Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004600

Physical Location & Seq

Genomic Coordinates Reverse (-)

18910166 .. 18912238

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G170400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTGTTCTTGCAGCCGTTGCTAAAAATTTGGATACATTAATCGGGCCAGGAGTGATGCTTCTTTATCCTTTGTATGCATCAATGCGAGCAATCGAGAGCCCTTCTGCACTAGACGATCAGCAGTGGCTAACGTATTGGGTTATATATTCCTTCATAACATTATTCGAGCTATCCTGCTGGAAAGTCTTGGCTTGGATCCCAATATGGCCGTATATGAAGCTGCTGTTTTGCATGTGGTTGGTGTTGCCAATTTACAACGGGGCAGCCTATATTTATGAGAACATTGTGAGAAAATATGTGAAGCTTGGAGGGTATATGGTGAACTCAAACAAGCCAGAGGGTCAGAAGAAGGTCCTCCAAATGATGAGCCTGGATGCAAGGAGGTCCGTTGAGCGTTTCATCGATCAACATGGTATTGATGCTTTCGAAAGAGTCGTCAAAGCCGCTGAAAAAGAAGCTAGGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

158

Amino Acids

18.2

Weight (kDa)

9.0

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42820
fragaria_vesca	FvH4_6g37830 FvH4_6g37840
malus_domestica	MD09G1155500.v1.1 MD17G1141500.v1.1
prunus_persica	Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1
pyrus_communis	pycom09g07440 pycom17g13490
rosa_chinensis	RchiOBHm_Chr2g0150951 RchiOBHm_Chr2g0150981
rosa_laevigata	RLG00000020519 RLG00000020520
rosa_multiflora	Rmu_sc0000185.1_g000031 Rmu_sc0000185.1_g000032
rosa_roxburghii	Rroxscaffold_2G00096800 Rroxscaffold_2G00096820
rosa_rugosa	Rorug02G0423400 Rorug02G0423400
rosa_samantha	Rh2AG484100 Rh2AG484200 Rh2BG496300 Rh2BG496400 Rh2CG470200 Rh2CG470300 Rh2DG507200
rosa_wichuraiana	Rw2G039670 Rw2G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	193, 206
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	49, 372
AluBI	AGCT	4 cut(s)	172, 223, 307, 461
AluI	AGCT	4 cut(s)	172, 223, 307, 461
AlwI	GGATC	2 cut(s)	193, 206
AoxI	GGCC	2 cut(s)	47, 209
ApeKI	GCWGC	3 cut(s)	14, 223, 266
ApoI	RAATTY	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	47, 355, 387
AsuHPI	GGTGA	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	355, 387
BamHI	GGATCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	26, 210, 278
BceAI	ACGGC	2 cut(s)	2, 196
BciT130I	CCWGG	2 cut(s)	51, 374
BciVI	GTATCC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	113, 462
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	15, 224, 267, 447
BlsI	GCNGC	4 cut(s)	16, 225, 268, 448
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	51, 374
Bme18I	GGWCC	2 cut(s)	355, 387
BmgT120I	GGNCC	3 cut(s)	47, 355, 387
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	51, 374
BmsI	GCATC	4 cut(s)	48, 89, 367, 412
Bpu14I	TTCGAA	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	51, 374
BseCI	ATCGAT	1 cut(s)	405
BseGI	GGATG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	26, 210, 278
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	49, 211
BshVI	ATCGAT	1 cut(s)	405
BsnI	GGCC	2 cut(s)	49, 211
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	118, 198, 406
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	2 cut(s)	49, 211
BspDI	ATCGAT	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	193, 206
BspT104I	TTCGAA	1 cut(s)	429
BssMI	GATC	3 cut(s)	118, 198, 406
Bst2UI	CCWGG	2 cut(s)	51, 374
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	3 cut(s)	121, 201, 409
BstMBI	GATC	3 cut(s)	118, 198, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	51, 374
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	49, 372
BstV1I	GCAGC	3 cut(s)	26, 210, 278
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	49, 211
BsuTUI	ATCGAT	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	47, 355, 387
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	2 cut(s)	235, 413
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	3 cut(s)	120, 200, 408
DpnII	GATC	3 cut(s)	118, 198, 406
EaeI	YGGCCR	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	355, 387
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	49, 372
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	2 cut(s)	238, 416
FatI	CATG	2 cut(s)	234, 412
Fnu4HI	GCNGC	4 cut(s)	15, 224, 267, 447
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	15, 224, 267, 447
FspBI	CTAG	2 cut(s)	113, 462
GluI	GCNGC	4 cut(s)	15, 224, 267, 447
HaeIII	GGCC	2 cut(s)	49, 211
Hin1II	CATG	2 cut(s)	238, 416
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	435
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	114, 163, 346
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	5 cut(s)	14, 80, 110, 234, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	238, 416
Kzo9I	GATC	3 cut(s)	118, 198, 406
LpnPI	CCDG	7 cut(s)	36, 63, 166, 190, 351, 359, 386
Lsp1109I	GCAGC	3 cut(s)	26, 210, 278
LweI	GCATC	4 cut(s)	48, 89, 367, 412
MaeI	CTAG	2 cut(s)	113, 462
MaeII	ACGT	1 cut(s)	134
MalI	GATC	3 cut(s)	120, 200, 408
MboI	GATC	3 cut(s)	118, 198, 406
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	2 cut(s)	28, 252
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	4 cut(s)	305, 334, 368, 378
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	51, 374
MvaI	CCWGG	2 cut(s)	51, 374
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	3 cut(s)	118, 198, 406
NlaIII	CATG	2 cut(s)	238, 416
NlaIV	GGNNCC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PkrI	GCNGC	4 cut(s)	16, 225, 268, 448
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PpuMI	RGGWCCY	1 cut(s)	355
PshBI	ATTAAT	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	49, 372
PspGI	CCWGG	2 cut(s)	49, 372
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	3 cut(s)	47, 355, 387
PspPPI	RGGWCCY	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	4 cut(s)	15, 224, 267, 447
Sau3AI	GATC	3 cut(s)	118, 198, 406
Sau96I	GGNCC	3 cut(s)	47, 355, 387
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	51, 374
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	137, 174, 225, 309, 357, 389, 463
SfaNI	GCATC	4 cut(s)	48, 89, 367, 412
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	2 cut(s)	355, 387
Sse9I	AATT	2 cut(s)	28, 252
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	113, 462
StyD4I	CCNGG	2 cut(s)	49, 372
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	4 cut(s)	96, 168, 405, 429
TasI	AATT	2 cut(s)	28, 252
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	3 cut(s)	14, 223, 266
TspDTI	ATGAA	3 cut(s)	145, 233, 391
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	355, 387
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	2 cut(s)	113, 462
ZrmI	AGTACT	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.