Rh2AG484100

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004600
Physical Location & Seq
Reverse (-)
70486146 .. 70487618
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG484100.1

Sequence Viewer

Length: 438 bp
ATGGATGAAATATACATACACAGATATGCAACAATGAGAGCAATAGAGAGCGCTTCTACACTAGACGATCAGCAGTGGCTTACATATTGGGTGTTATATTCTTTGATCACATTATTCGAGCTCTTCTGTTGGAAAGTCCTCGCTTGGATTCCAATATGGCCATATATGAAGCTATTGTTCTGCATCTGGCTGGTGTTGCCAATATTCAACGGGGCAGCCTATGTTTATGAGAATATTGTGAGAAAATATGTGAAGCCCGGGGACTATATCAATTGGAGCTCATCGTCGTCATCAAAACACCCAGAGGGACAGAAGAAGGTTATCCAAATGTTGAGCCTCGATGGAAGGAAGTCGGTAGAGCATTTTATCGATCACCATGGATCAGAGGCTTTCGAGAGGGTCGTCAGAACGGCTGAAAGAGAAGCTAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

145

Amino Acids

17.25

Weight (kDa)

7.8

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 9 - 83 2.2e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 4 cut(s) 121, 172, 279, 425
AluI AGCT 4 cut(s) 121, 172, 279, 425
Alw21I GWGCWC 2 cut(s) 123, 281
AlwI GGATC 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 258, 259
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 257
BalI TGGCCA 1 cut(s) 160
BanII GRGCYC 2 cut(s) 123, 281
Bbv12I GWGCWC 2 cut(s) 123, 281
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 426
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 2 cut(s) 258, 259
BfaI CTAG 2 cut(s) 62, 426
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 258, 259
BmeT110I CYCGRG 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 258, 259
BmsI GCATC 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 258, 259
Bsa29I ATCGAT 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 257, 258, 376
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 257, 258, 376
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 123, 281
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 275, 321
BsmFI GGGAC 2 cut(s) 275, 321
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 123, 281
Bsp143I GATC 4 cut(s) 67, 105, 370, 380
Bsp19I CCATGG 1 cut(s) 376
BspANI GGCC 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 369
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 257, 258, 376
BssMI GATC 4 cut(s) 67, 105, 370, 380
BssT1I CCWWGG 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 70, 108, 373, 383
BstMBI GATC 4 cut(s) 67, 105, 370, 380
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 256, 257
BstV1I GCAGC 1 cut(s) 227
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 80, 433
CfoI GCGC 1 cut(s) 53
Cfr9I CCCGGG 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 369
CviAII CATG 1 cut(s) 377
DpnI GATC 4 cut(s) 69, 107, 372, 382
DpnII GATC 4 cut(s) 67, 105, 370, 380
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 2 cut(s) 121, 279
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 2 cut(s) 123, 281
Eco47III AGCGCT 1 cut(s) 52
Eco53kI GAGCTC 2 cut(s) 121, 279
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 2 cut(s) 121, 279
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 2 cut(s) 123, 281
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 380
FaqI GGGAC 2 cut(s) 275, 321
FatI CATG 1 cut(s) 376
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 123, 281
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 62, 426
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 380
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 2 cut(s) 385, 407
Hpy188III TCNNGA 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 310, 339
HpyCH4V TGCA 2 cut(s) 29, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
Hsp92II CATG 1 cut(s) 380
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 4 cut(s) 67, 105, 370, 380
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 4 cut(s) 172, 176, 271, 315
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 62, 426
MalI GATC 4 cut(s) 69, 107, 372, 382
MboI GATC 4 cut(s) 67, 105, 370, 380
MboII GAAGA 2 cut(s) 115, 325
MfeI CAATTG 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 123, 281
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 271
MluNI TGGCCA 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 5 cut(s) 149, 298, 347, 379, 390
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 160
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 258, 259
MunI CAATTG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 2 cut(s) 258, 259
NcoI CCATGG 1 cut(s) 376
NdeII GATC 4 cut(s) 67, 105, 370, 380
NlaIII CATG 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 217
Psp124BI GAGCTC 2 cut(s) 123, 281
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 2 cut(s) 123, 281
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 4 cut(s) 67, 105, 370, 380
ScrFI CCNGG 2 cut(s) 258, 259
SduI GDGCHC 2 cut(s) 123, 281
SetI ASST 5 cut(s) 123, 174, 281, 321, 427
SfaNI GCATC 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 271
SspI AATATT 2 cut(s) 204, 235
SspMI CTAG 2 cut(s) 62, 426
SstI GAGCTC 2 cut(s) 123, 281
StyD4I CCNGG 2 cut(s) 256, 257
StyI CCWWGG 1 cut(s) 376
TaqI TCGA 4 cut(s) 117, 339, 369, 393
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 148
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 21, 182
TspMI CCCGGG 1 cut(s) 257
TspRI CASTG 1 cut(s) 80
XmaI CCCGGG 1 cut(s) 257
XspI CTAG 2 cut(s) 62, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.