FvH4_6g37840

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004600
Physical Location & Seq
Reverse (-)
29795582 .. 29796895
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37840.t1

Sequence Viewer

Length: 489 bp
ATGGGTGTTCTTGCAACTATTGCTAAGAATTTGGATACATTGATCGGGCCAGGAGTTACACTTCTTTTTCCTTTATATGCAACAATGAGAGCAATAGAGACCCCTTCTGCACTAGACGATCAGCAGTGGCTTACATATTGGGTGTTATATTCTTTCATCACATTATTCGAGCTCTTCAGTTGGAAAGTCCTCGCTTGGATTCCAGTATGGCCATATATGAAATTGTTGTTCTGCATCTGGCTGGTATTGCCAACATTCAACGGGGCAGCCTATGTTTATGATAATATTGTGAGAAAATATGTGAAGCCTAGTGACTATATCAATTTCATCAGCTCATCAGCATCAAAGCGCCCAGAGGGACAGAATAAGGTCCTCCAGATGATGAGCCTGGATGCAAGGAAGTCAGTAGAGCGTTTTATCGATCAATATGGACCCGAGGCTTTCGAAAGAGTCGTCAGAGCAGCTGAAAGAGAAGCGAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

163

Amino Acids

18.78

Weight (kDa)

8.97

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 4.3e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 49, 387
AluBI AGCT 3 cut(s) 172, 333, 464
AluI AGCT 3 cut(s) 172, 333, 464
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 2 cut(s) 47, 209
ApeKI GCWGC 2 cut(s) 266, 461
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 438, 470
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 47, 370, 431
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 370, 431
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 278, 473
BciT130I CCWGG 2 cut(s) 51, 389
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 113, 309
BfoI RGCGCY 1 cut(s) 352
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 267, 462
BlsI GCNGC 2 cut(s) 268, 463
Bme1390I CCNGG 2 cut(s) 51, 389
Bme18I GGWCC 2 cut(s) 370, 431
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 3 cut(s) 47, 370, 431
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 2 cut(s) 51, 389
BmsI GCATC 3 cut(s) 243, 350, 382
BpmI CTGGAG 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 435
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 51, 389
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 278, 473
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 2 cut(s) 49, 211
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 2 cut(s) 49, 211
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 434
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 42, 118, 421
BspANI GGCC 2 cut(s) 49, 211
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 433
BspQI GCTCTTC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 3 cut(s) 42, 118, 421
Bst2UI CCWGG 2 cut(s) 51, 389
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 45, 121, 424
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 42, 118, 421
BstMWI GCNNNNNNNGC 2 cut(s) 20, 247
BstNI CCWGG 2 cut(s) 51, 389
BstSCI CCNGG 2 cut(s) 49, 387
BstV1I GCAGC 2 cut(s) 278, 473
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 211
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 484
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 47, 370, 431
ClaI ATCGAT 1 cut(s) 420
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 44, 120, 423
DpnII GATC 3 cut(s) 42, 118, 421
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 370, 431
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 49, 387
EcoT38I GRGCYC 1 cut(s) 174
FaqI GGGAC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 267, 462
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 267, 462
FspBI CTAG 2 cut(s) 113, 309
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 267, 462
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 2 cut(s) 49, 211
HhaI GCGC 1 cut(s) 351
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 2 cut(s) 199, 450
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 114
HpyCH4V TGCA 5 cut(s) 14, 80, 110, 234, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 247
HpyF3I CTNAG 1 cut(s) 24
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 42, 118, 421
LguI GCTCTTC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 36, 63, 216, 223, 227, 366, 374, 389, 401
Lsp1109I GCAGC 2 cut(s) 278, 473
LweI GCATC 3 cut(s) 243, 350, 382
MaeI CTAG 2 cut(s) 113, 309
MaeIII GTNAC 2 cut(s) 55, 311
MalI GATC 3 cut(s) 44, 120, 423
MboI GATC 3 cut(s) 42, 118, 421
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 3 cut(s) 28, 221, 322
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 5 cut(s) 200, 349, 383, 430, 471
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 51, 389
MvaI CCWGG 2 cut(s) 51, 389
MwoI GCNNNNNNNGC 2 cut(s) 20, 247
NdeII GATC 3 cut(s) 42, 118, 421
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 311
NspV TTCGAA 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 268, 463
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PpuMI RGGWCCY 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 49, 387
PspGI CCWGG 2 cut(s) 49, 387
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 3 cut(s) 47, 370, 431
PspPPI RGGWCCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 2 cut(s) 267, 462
Sau3AI GATC 3 cut(s) 42, 118, 421
Sau96I GGNCC 3 cut(s) 47, 370, 431
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 2 cut(s) 51, 389
SduI GDGCHC 1 cut(s) 174
SetI ASST 4 cut(s) 174, 335, 372, 466
SfaNI GCATC 3 cut(s) 243, 350, 382
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 370, 431
Sse9I AATT 3 cut(s) 28, 221, 322
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 113, 309
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 49, 387
TaqI TCGA 3 cut(s) 168, 420, 444
TasI AATT 3 cut(s) 28, 221, 322
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 266, 461
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 145, 233, 316
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 370, 431
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 113, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.