AT2G42820

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004600
Physical Location & Seq
Reverse (-)
17817244 .. 17818545
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42820.1

Sequence Viewer

Length: 477 bp
ATGGGTTTCATTATTGCGATTGCAAAACGTTTTGATGCTCTAGTTGGGCCTGGAGTCATGCTTCTCTATCCTCTGTATGCATCATTTCGAGCAATAGAGAGTCCAACAATGTTAGATGATCAACAATGGCTTACATATTGGATCATTTACTCTTTAATAACGATATTCGAGCTATCCGTTTGGAGAGTCCTTGCCTGGCTACCATTTTGGCCATACTTGAAGCTTTTGTTCTGTATGTGGTTGGTGCTACCAATGTTCAGTGGTGCAGCTTACATTTACTCCAATTTTGTTAGACAATACGTCAAAATTGGGATGAATGTTGGAGGAGGAACGAATTATACAGACGAACAAAGAAGAGTTTTACAGATGATGAGTCTTGATGCTAGAAAATCGGTTCAAGACTACGTTGACCGGTTTGGATGGGATTCTGTTGAGAAAGCAATCAAAGCGGCTGAAAAAGAAACTAGAAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

158

Amino Acids

18.5

Weight (kDa)

8.97

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 7e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 449
AclI AACGTT 1 cut(s) 28
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 209
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 220, 398
AhdI GACNNNNNGTC 1 cut(s) 299
AjnI CCWGG 2 cut(s) 49, 194
AluBI AGCT 3 cut(s) 172, 223, 269
AluI AGCT 3 cut(s) 172, 223, 269
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 47, 209
ApeKI GCWGC 1 cut(s) 266
AsiGI ACCGGT 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 211
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 51, 196
BclI TGATCA 1 cut(s) 118
BfaI CTAG 3 cut(s) 41, 384, 465
BisI GCNGC 2 cut(s) 267, 450
BlsI GCNGC 2 cut(s) 268, 451
Bme1390I CCNGG 2 cut(s) 51, 196
BmeRI GACNNNNNGTC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 51, 196
BmsI GCATC 3 cut(s) 25, 89, 370
BpmI CTGGAG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse118I RCCGGY 1 cut(s) 411
BseBI CCWGG 2 cut(s) 51, 196
BseGI GGATG 2 cut(s) 318, 425
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 2 cut(s) 49, 211
BshTI ACCGGT 1 cut(s) 411
BsiSI CCGG 1 cut(s) 412
BsnI GGCC 2 cut(s) 49, 211
Bsp143I GATC 2 cut(s) 118, 141
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 49, 211
BspPI GGATC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssMI GATC 2 cut(s) 118, 141
Bst2UI CCWGG 2 cut(s) 51, 196
Bst6I CTCTTC 1 cut(s) 349
BstF5I GGATG 2 cut(s) 318, 425
BstKTI GATC 2 cut(s) 121, 144
BstMBI GATC 2 cut(s) 118, 141
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 2 cut(s) 51, 196
BstSCI CCNGG 2 cut(s) 49, 194
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 49, 211
BtsCI GGATG 2 cut(s) 318, 425
BtsIMutI CAGTG 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 47
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 1 cut(s) 58
CviJI RGCY 8 cut(s) 49, 130, 172, 199, 211, 223, 269, 452
CviKI_1 RGCY 8 cut(s) 49, 130, 172, 199, 211, 223, 269, 452
DpnI GATC 2 cut(s) 120, 143
DpnII GATC 2 cut(s) 118, 141
DriI GACNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 349
Eam1105I GACNNNNNGTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 49, 194
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 59, 78, 136, 214, 236, 339
FatI CATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 267, 450
FokI GGATG 2 cut(s) 325, 432
Fsp4HI GCNGC 2 cut(s) 267, 450
FspBI CTAG 3 cut(s) 41, 384, 465
GluI GCNGC 2 cut(s) 267, 450
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 49, 211
HapII CCGG 1 cut(s) 412
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 54, 100, 186, 373, 425
HpaII CCGG 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 409
Hpy188III TCNNGA 2 cut(s) 377, 398
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4IV ACGT 3 cut(s) 28, 300, 405
HpyCH4V TGCA 3 cut(s) 23, 80, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpySE526I ACGT 3 cut(s) 28, 300, 405
Hsp92II CATG 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 141
LpnPI CCDG 5 cut(s) 36, 63, 181, 208, 425
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 3 cut(s) 25, 89, 370
MaeI CTAG 3 cut(s) 41, 384, 465
MaeII ACGT 3 cut(s) 28, 300, 405
MalI GATC 2 cut(s) 120, 143
MboI GATC 2 cut(s) 118, 141
MboII GAAGA 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 3 cut(s) 283, 306, 334
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 4 cut(s) 63, 109, 195, 382
MmeI TCCRAC 2 cut(s) 128, 301
MnlI CCTC 3 cut(s) 81, 317, 320
Mox20I TGGCCA 1 cut(s) 211
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 211
MseI TTAA 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 211
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 2 cut(s) 51, 196
MvaI CCWGG 2 cut(s) 51, 196
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 2 cut(s) 118, 141
NlaIII CATG 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 425
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 2 cut(s) 268, 451
PleI GAGTC 4 cut(s) 62, 108, 194, 381
PpsI GAGTC 4 cut(s) 62, 108, 194, 381
Psp1406I AACGTT 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 49, 194
PspGI CCWGG 2 cut(s) 49, 194
PspPI GGNCC 1 cut(s) 47
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 267, 450
Sau3AI GATC 2 cut(s) 118, 141
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 4 cut(s) 63, 109, 195, 382
ScrFI CCNGG 2 cut(s) 51, 196
SetI ASST 6 cut(s) 31, 174, 225, 271, 303, 408
SfaNI GCATC 3 cut(s) 25, 89, 370
Sse9I AATT 3 cut(s) 283, 306, 334
SsiI CCGC 1 cut(s) 449
SspMI CTAG 3 cut(s) 41, 384, 465
StyD4I CCNGG 2 cut(s) 49, 194
TaiI ACGT 3 cut(s) 31, 303, 408
TaqI TCGA 2 cut(s) 88, 168
TasI AATT 3 cut(s) 283, 306, 334
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 265
XspI CTAG 3 cut(s) 41, 384, 465
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.