, 207, 353
AluI AGCT 3 cut(s) 100, 207, 353
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 47, 86
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 14, 143
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 47, 48
AsuC2I CCSGG 3 cut(s) 51, 186, 187
AsuHPI GGTGA 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 88
BanII GRGCYC 2 cut(s) 51, 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 26, 155
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 354
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 3 cut(s) 51, 186, 187
BfaI CTAG 2 cut(s) 354, 364
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 15, 144
BlsI GCNGC 2 cut(s) 16, 145
Bme1390I CCNGG 3 cut(s) 51, 186, 187
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 47, 48
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 51, 186, 187
BmsI GCATC 1 cut(s) 120
BpuMI CCSGG 3 cut(s) 51, 186, 187
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 185, 186, 304
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 185, 186, 304
BseGI GGATG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 26, 155
BshFI GGCC 2 cut(s) 49, 88
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 51, 186
BslFI GGGAC 2 cut(s) 203, 249
BsmFI GGGAC 2 cut(s) 203, 249
BsnI GGCC 2 cut(s) 49, 88
BsoBI CYCGRG 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 51, 209
Bsp143I GATC 2 cut(s) 298, 308
Bsp19I CCATGG 1 cut(s) 304
BspANI GGCC 2 cut(s) 49, 88
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 185, 186, 304
BssMI GATC 2 cut(s) 298, 308
BssT1I CCWWGG 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 2 cut(s) 301, 311
BstMBI GATC 2 cut(s) 298, 308
BstMWI GCNNNNNNNGC 2 cut(s) 20, 124
BstSCI CCNGG 3 cut(s) 49, 184, 185
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 26, 155
BstXI CCANNNNNNTGG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 88
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 47, 48
Cfr9I CCCGGG 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 1 cut(s) 305
DpnI GATC 2 cut(s) 300, 310
DpnII GATC 2 cut(s) 298, 308
EaeI YGGCCR 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 51, 209
Eco53kI GAGCTC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 51, 209
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 1 cut(s) 308
FaqI GGGAC 2 cut(s) 203, 249
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 15, 144
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 51, 209
Fsp4HI GCNGC 2 cut(s) 15, 144
FspBI CTAG 2 cut(s) 354, 364
GluI GCNGC 2 cut(s) 15, 144
HaeIII GGCC 2 cut(s) 49, 88
HapII CCGG 2 cut(s) 51, 186
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 76
HpaII CCGG 2 cut(s) 51, 186
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 238, 267
HpyCH4V TGCA 2 cut(s) 14, 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 124
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 298, 308
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 5 cut(s) 64, 100, 104, 199, 243
Lsp1109I GCAGC 2 cut(s) 26, 155
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 354, 364
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 300, 310
MboI GATC 2 cut(s) 298, 308
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 51, 209
MlsI TGGCCA 1 cut(s) 88
MluCI AATT 2 cut(s) 28, 199
MluNI TGGCCA 1 cut(s) 88
MnlI CCTC 4 cut(s) 226, 275, 307, 318
Mox20I TGGCCA 1 cut(s) 88
MscI TGGCCA 1 cut(s) 88
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 88
MspI CCGG 2 cut(s) 51, 186
MspR9I CCNGG 3 cut(s) 51, 186, 187
MwoI GCNNNNNNNGC 2 cut(s) 20, 124
NciI CCSGG 3 cut(s) 51, 186, 187
NcoI CCATGG 1 cut(s) 304
NdeII GATC 2 cut(s) 298, 308
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 16, 145
Psp124BI GAGCTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 49
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 2 cut(s) 47, 48
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 209
SatI GCNGC 2 cut(s) 15, 144
Sau3AI GATC 2 cut(s) 298, 308
Sau96I GGNCC 2 cut(s) 47, 48
ScrFI CCNGG 3 cut(s) 51, 186, 187
SduI GDGCHC 2 cut(s) 51, 209
SetI ASST 4 cut(s) 102, 209, 249, 355
SfaNI GCATC 1 cut(s) 120
SmaI CCCGGG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 28, 199
SspI AATATT 2 cut(s) 132, 163
SspMI CTAG 2 cut(s) 354, 364
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 49, 184, 185
StyI CCWWGG 1 cut(s) 304
TaqI TCGA 3 cut(s) 267, 297, 321
TasI AATT 2 cut(s) 28, 199
TfiI GAWTC 1 cut(s) 76
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 14, 143
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 185
XapI RAATTY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 185
XspI CTAG 2 cut(s) 354, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.